mRNA_C-tenellus_contig10384.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10384.1.1
Unique NamemRNA_C-tenellus_contig10384.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10384.1.1 vs. uniprot
Match: D8LDT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT6_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 6.720e-47
Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 1 
Query:    1 GKEVLEMGEKYCVDCDFRRVKWACLQCKDAFCDECSARIHGSGHRKTHSLTKYAESRKGWQTVEGRTENEPTFYYNATTAESRFEKPEELMTPEELGEHKKYLEFKEASEK 333
            GKE L  GE++CVDC FR+ KW CLQCKDA C EC+ARIHGSGHRK H +  YA+S+KGWQTVEGRT+NEPT+Y+NA+T ES F+KP++LM PEEL EH ++L++KE SEK
Sbjct: 1041 GKEDLSPGERHCVDCGFRKAKWVCLQCKDALCGECNARIHGSGHRKNHQVETYAKSKKGWQTVEGRTDNEPTYYFNASTGESTFDKPQDLMLPEELVEHLRFLKYKETSEK 1151
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BLAST of mRNA_C-tenellus_contig10384.1.1 vs. uniprot
Match: A0A8J2SF21_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SF21_9STRA)

HSP 1 Score: 104 bits (260), Expect = 7.720e-24
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    4 KEVLEMGEKYCVDCDFRRVKWACLQCKDAFCDECSARIHGSGHRKTHSLTKYAESRKGWQTVEGRTENEPTFYYNATTAESRFEKPEELMTPEELGEHKKYLEFKEASE 330
            KE L+ GEK+C+ C   +    C  C+D +CD+C A  H  G  K H    Y E+++GWQ + GR   E T+YYN +T E+R++KPEE M  +EL EH  +L+F+ A+E
Sbjct: 1224 KEELKSGEKHCLVCGKAKASVVCKVCRDEYCDKCFAETHSHGQLKEHPTIPYLEAKQGWQKMVGRVAGEQTYYYNVSTGETRYDKPEEFMLEDELREHHNFLKFQLAAE 1332
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BLAST of mRNA_C-tenellus_contig10384.1.1 vs. uniprot
Match: A0A6H5KED0_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.120e-12
Identity = 49/137 (35.77%), Postives = 68/137 (49.64%), Query Frame = 1 
Query:   13 LEMGEKY----CVDCDFRRVKWACLQCKD-AFCDECSARIHGSGHRKTHSLTKYAESRK------------GWQTVE-------------GRTENEPTFYYNATTAESRFEKPEELMTPEELGEHKKYLEFKEASEK 333
            LE GE +    C  C  R  +  C+ C++  +C  C    H       H + K A+S K            G  T               GRT+NEPT+Y+NA+T ES F+KP++LM PEEL EH ++L++KE SEK
Sbjct:   36 LETGETHWFPPCEQCYKREGEKICMDCEEQVYCGRCWTMAHKEEDMAGH-VWKGADSGKMPCAASVTLEFTGVDTARTTKSRRTPSPRKAGRTDNEPTYYFNASTGESTFDKPQDLMLPEELVEHLRFLKYKETSEK 171
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10384.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDT6_ECTSI6.720e-4767.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2SF21_9STRA7.720e-2443.12Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6H5KED0_9PHAE5.120e-1235.77WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10384contigC-tenellus_contig10384:3614..4710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra95946
PFAMsIQ,WW
Model size336
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.87e-07
EggNOG OGs28PKX@1|root,2QW92@2759|Eukaryota,3Q723@4776|Peronosporales
DescriptionIQ calmodulin-binding motif
Cds size318
COG categoryZ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789128.9739842-UTR-C-tenellus_contig10384:3613..36311680789128.9739842-UTR-C-tenellus_contig10384:3613..3631Choristocarpus tenellus KU2346UTRC-tenellus_contig10384 3614..3631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789128.9841588-CDS-C-tenellus_contig10384:3631..36971680789128.9841588-CDS-C-tenellus_contig10384:3631..3697Choristocarpus tenellus KU2346CDSC-tenellus_contig10384 3632..3697 +
1680789128.9946434-CDS-C-tenellus_contig10384:4107..42061680789128.9946434-CDS-C-tenellus_contig10384:4107..4206Choristocarpus tenellus KU2346CDSC-tenellus_contig10384 4108..4206 +
1680789129.0035996-CDS-C-tenellus_contig10384:4557..47101680789129.0035996-CDS-C-tenellus_contig10384:4557..4710Choristocarpus tenellus KU2346CDSC-tenellus_contig10384 4558..4710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10384.1.1prot_C-tenellus_contig10384.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10384 3632..4710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10384.1.1

