prot_C-tenellus_contig10382.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10382.2.1
Unique Nameprot_C-tenellus_contig10382.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length146
Homology
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BLAST of mRNA_C-tenellus_contig10382.2.1 vs. uniprot
Match: D7FVU5_ECTSI (MPN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU5_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 4.630e-17
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 0 
Query:    4 LMSKLFCAAVYQKSLGLLMGESTAPLAHTLRSQLDNLRVRESVLKQECDALRKQLSPSQVDKATKMISERLPAARSAN-SAFQS--EGEVAAPRLDALKFARVGCHLIRRGSIR--NTHMIFRVYRDY 126
            L+SK+FC+AVY KSL  L G+S  PLA TLRSQL+ L+ R + L+Q    LR  L+P +++ A    S +L A  SA   AFQ+  EGE+  PR DAL+FAR G  L R+  +   NT +  RV+R+Y
Sbjct:  238 LLSKIFCSAVYSKSLAALSGDSAVPLAQTLRSQLNILQNRAAALEQHQVELRALLTPGELEGALASASAKLRAPCSAGIGAFQAKHEGELDIPRADALRFARQGGPLRRQRILMSANTAVNVRVFREY 365
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10382.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVU5_ECTSI4.630e-1746.88MPN domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..57
IPR040749BRCC36, C-terminal helical domainPFAMPF18110BRCC36_Ccoord: 3..53
e-value: 5.2E-12
score: 45.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10382contigC-tenellus_contig10382:2215..4337 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10382.2.1mRNA_C-tenellus_contig10382.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10382 1229..4337 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10382.2.1 ID=prot_C-tenellus_contig10382.2.1|Name=mRNA_C-tenellus_contig10382.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=146bp
MDGLMSKLFCAAVYQKSLGLLMGESTAPLAHTLRSQLDNLRVRESVLKQE
CDALRKQLSPSQVDKATKMISERLPAARSANSAFQSEGEVAAPRLDALKF
ARVGCHLIRRGSIRNTHMIFRVYRDYPDLYPPSPPSATPKSSHWEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040749BRCC36_C