mRNA_C-tenellus_contig10459.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10459.5.1
Unique NamemRNA_C-tenellus_contig10459.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10459.5.1 vs. uniprot
Match: A0A6S9ITP1_HETAK (ADP-ribosylation factor-like protein 6 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ITP1_HETAK)

HSP 1 Score: 144 bits (362), Expect = 4.360e-41
Identity = 70/122 (57.38%), Postives = 94/122 (77.05%), Query Frame = 1
Query:    4 QMGFLKKLGEGMVGKPSVGKTVLVVGLDNSGKSTLVNNLKPISQQGRTLEATPTVGLEVERFTKSHINFTMMDMSGSSKYRALWEQYLSDVQAIIFVIDSTDRIRMCVAKQELDGLLGQKEV 369
            +MG  KK+ + M G   V   +LVVGLDNSGK+TL+N++KP  ++  T EATPTVG +VE F+K+ +NFT+ DMSG ++YR+LWE Y  DV+A+IFV+DSTDRIRMCVAK ELD  LG +++
Sbjct:   13 RMGLFKKIAQAM-GMSWVEVRILVVGLDNSGKTTLINHIKP--KKATTFEATPTVGFQVEEFSKNSLNFTIFDMSGQARYRSLWEHYYRDVEAVIFVLDSTDRIRMCVAKDELDSFLGHEDI 131          
BLAST of mRNA_C-tenellus_contig10459.5.1 vs. uniprot
Match: A0A225UHK2_9STRA (ADP-ribosylation factor protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UHK2_9STRA)

HSP 1 Score: 139 bits (350), Expect = 5.310e-40
Identity = 73/122 (59.84%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    7 MGFLKKLGEGMVGKPSVGKTVLVVGLDNSGKSTLVNNLKPISQQGRTLEATPTVGLEVERFTKSHINFTMMDMSGSSKYRALWEQYLSDVQAIIFVIDSTDRIRMCVAKQELDGLLGQKEVS 372
            MG  K L   + G       +LVVGLDNSGK+TLVN+LKP   Q R  E  PT+G +VE FTKS++NFT+ DMSG S+YR+LWE Y SDVQAII+V+DSTD IRMCVAK EL+ L+  KE+S
Sbjct:    1 MGLFKLLASAL-GIKKTQVRILVVGLDNSGKTTLVNHLKPKKSQSR--EVVPTIGFQVEEFTKSNLNFTVFDMSGQSRYRSLWENYYSDVQAIIYVLDSTDTIRMCVAKDELEQLVEHKELS 119          
BLAST of mRNA_C-tenellus_contig10459.5.1 vs. uniprot
Match: H3G5F9_PHYRM (ADP-ribosylation factor-like protein 6 n=21 Tax=Phytophthora TaxID=4783 RepID=H3G5F9_PHYRM)

HSP 1 Score: 138 bits (347), Expect = 4.980e-39
Identity = 72/122 (59.02%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    7 MGFLKKLGEGMVGKPSVGKTVLVVGLDNSGKSTLVNNLKPISQQGRTLEATPTVGLEVERFTKSHINFTMMDMSGSSKYRALWEQYLSDVQAIIFVIDSTDRIRMCVAKQELDGLLGQKEVS 372
            MG  K L   + G       +LVVGLDNSGK+TLVN+LKP   Q R  E  PT+G +VE FTKS++NFT+ DMSG S+YR+LWE Y SDVQAII+V+DSTD IRMCVAK EL+ L+  KE++
Sbjct:    1 MGLFKLLASAL-GIKKTQVRILVVGLDNSGKTTLVNHLKPKKSQAR--EVVPTIGFQVEEFTKSNLNFTVFDMSGQSRYRSLWENYYSDVQAIIYVLDSTDTIRMCVAKDELEQLVEHKELA 119          
BLAST of mRNA_C-tenellus_contig10459.5.1 vs. uniprot
Match: A0A0N7L674_PLAHL (Adp-ribosylation factor-like protein 6-like isoform x3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L674_PLAHL)

HSP 1 Score: 137 bits (345), Expect = 1.230e-38
