mRNA_C-tenellus_contig10363.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10363.1.1
Unique NamemRNA_C-tenellus_contig10363.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10363.1.1 vs. uniprot
Match: D8LGF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF3_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 5.580e-19
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 MDGSASEEFRPHRRVLTPGFSGSTHPRVQGLRRINQQLPPTPRPQGIQPNPEAANRSGYHMPDPGLLV 204
            M GSA+E+FRP RRVLTPGFSG+   R QGL RI      TPRP G++ N +A+ RSGY +PDPGL++
Sbjct:    1 MAGSATEQFRPCRRVLTPGFSGTEEARPQGLARIESSPRVTPRPTGLRTNAKASRRSGYDIPDPGLVL 68
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10363.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGF3_ECTSI5.580e-1958.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10363contigC-tenellus_contig10363:1749..1952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size204
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003840.1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.861867-CDS-C-tenellus_contig10363:1748..19521680789127.861867-CDS-C-tenellus_contig10363:1748..1952Choristocarpus tenellus KU2346CDSC-tenellus_contig10363 1749..1952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10363.1.1prot_C-tenellus_contig10363.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10363 1749..1952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10363.1.1

>prot_C-tenellus_contig10363.1.1 ID=prot_C-tenellus_contig10363.1.1|Name=mRNA_C-tenellus_contig10363.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=68bp
MDGSASEEFRPHRRVLTPGFSGSTHPRVQGLRRINQQLPPTPRPQGIQPN
PEAANRSGYHMPDPGLLV
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mRNA from alignment at C-tenellus_contig10363:1749..1952-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10363.1.1 ID=mRNA_C-tenellus_contig10363.1.1|Name=mRNA_C-tenellus_contig10363.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=204bp|location=Sequence derived from alignment at C-tenellus_contig10363:1749..1952- (Choristocarpus tenellus KU2346)
ATGGATGGTTCTGCGAGTGAGGAGTTCAGACCTCACCGACGTGTCCTGAC
ACCAGGTTTCTCGGGCTCTACTCACCCTCGTGTCCAAGGCCTTCGCAGGA
TAAACCAACAGCTGCCTCCAACCCCCAGACCACAGGGAATCCAACCAAAT
CCTGAGGCAGCCAACCGCTCTGGCTACCATATGCCAGATCCTGGCCTCTT
GGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig10363:1749..1952-

>mRNA_C-tenellus_contig10363.1.1 ID=mRNA_C-tenellus_contig10363.1.1|Name=mRNA_C-tenellus_contig10363.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=204bp|location=Sequence derived from alignment at C-tenellus_contig10363:1749..1952- (Choristocarpus tenellus KU2346)
ATGGATGGTTCTGCGAGTGAGGAGTTCAGACCTCACCGACGTGTCCTGAC
ACCAGGTTTCTCGGGCTCTACTCACCCTCGTGTCCAAGGCCTTCGCAGGA
TAAACCAACAGCTGCCTCCAACCCCCAGACCACAGGGAATCCAACCAAAT
CCTGAGGCAGCCAACCGCTCTGGCTACCATATGCCAGATCCTGGCCTCTT
GGTG
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