mRNA_C-tenellus_contig10382.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10382.2.1
Unique NamemRNA_C-tenellus_contig10382.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10382.2.1 vs. uniprot
Match: D7FVU5_ECTSI (MPN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU5_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.320e-15
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 3 
Query:  996 LMSKLFCAAVYQKSLGLLMGESTAPLAHTLRSQLDNLRVRESVLKQECDALRKQLSPSQVDKATKMISERLPAARSAN-SAFQS--EGEVAAPRLDALKFARVGCHLIRRGSIR--NTHMIFRVYRDY 1364
            L+SK+FC+AVY KSL  L G+S  PLA TLRSQL+ L+ R + L+Q    LR  L+P +++ A    S +L A  SA   AFQ+  EGE+  PR DAL+FAR G  L R+  +   NT +  RV+R+Y
Sbjct:  238 LLSKIFCSAVYSKSLAALSGDSAVPLAQTLRSQLNILQNRAAALEQHQVELRALLTPGELEGALASASAKLRAPCSAGIGAFQAKHEGELDIPRADALRFARQGGPLRRQRILMSANTAVNVRVFREY 365
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10382.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVU5_ECTSI6.320e-1546.88MPN domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10382contigC-tenellus_contig10382:1229..4337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FVU5
PFAMsJAB
Model size1426
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00901,ko:K11864
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko03440,ko04070,ko04072,ko04621,ko05231,map00561,map00564,map01100,map01110,map03440,map04070,map04072,map04621,map05231
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.6e-18
EggNOG OGsCOG1310@1|root,KOG1555@2759|Eukaryota
Ec32 ortholog descriptionJAB1/MPN/MOV34 metalloenzyme domain
Ec32 orthologEc-01_002190.1
EC2.7.1.107
Descriptionmetallopeptidase activity
Cds size438
COG categoryADK
BRITEko00000,ko00001,ko01000,ko01002,ko03036,ko03400,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789128.8172445-UTR-C-tenellus_contig10382:1228..22141680789128.8172445-UTR-C-tenellus_contig10382:1228..2214Choristocarpus tenellus KU2346UTRC-tenellus_contig10382 1229..2214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789128.8291354-CDS-C-tenellus_contig10382:2214..23431680789128.8291354-CDS-C-tenellus_contig10382:2214..2343Choristocarpus tenellus KU2346CDSC-tenellus_contig10382 2215..2343 +
1680789128.8418489-CDS-C-tenellus_contig10382:3186..33121680789128.8418489-CDS-C-tenellus_contig10382:3186..3312Choristocarpus tenellus KU2346CDSC-tenellus_contig10382 3187..3312 +