Identity = 72/121 (59.50%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    7 MGFLKKLGEGMVGKPSVGKTVLVVGLDNSGKSTLVNNLKPISQQGRTLEATPTVGLEVERFTKSHINFTMMDMSGSSKYRALWEQYLSDVQAIIFVIDSTDRIRMCVAKQELDGLLGQKEV 369
            MG  K L   + G       +LVVGLDNSGK++LVN+LKP + Q R  E  PT+G +VE FTKS++NFT+ DMSG S+YR+LWE Y SDVQAII+V+DSTD IRMCVAK EL+ LL  KE+
Sbjct:    1 MGLFKVLAAAL-GLKKTQVRILVVGLDNSGKTSLVNHLKPKNTQAR--EVVPTIGFQVEEFTKSNLNFTVFDMSGQSRYRSLWENYYSDVQAIIYVLDSTDTIRMCVAKDELEQLLEHKEL 118          
BLAST of mRNA_C-tenellus_contig10459.5.1 vs. uniprot
Match: A0A7S3H1V6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H1V6_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.690e-38
Identity = 69/121 (57.02%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    7 MGFLKKLGEGMVGKPSVGKTVLVVGLDNSGKSTLVNNLKPISQQGRTLEATPTVGLEVERFTKSHINFTMMDMSGSSKYRALWEQYLSDVQAIIFVIDSTDRIRMCVAKQELDGLLGQKEV 369
            MGF   +    +G    G+ VLV+GLDNSGK+TL+++LKP  ++  T E TPTVG +VE F+K+++NFT+ DMSG  +YR LWE Y SDV+AIIFV+DSTDR+RMCVAK+ELD LL  +E+
Sbjct:    1 MGFFSMISNA-IGWSKKGR-VLVIGLDNSGKTTLIHHLKP--KKAATFEVTPTVGFQVEEFSKNNVNFTVYDMSGQGRYRNLWEHYYSDVEAIIFVLDSTDRLRMCVAKEELDQLLAHEEI 117          
BLAST of mRNA_C-tenellus_contig10459.5.1 vs. uniprot
Match: A0A6A3WUL2_9STRA (ADP-ribosylation factor-like protein 6 n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3WUL2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.740e-38
Identity = 72/122 (59.02%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    7 MGFLKKLGEGMVGKPSVGKTVLVVGLDNSGKSTLVNNLKPISQQGRTLEATPTVGLEVERFTKSHINFTMMDMSGSSKYRALWEQYLSDVQAIIFVIDSTDRIRMCVAKQELDGLLGQKEVS 372
            MG  K L   + G       +LVVGLDNSGK+TLVN+LKP   Q R  E  PT+G +VE FTKS++NFT+ DMSG S+YR LWE Y SDVQAII+V+DSTD IRMCVAK EL+ L+  KE++
Sbjct:    1 MGLFKLLASAL-GIKKTQVRILVVGLDNSGKTTLVNHLKPKKSQAR--EVVPTIGFQVEEFTKSNLNFTVFDMSGQSRYRNLWENYYSDVQAIIYVLDSTDTIRMCVAKDELEQLVEHKELA 119          
BLAST of mRNA_C-tenellus_contig10459.5.1 vs. uniprot
Match: A0A5D6XUY5_9STRA (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=A0A5D6XUY5_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.460e-38
Identity = 72/122 (59.02%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    7 MGFLKKLGEGMVGKPSVGKTVLVVGLDNSGKSTLVNNLKPISQQGRTLEATPTVGLEVERFTKSHINFTMMDMSGSSKYRALWEQYLSDVQAIIFVIDSTDRIRMCVAKQELDGLLGQKEVS 372
            MG  K L   + G       +LVVGLDNSGK+TLVN+LKP   Q R  E  PT+G +VE FTK+++NFT+ DMSG S+YR LWE Y SDVQAII+V+DSTD IRMCVAK EL+ L+  KE+S
Sbjct:    1 MGLFKMLTNAL-GIKKTQVRILVVGLDNSGKTTLVNHLKPKKSQAR--EVVPTIGFQVEEFTKANLNFTVFDMSGQSRYRNLWENYYSDVQAIIYVLDSTDSIRMCVAKDELEQLVEHKELS 119          