>prot_C-tenellus_contig10384.1.1 ID=prot_C-tenellus_contig10384.1.1|Name=mRNA_C-tenellus_contig10384.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=106bp
MGEKYCVDCDFRRVKWACLQCKDAFCDECSARIHGSGHRKTHSLTKYAES
RKGWQTVEGRTENEPTFYYNATTAESRFEKPEELMTPEELGEHKKYLEFK
EASEK*
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mRNA from alignment at C-tenellus_contig10384:3614..4710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10384.1.1 ID=mRNA_C-tenellus_contig10384.1.1|Name=mRNA_C-tenellus_contig10384.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1097bp|location=Sequence derived from alignment at C-tenellus_contig10384:3614..4710+ (Choristocarpus tenellus KU2346)
GGTAAAGAGGTTCTCGAGATGGGAGAAAAATACTGTGTGGATTGTGATTT
CCGAAGGGTCAAGTGGGCTTGTCTCCAGTGCAAGGTACTCTGGGGTCCAG
CAGTTACAACCTATCTGTTGCTTGAGTATTGCATACTTGAAGAGTTTTTT
TTTGTTGTTCTATTGATGGTACAAAACTCCAACTTGCCCTTGTTATATCC
ACTGCTGTCCCAGCCCAAACACTTGGAAGACACCCACACTACATGTTTAT
GTTTGTGTAAGCATTTTGCGAGGTTATACATTGCTTCAAAGACTGTTGGA
TTTTAATTCCGTTAACACTTTTTGGGGGTTAAGGACGACATATCCAGTTT
GATAAATACTCCCACAAATATGGGAGAGTATAACTGATGAATTACATACA
TCCGTCCACAGCTGGAAAAATGGAGTATTTTCTTCAGTAGTGAACTTGCT
TCTTGGACAGAGTCTCAGCTTGTTCTGCTTCTAACAACTTTCAGGATGCA
TTTTGTGATGAATGCAGTGCCCGTATCCATGGCAGTGGCCACCGGAAGAC
TCACTCTTTGACAAAATATGCTGAGTCCAGGAAAGGGTGGCAGGTATGTG
AGGAGTAGACTGAAAAGTATACCATATGTTATCGCACAGGAAAGGGTATA
GTATACATAGCTCTGCTTGAGCAGCATTGGTTAGGGTTAAGATTAGGGTT
AGGGTTAGGACTCGTGTGCACGCTTGTGAGTAGAGCTGTGCTTGGAAGCG
ATTGCTTTTGTGAATGCAATTCGTAAATTCGTGCTATCATGTGTGCAAGA
AACGTGAGGTGGTCATATTTCGTGCAGTATAGTCCCCAACTGCAAAGAAC
TGCGTGTAACCGCAACAAACAACAGACTCCTCCCATCTCCCCCACTCCTA
CCCCCCCAATTCTTAATCATCCGTTGTCTTTTTTCCCTCAACAGACTGTG
GAAGGGCGCACAGAAAATGAGCCCACGTTCTACTACAATGCCACAACAGC
AGAAAGTCGCTTCGAAAAACCAGAAGAGCTAATGACTCCAGAGGAGCTTG
GAGAACACAAGAAATATCTTGAATTCAAGGAGGCCAGTGAGAAGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10384:3614..4710+

>mRNA_C-tenellus_contig10384.1.1 ID=mRNA_C-tenellus_contig10384.1.1|Name=mRNA_C-tenellus_contig10384.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=318bp|location=Sequence derived from alignment at C-tenellus_contig10384:3614..4710+ (Choristocarpus tenellus KU2346)
ATGGGAGAAAAATACTGTGTGGATTGTGATTTCCGAAGGGTCAAGTGGGC
TTGTCTCCAGTGCAAGGATGCATTTTGTGATGAATGCAGTGCCCGTATCC
ATGGCAGTGGCCACCGGAAGACTCACTCTTTGACAAAATATGCTGAGTCC
AGGAAAGGGTGGCAGACTGTGGAAGGGCGCACAGAAAATGAGCCCACGTT
CTACTACAATGCCACAACAGCAGAAAGTCGCTTCGAAAAACCAGAAGAGC
TAATGACTCCAGAGGAGCTTGGAGAACACAAGAAATATCTTGAATTCAAG
GAGGCCAGTGAGAAGTGA
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