mRNA_C-tenellus_contig10403.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10403.1.1
Unique NamemRNA_C-tenellus_contig10403.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10403.1.1 vs. uniprot
Match: G4ZUB7_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZUB7_PHYSP)

HSP 1 Score: 110 bits (274), Expect = 6.520e-28
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 QMVCPAAVQFLSTPLHLLGLDLYNNPKNLPAQRVSFITREYAASVTARIARIGPAFGIGGVGNTAFRKYFRSTI 222
            Q+VCPAAVQFLSTPLHL+GLDLYNN  +  AQRVSF+ REY  SV AR+ RIGPAFGIGGVGNT FR   R+ +
Sbjct:  190 QLVCPAAVQFLSTPLHLMGLDLYNNKGHAMAQRVSFVQREYVKSVFARVGRIGPAFGIGGVGNTYFRNSLRAKL 263          
BLAST of mRNA_C-tenellus_contig10403.1.1 vs. uniprot
Match: A0A2P4XPY5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPY5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 8.170e-28
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 QMVCPAAVQFLSTPLHLLGLDLYNNPKNLPAQRVSFITREYAASVTARIARIGPAFGIGGVGNTAFRKYFRSTI 222
            Q++CPAAVQFLSTPLHLLGLDLYNN  +   QRVSF+ REY  SV AR+ RIGPAFGIGG GN  FR   R+ +
Sbjct:   11 QLICPAAVQFLSTPLHLLGLDLYNNKGHTMTQRVSFVQREYVKSVLARVGRIGPAFGIGGGGNAYFRNTLRAKL 84          
BLAST of mRNA_C-tenellus_contig10403.1.1 vs. uniprot
Match: A0A835Z5G8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 9.240e-28
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    1 QMVCPAAVQFLSTPLHLLGLDLYNNPKNLPAQRVSFITREYAASVTARIARIGPAFGIGGVGNTAFRKYFRSTIA 225
            QM CPAAVQFLSTPLHL+GLDLYNNPK+    R +F+  +Y +SV ARI RIGPAFGIGGVGNTAFRK  R+  A
Sbjct:  204 QMACPAAVQFLSTPLHLIGLDLYNNPKSTARDRWTFMCSKYTSSVAARIGRIGPAFGIGGVGNTAFRKGLRARFA 278          
BLAST of mRNA_C-tenellus_contig10403.1.1 vs. uniprot
Match: A0A662XCZ4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCZ4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.460e-27
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 QMVCPAAVQFLSTPLHLLGLDLYNNPKNLPAQRVSFITREYAASVTARIARIGPAFGIGGVGNTAFRKYFRSTIA 225
            Q+VCPAAVQF+STPLHLLGLDLYNN     A+R SF+ REY  SV ARI RIGPAFGIGGVGNT FR   R+T A
Sbjct:  188 QLVCPAAVQFISTPLHLLGLDLYNNKGLSAAKRASFVQREYLKSVFARIGRIGPAFGIGGVGNTYFRDQLRTTFA 262          
BLAST of mRNA_C-tenellus_contig10403.1.1 vs. uniprot
Match: H3GH37_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH37_PHYRM)

HSP 1 Score: 106 bits (265), Expect = 1.370e-26
Identity = 53/71 (74.65%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 QMVCPAAVQFLSTPLHLLGLDLYNNPKNLPAQRVSFITREYAASVTARIARIGPAFGIGGVGNTAFRKYFR 213
            Q+VCPAAVQ LSTPLHLLGLDLYNN  +  A+RVSF+ REY  SV ARI RIGPAFGIGGVGNT FR   R
Sbjct:  188 QLVCPAAVQLLSTPLHLLGLDLYNNQGHAVAKRVSFVKREYVKSVLARIGRIGPAFGIGGVGNTYFRNTLR 258          
BLAST of mRNA_C-tenellus_contig10403.1.1 vs. uniprot
Match: W2KIJ3_PHYPR (Uncharacterized protein n=15 Tax=Peronosporaceae TaxID=4777 RepID=W2KIJ3_PHYPR)

HSP 1 Score: 106 bits (264), Expect = 1.930e-26
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 QMVCPAAVQFLSTPLHLLGLDLYNNPKNLPAQRVSFITREYAASVTARIARIGPAFGIGGVGNTAFRKYFRSTI 222
            Q+VCPAAVQF+STPLHLLGLDLYNN  +  +QRV FI REY  SV ARI RIGPAFGIGGVGN  FR   R+ +
Sbjct:  188 QLVCPAAVQFVSTPLHLLGLDLYNNKGHAMSQRVGFIRREYVKSVLARIGRIGPAFGIGGVGNAYFRNTLRAKL 261          
BLAST of mRNA_C-tenellus_contig10403.1.1 vs. uniprot
Match: A0A484DVU1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVU1_BRELC)

HSP 1 Score: 105 bits (261), Expect = 5.070e-26
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 QMVCPAAVQFLSTPLHLLGLDLYNNPKNLPAQRVSFITREYAASVTARIARIGPAFGIGGVGNTAFRKYFRSTI 222
            Q++CPAAVQF+STPLHLLGLDLYNN  +   +RV+FI REY  SV AR+ RIGPAFGIGGVGN  FR   R+T+
Sbjct:  185 QLLCPAAVQFVSTPLHLLGLDLYNNKGHAIGRRVNFIQREYVKSVLARVGRIGPAFGIGGVGNNYFRNTLRATL 258          
BLAST of mRNA_C-tenellus_contig10403.1.1 vs. uniprot
Match: A0A3M6VQY3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQY3_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.040e-25
Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 QMVCPAAVQFLSTPLHLLGLDLYNNPKNLPAQRVSFITREYAASVTARIARIGPAFGIGGVGNTAFRKYFRSTI 222
            Q++CPAAVQF+STPLHLLGLDLYNN  +   Q  S + REY  SV AR+ RIGPAFG+GGVGN  FR  FR+ +
Sbjct:  189 QLICPAAVQFISTPLHLLGLDLYNNKGHTMTQHASLVRREYVKSVLARVGRIGPAFGVGGVGNAYFRNIFRAKL 262          
BLAST of mRNA_C-tenellus_contig10403.1.1 vs. uniprot
Match: A0A0P1AEL6_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEL6_PLAHL)