BLAST of mRNA_C-tenellus_contig10459.5.1 vs. uniprot
Match: A0A485KFA7_9STRA (Aste57867_3371 protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A485KFA7_9STRA)

HSP 1 Score: 136 bits (342), Expect = 3.390e-38
Identity = 72/122 (59.02%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    7 MGFLKKLGEGMVGKPSVGKTVLVVGLDNSGKSTLVNNLKPISQQGRTLEATPTVGLEVERFTKSHINFTMMDMSGSSKYRALWEQYLSDVQAIIFVIDSTDRIRMCVAKQELDGLLGQKEVS 372
            MG  KKL   + G       +LVVGLDNSGK+TLVN+LKP   Q    E  PTVG +VE FTK +++FT+ DMSG S+YR+LWE Y SDVQAIIFV+DSTD IRMCVAK EL+ +L  K++S
Sbjct:    1 MGLFKKLANSL-GMKKQSVRILVVGLDNSGKTTLVNHLKPKKLQSH--EVAPTVGFQVEEFTKYNLSFTVFDMSGQSRYRSLWENYYSDVQAIIFVMDSTDTIRMCVAKDELEQILQHKDLS 119          
BLAST of mRNA_C-tenellus_contig10459.5.1 vs. uniprot
Match: A0A7S2V202_9STRA (ADP-ribosylation factor-like protein 6 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V202_9STRA)

HSP 1 Score: 135 bits (341), Expect = 4.800e-38
Identity = 65/122 (53.28%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    7 MGFLKKLGEGMVGKPSVGKTVLVVGLDNSGKSTLVNNLKPISQQGRTLEATPTVGLEVERFTKSHINFTMMDMSGSSKYRALWEQYLSDVQAIIFVIDSTDRIRMCVAKQELDGLLGQKEVS 372
            MGF K++   + G       +L+VGLDNSGK+TL+N++KP  ++  T E TPTVG +VE F+K+++NFT+ DMSG ++YR+LWE Y  DVQAI+FV+DSTDRIR+CVAK EL+ ++  ++VS
Sbjct:    1 MGFFKRIANSL-GFQKHEVRILIVGLDNSGKTTLINHIKP--KKATTFEVTPTVGFQVEEFSKNNLNFTIFDMSGQARYRSLWEHYYRDVQAIMFVLDSTDRIRLCVAKDELETMMAHEDVS 119          
BLAST of mRNA_C-tenellus_contig10459.5.1 vs. uniprot
Match: D7FVR2_ECTSI (ARL6, ARF-like Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR2_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 5.490e-38
Identity = 67/121 (55.37%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    7 MGFLKKLGEGMVGKPSVGKTVLVVGLDNSGKSTLVNNLKPISQQGRTLEATPTVGLEVERFTKSHINFTMMDMSGSSKYRALWEQYLSDVQAIIFVIDSTDRIRMCVAKQELDGLLGQKEV 369
            MG  KK+   M G+      +LVVGLDNSGKSTL+ ++KP   +  T EATPTVG +V+ F K+++NFT++DMSG S+YR LWE Y  +V A+IFV+DSTDR+RMCVAK+EL+ +L   EV
Sbjct:    1 MGLFKKIASAM-GRSRGNMRILVVGLDNSGKSTLIEHIKP--NKASTFEATPTVGFQVQEFAKNNLNFTVIDMSGQSRYRTLWEHYFCNVHAVIFVVDSTDRVRMCVAKEELEEVLKHDEV 118          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10459.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S9ITP1_HETAK4.360e-4157.38ADP-ribosylation factor-like protein 6 n=1 Tax=Het... [more]
A0A225UHK2_9STRA5.310e-4059.84ADP-ribosylation factor protein (Fragment) n=1 Tax... [more]
H3G5F9_PHYRM4.980e-3959.02ADP-ribosylation factor-like protein 6 n=21 Tax=Ph... [more]