1680789128.8539977-CDS-C-tenellus_contig10382:4154..43371680789128.8539977-CDS-C-tenellus_contig10382:4154..4337Choristocarpus tenellus KU2346CDSC-tenellus_contig10382 4155..4337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10382.2.1prot_C-tenellus_contig10382.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10382 2215..4337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10382.2.1

>prot_C-tenellus_contig10382.2.1 ID=prot_C-tenellus_contig10382.2.1|Name=mRNA_C-tenellus_contig10382.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=146bp
MDGLMSKLFCAAVYQKSLGLLMGESTAPLAHTLRSQLDNLRVRESVLKQE
CDALRKQLSPSQVDKATKMISERLPAARSANSAFQSEGEVAAPRLDALKF
ARVGCHLIRRGSIRNTHMIFRVYRDYPDLYPPSPPSATPKSSHWEE
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mRNA from alignment at C-tenellus_contig10382:1229..4337+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10382.2.1 ID=mRNA_C-tenellus_contig10382.2.1|Name=mRNA_C-tenellus_contig10382.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3109bp|location=Sequence derived from alignment at C-tenellus_contig10382:1229..4337+ (Choristocarpus tenellus KU2346)
GGGGGGGGGGGGGGGTGGGGCATAGATACAAAGTTGCTTGAGACTACAGA
GCTTGGATGATGCACCCAGTGTGACCTACTGATTTGAAAGTGTGATTAGT
TTCATCAAGAACTACCATAAATATGTTGTGGTAAGAAACCAGAGACCCTC
TACAGTGCTGTGGAGCACTTGTGGATCCTCCTGATCCTTCCGCTTGAGTG
AGAACTGTATTTGTGAATGGTTCCGTTACTGTTGAAATTTTTAAATTGAA
GTGGGATTCATTTTAAAACAATGCCTATATATGCTTTGGGGCGGGCTGCT
TAATCATAGCCTAATCCAGGGAATTTCTCGGTTCTGCCGGCTAGGAAGTC
ATCGAAAGTTTTGCAGTACTACAAGAGGTATACCCTTTTTCCACGTGGTT
CTTAAGTTTACTGGCAATGGTATAATTGATTTGAAATTGTACCATCAATA
TTTTGTTGTCTAGTCACACTGAATTGTACCATCATTAGTTCGTTGTGTAA
TCAAACTGTGCCACTGACAAAACGTTTGGTATTATTTTTATTTACCCTAT
TTTAGATTGCTGGATCCTGGCTCTCAATTGAAAAGGTTGTAGTAATGTGC
AATATTTAGTGCTGTTTTTTTTTTGCAATCCATCTTTCGTAGGAAATTTC
CGTGTTGGATCCAAACACGATGTGCAAAGAGCCATCCTGTGTCAAGATAG
TAGCAACTATCAGTTTGATACGATAGTTTGTTGCAGTACTATATACCCCT
CGTTATGAGGTTGCCTGATGATGGAATGTGACGCGTTTGATGATATTGCG
TTGTTGTTTTATCTTCCTCTCTGATACAGATACCCGAGGTAAAAGAAAAT
GGAGGTGACATGTATCCATCCCCCCCCTGATATCCCCTCTGATATCCCCT
CTGATATGTGTGCACATGTTCTTCCCCTACGTCACCCTTTCCTTGTACGC
TGTGTGCGTGGTCTCTCTTGAAGTAATGGGACAGATATGGATGGACTGAT
GTCGAAACTGTTCTGTGCAGCGGTGTACCAAAAGAGTCTTGGTCTGCTCA
TGGGGGAGTCCACTGCCCCCCTCGCCCACACACTCCGATCACAGCTAGAC
AACCTTAGGGTTAGGGTGAGCATCCCTCGCCTTTTAGGGTTGGAAAGGAC
AGGAATATCTAGTTGGGGGAAGGGCAAAGGGGAAGAGGATGCTGGGTATT
CACCTGTGTAGAAATTTGCTTGGAGAATAGAGTCTCGCCAAGTTCTCTAC
TGTAGGAGTTGGGATTTTTTTTGCTGTGATGATTTTTTAAGGGAACCAGA
TTTTTTTTTAGGTGAGGACTGCTCCAGGATTATTCTTTCACGATGCTCGA
CGGATCAGGCGTTAGTGCTCAGTCTAGCTACCAGTGTGACACTGGTGGGG
GTGGGAGATGATGCAAAAAAGTGTCAAGTTTGCTATAGCTCTCTGGGTGC
AGTTCCGCCTGCTTGATCAATGCCGCAAAGCTTGGACAATCGGCGCATCT
GTACATTCACCTTTGTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCC
CCATGATTCCCTAAATCCCCCCATTATTTGATCCTTCGCTATACTTGTGT
GGTTAGGGTTAGGGTTAGGGTTAGGGTTTGATGCTTTTTTTTCACTGCCT
GATCTCTCTCCCGTCTTCATCTTCATTGGTGTGTACAATCAGTCCCATGT
GATCGTACAATCAGTACATCCAGTACGCCTTTACGCCTTTTTGAAAAACC
TATATGCAGAACCCTGTGCCTCCACTCCCATGTGATCCTTCTAGATCTAT
ATGTTTTTTTTCAGTCCTTTTGTACACCTAGACGATCCCCTAATCTTGTA
AAAAACTTTTGTTTTTATTTTTGTTACTTGATTCTTCTTTTTTTGTTTTG
CTGTGATTTGACCCGTACATGTGTTGATGATGTGATTTGACCCGTCTGGT
GTGGGTAGGAGTCTGTCCTGAAGCAGGAGTGTGATGCCTTGCGGAAGCAG
CTCTCTCCCTCTCAAGTGGACAAGGCTACAAAGATGATATCGGAGAGGTT
GCCAGCTGCACGGTCTGCCAACTCAGCCTTTCAGGTGTATTTTTTAAAAT
AGAATTGTTTATCATCATTGTTTTTTGTAATTATTATCATTGTTGCCTTG
GAATTAGTTTAGTGTCATCTCGTGATTTTTTTTTTGCTACAGAACCTGAA
AAGGTACTACGATATTACTGGGAAGTCCTGTCCATACCTGAATCAGGCTC
ATCTATGGCGTGGAGTAGAGGGTATAGGATGAGGGCCATAGCAGTACACA
ATAGTTGGAGTGGGTTTGTGATACGGAACTCTCTCATCACCTCTTTGATA
TTTAGCTGGAATTGTGATTTTATCAGGGGAAAGTATAGTATCAGGTAATT
CGTAGTCCCTTTTTTGATTCCATTTTATTCCTCAAGTCGAGTGATTCATG
AAGGGTGGGGGGGGGTCCGTGAGAAACACTTGACATGGAAGGCATATGAA
TTCAACTTCCTGAAAAAAAGTAAAAAGGACGGAGAGAAGTAACTGCTGTT
GGAGCCAAAGTGTCTTTTAGAGGGTAGAGGCGCATCCATTTGGACCCAAG
ATCCAATGCTGCGATTTTGATGTAATTAGGACTATCATGTTTGTTCAGAA
GTGTCAATATCCCTCTTCCGGACTCGTCTTTTCACAACGCATACATTTTA
CCAACTCCAAAACATCTCCGAGTAGGTCAAATGTCACAACAACAACAAAA
AACTCCATGGGAAGCCCTGACCAGCGCAATAATGGACAAACAGGGCAAAA
CTTGTCCATAGCCTTCTAAGATGCTCTCACTGGTCAGGGCTCTCAACCAG
AAACCCTCCTGTCCCTTTGTCCTCTTCATTATCTCCTTTTTGTGCATATG
CCATTTTTGGGGGGATGCCAACCCAGTCTGAGGGCGAAGTTGCTGCTCCC
CGTTTAGATGCACTGAAGTTTGCAAGGGTGGGGTGTCATCTTATTCGAAG
AGGATCTATCCGCAACACACACATGATTTTCAGGGTTTACAGAGACTATC
CAGATCTCTACCCGCCTTCACCTCCGTCGGCAACTCCAAAATCGAGTCAT
TGGGAGGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10382:1229..4337+

>mRNA_C-tenellus_contig10382.2.1 ID=mRNA_C-tenellus_contig10382.2.1|Name=mRNA_C-tenellus_contig10382.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=438bp|location=Sequence derived from alignment at C-tenellus_contig10382:1229..4337+ (Choristocarpus tenellus KU2346)
ATGGATGGACTGATGTCGAAACTGTTCTGTGCAGCGGTGTACCAAAAGAG
TCTTGGTCTGCTCATGGGGGAGTCCACTGCCCCCCTCGCCCACACACTCC
GATCACAGCTAGACAACCTTAGGGTTAGGGAGTCTGTCCTGAAGCAGGAG
TGTGATGCCTTGCGGAAGCAGCTCTCTCCCTCTCAAGTGGACAAGGCTAC
AAAGATGATATCGGAGAGGTTGCCAGCTGCACGGTCTGCCAACTCAGCCT
TTCAGTCTGAGGGCGAAGTTGCTGCTCCCCGTTTAGATGCACTGAAGTTT
GCAAGGGTGGGGTGTCATCTTATTCGAAGAGGATCTATCCGCAACACACA
CATGATTTTCAGGGTTTACAGAGACTATCCAGATCTCTACCCGCCTTCAC
CTCCGTCGGCAACTCCAAAATCGAGTCATTGGGAGGAG
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