HSP 1 Score: 102 bits (254), Expect = 5.910e-25
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 QMVCPAAVQFLSTPLHLLGLDLYNNPKNLPAQRVSFITREYAASVTARIARIGPAFGIGGVGNTAFRKYFRSTI 222
            Q++CPAAVQF+STPLHLLGLDLYNN  +   QR+ FI REY  SV ARI RIGPAFGIGGVGN+  R   R+ +
Sbjct:  188 QLICPAAVQFVSTPLHLLGLDLYNNKGHAVTQRIGFIQREYVKSVLARIGRIGPAFGIGGVGNSYVRNTLRAGL 261          
BLAST of mRNA_C-tenellus_contig10403.1.1 vs. uniprot
Match: H6S466_PLAVT (Uncharacterized protein (Fragment) n=1 Tax=Plasmopara viticola TaxID=143451 RepID=H6S466_PLAVT)

HSP 1 Score: 99.8 bits (247), Expect = 3.670e-24
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 QMVCPAAVQFLSTPLHLLGLDLYNNPKNLPAQRVSFITREYAASVTARIARIGPAFGIGGVGNTAFRKYFRSTI 222
            Q++CPAAVQF+STPLHLLGLDLYNN     AQRV+ I RE+  S+ ARI RIGPAFGIGGVGN  FR   ++ I
Sbjct:  160 QVLCPAAVQFVSTPLHLLGLDLYNNKNQSVAQRVALIQREFGKSLLARIGRIGPAFGIGGVGNAYFRHTLQAGI 233          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10403.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G4ZUB7_PHYSP6.520e-2871.62Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A2P4XPY5_9STRA8.170e-2867.57Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A835Z5G8_9STRA9.240e-2870.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662XCZ4_9STRA2.460e-2772.00Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
H3GH37_PHYRM1.370e-2674.65Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
W2KIJ3_PHYPR1.930e-2670.27Uncharacterized protein n=15 Tax=Peronosporaceae T... [more]
A0A484DVU1_BRELC5.070e-2667.57Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A3M6VQY3_9STRA3.040e-2563.51Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A0P1AEL6_PLAHL5.910e-2566.22Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
H6S466_PLAVT3.670e-2466.22Uncharacterized protein (Fragment) n=1 Tax=Plasmop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10403contigC-tenellus_contig10403:2924..3157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo109409
Model size234
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.7e-28
EggNOG OGs28PN9@1|root,2QWAD@2759|Eukaryota,3Q8QZ@4776|Peronosporales
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789130.0001178-CDS-C-tenellus_contig10403:2923..31541680789130.0001178-CDS-C-tenellus_contig10403:2923..3154Choristocarpus tenellus KU2346CDSC-tenellus_contig10403 2924..3154 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789130.0094392-UTR-C-tenellus_contig10403:3154..31571680789130.0094392-UTR-C-tenellus_contig10403:3154..3157Choristocarpus tenellus KU2346UTRC-tenellus_contig10403 3155..3157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10403.1.1prot_C-tenellus_contig10403.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10403 2924..3154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10403.1.1

>prot_C-tenellus_contig10403.1.1 ID=prot_C-tenellus_contig10403.1.1|Name=mRNA_C-tenellus_contig10403.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=77bp
MVCPAAVQFLSTPLHLLGLDLYNNPKNLPAQRVSFITREYAASVTARIAR
IGPAFGIGGVGNTAFRKYFRSTIAGC*
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mRNA from alignment at C-tenellus_contig10403:2924..3157-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10403.1.1 ID=mRNA_C-tenellus_contig10403.1.1|Name=mRNA_C-tenellus_contig10403.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=234bp|location=Sequence derived from alignment at C-tenellus_contig10403:2924..3157- (Choristocarpus tenellus KU2346)
CAGATGGTGTGCCCAGCAGCTGTCCAGTTCCTGTCAACCCCTCTCCACCT CCTCGGGCTAGACCTGTACAACAACCCCAAGAACCTTCCAGCACAGAGGG TATCCTTTATCACCCGAGAATATGCAGCCTCTGTCACTGCCCGTATAGCC CGTATAGGCCCTGCATTTGGTATTGGAGGAGTGGGAAACACTGCCTTCCG AAAGTACTTCCGATCTACCATCGCTGGGTGTTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10403:2924..3157-

>mRNA_C-tenellus_contig10403.1.1 ID=mRNA_C-tenellus_contig10403.1.1|Name=mRNA_C-tenellus_contig10403.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=231bp|location=Sequence derived from alignment at C-tenellus_contig10403:2924..3157- (Choristocarpus tenellus KU2346)
ATGGTGTGCCCAGCAGCTGTCCAGTTCCTGTCAACCCCTCTCCACCTCCT
CGGGCTAGACCTGTACAACAACCCCAAGAACCTTCCAGCACAGAGGGTAT
CCTTTATCACCCGAGAATATGCAGCCTCTGTCACTGCCCGTATAGCCCGT
ATAGGCCCTGCATTTGGTATTGGAGGAGTGGGAAACACTGCCTTCCGAAA
GTACTTCCGATCTACCATCGCTGGGTGTTAG
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