A0A0N7L674_PLAHL1.230e-3859.50Adp-ribosylation factor-like protein 6-like isofor... [more]
A0A7S3H1V6_9STRA1.690e-3857.02Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6A3WUL2_9STRA1.740e-3859.02ADP-ribosylation factor-like protein 6 n=2 Tax=Phy... [more]
A0A5D6XUY5_9STRA2.460e-3859.02Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A485KFA7_9STRA3.390e-3859.02Aste57867_3371 protein n=7 Tax=Aphanomyces TaxID=1... [more]
A0A7S2V202_9STRA4.800e-3853.28ADP-ribosylation factor-like protein 6 n=1 Tax=Fib... [more]
D7FVR2_ECTSI5.490e-3855.37ARL6, ARF-like Ras superfamily GTPase n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10459contigC-tenellus_contig10459:3030..4522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4787.PITG_10212T0
PFAMsArf
Model size372
Max annot lvl4776|Peronosporales
KEGG koko:K07951
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.3e-40
EggNOG OGsCOG1100@1|root,KOG0070@2759|Eukaryota,3QDD1@4776|Peronosporales
DescriptionARF-like small GTPases; ARF, ADP-ribosylation factor
Cds size366
COG categoryU
BRITEko00000,ko03036,ko04031,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789132.2686188-UTR-C-tenellus_contig10459:3029..30351680789132.2686188-UTR-C-tenellus_contig10459:3029..3035Choristocarpus tenellus KU2346UTRC-tenellus_contig10459 3030..3035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789132.2797873-CDS-C-tenellus_contig10459:3035..31641680789132.2797873-CDS-C-tenellus_contig10459:3035..3164Choristocarpus tenellus KU2346CDSC-tenellus_contig10459 3036..3164 +
1680789132.2889657-CDS-C-tenellus_contig10459:3409..35431680789132.2889657-CDS-C-tenellus_contig10459:3409..3543Choristocarpus tenellus KU2346CDSC-tenellus_contig10459 3410..3543 +
1680789132.3001153-CDS-C-tenellus_contig10459:4419..45221680789132.3001153-CDS-C-tenellus_contig10459:4419..4522Choristocarpus tenellus KU2346CDSC-tenellus_contig10459 4420..4522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10459.5.1prot_C-tenellus_contig10459.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10459 3036..4522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10459.5.1

>prot_C-tenellus_contig10459.5.1 ID=prot_C-tenellus_contig10459.5.1|Name=mRNA_C-tenellus_contig10459.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=122bp
MGFLKKLGEGMVGKPSVGKTVLVVGLDNSGKSTLVNNLKPISQQGRTLEA
TPTVGLEVERFTKSHINFTMMDMSGSSKYRALWEQYLSDVQAIIFVIDST
DRIRMCVAKQELDGLLGQKEVS
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mRNA from alignment at C-tenellus_contig10459:3030..4522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10459.5.1 ID=mRNA_C-tenellus_contig10459.5.1|Name=mRNA_C-tenellus_contig10459.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1493bp|location=Sequence derived from alignment at C-tenellus_contig10459:3030..4522+ (Choristocarpus tenellus KU2346)
GAACAGATGGGATTCCTGAAAAAGCTAGGGGAGGGCATGGTAGGAAAGCC GTCAGTAGGGAAGACAGTACTGGTGGTTGGACTGGATAACAGTGGGAAGT CGACGCTTGTAAATAACCTGAAGCCAATTAGTCAGGTACGTCCGTGTGAT AGGAGGAACGCTGTTCACTGGACCAAGAACGAAATTGCCACCTGCCAACT ATGTAGCGAAAGGGGTGGTATAGGTACAAGATACGACCATTCGAAGAAAA GGGAACACTGGGTCAGCATCAGATGAAACAGCATCCATCTTAAAAGGGCA GCAGGGGGTGGTATAAGATCCATGCACAACCATATTACCAACTTACCGTG TACGCCGTCAATCAAATGTCTCCTGTCAAGCAGGGAAGGACGTTGGAGGC GACTCCGACTGTTGGTCTCGAGGTCGAGCGTTTCACCAAGAGTCACATTA ATTTCACAATGATGGACATGTCTGGGTCGTCAAAGTATCGAGCACTGTGG GAGCAATACCTTAGGTGGGTCGAAAAGGCTGTTGCCCCTTCATCAACAGC ATAACTATGCAGGTTTAGCAACAAGAAATACAAATTGTGCATACCTCCAT GTGTTGTATGTGAAAAAGCAATTAAGCAAGCGAGCTATTGTTAACTTGAA GCGCACAAAAGGTGCATATGCTTGGTCCGCTTGATGTGCACTGCTGCTGA GGCAAGATTTCTCCTCTTCATCTAAGATGCAGGAAACTCAAACTCGCTCT CTCTTTCTGAGAAGAAGGTTGGGGCTGAGAGTGTAAACAAAAAATATACC ACTAGTCGTATATATAGCCTAACATTAGATTCATTTGCCCCGGTTAGGTT TTGGAGGCGCATACATGCCTCATCTTGCGGTCAAATGGCTGCATCAACAA TAGCGCAAACAGAGCCAGCCCCAATACAAGTAGTAGTGACCATCACCCAA GGAGGTACATTTTATTCCTGTTCTATTGCAGTCGGCTCTTTGGTCGAATT CTTAGGTACTGCTCCTGACAGTGCACATGCTTGCCAGAATCCTCAAAATG CAACTCAGGGTACCTCTTGTTTACTTTTGACCCTGAGCTTAATAGAGTCC ACATTGTCCCTCTGTGCTGGAAATATGAACAGTAGCTTTCTGCCTTTGTC TTGGCATGTCACCAGTGTTTGTGGCAACAAACTTTTGCAAAACTGTTGAC ATACAGAACGAACAAGTAGATATTGCTGTCCATTGTTTTTCTGACGGTCA AGTTGTGAGAGGGACACCCTTGCCTCCAAACACACATGTAGCAAGGCCTG GTGCAAGTTGCAAGTCTAAGAGGTTACCCTTCTCCCCCCCTACCTGTACA TATATATACTTGTATATACATGCTCGCATTGCGTTGGCAGTGATGTACAG GCAATCATTTTCGTCATTGACAGCACAGATCGCATAAGGATGTGTGTAGC AAAACAAGAGTTGGATGGGTTGCTTGGACAGAAGGAGGTAAGT
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Coding sequence (CDS) from alignment at C-tenellus_contig10459:3030..4522+

>mRNA_C-tenellus_contig10459.5.1 ID=mRNA_C-tenellus_contig10459.5.1|Name=mRNA_C-tenellus_contig10459.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=366bp|location=Sequence derived from alignment at C-tenellus_contig10459:3030..4522+ (Choristocarpus tenellus KU2346)
ATGGGATTCCTGAAAAAGCTAGGGGAGGGCATGGTAGGAAAGCCGTCAGT
AGGGAAGACAGTACTGGTGGTTGGACTGGATAACAGTGGGAAGTCGACGC
TTGTAAATAACCTGAAGCCAATTAGTCAGCAGGGAAGGACGTTGGAGGCG
ACTCCGACTGTTGGTCTCGAGGTCGAGCGTTTCACCAAGAGTCACATTAA
TTTCACAATGATGGACATGTCTGGGTCGTCAAAGTATCGAGCACTGTGGG
AGCAATACCTTAGTGATGTACAGGCAATCATTTTCGTCATTGACAGCACA
GATCGCATAAGGATGTGTGTAGCAAAACAAGAGTTGGATGGGTTGCTTGG
ACAGAAGGAGGTAAGT
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