Homology
BLAST of mRNA_C-tenellus_contig10363.1.1 vs. uniprot
Match:
D8LGF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF3_ECTSI)
HSP 1 Score: 82.8 bits (203), Expect = 5.580e-19
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 1
Query: 1 MDGSASEEFRPHRRVLTPGFSGSTHPRVQGLRRINQQLPPTPRPQGIQPNPEAANRSGYHMPDPGLLV 204
M GSA+E+FRP RRVLTPGFSG+ R QGL RI TPRP G++ N +A+ RSGY +PDPGL++
Sbjct: 1 MAGSATEQFRPCRRVLTPGFSGTEEARPQGLARIESSPRVTPRPTGLRTNAKASRRSGYDIPDPGLVL 68
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10363.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 5.58e-19 / Id = 58.82 Sequence D8LGF3_ECTSI
Match Name E-value Identity Description
D8LGF3_ECTSI 5.580e-19 58.82 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 1 Model size 204 Hectar predicted targeting category other localisation Exons 1 Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-16_003840.1 Cds size 204
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789127.861867-CDS-C-tenellus_contig10363:1748..1952 1680789127.861867-CDS-C-tenellus_contig10363:1748..1952 Choristocarpus tenellus KU2346 CDS C-tenellus_contig10363 1749..1952 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10363.1.1
>prot_C-tenellus_contig10363.1.1 ID=prot_C-tenellus_contig10363.1.1|Name=mRNA_C-tenellus_contig10363.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=68bp
MDGSASEEFRPHRRVLTPGFSGSTHPRVQGLRRINQQLPPTPRPQGIQPN back to top mRNA from alignment at C-tenellus_contig10363:1749..1952-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10363.1.1 ID=mRNA_C-tenellus_contig10363.1.1|Name=mRNA_C-tenellus_contig10363.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=204bp|location=Sequence derived from alignment at C-tenellus_contig10363:1749..1952- (Choristocarpus tenellus KU2346)ATGGATGGTTCTGCGAGTGAGGAGTTCAGACCTCACCGACGTGTCCTGAC
ACCAGGTTTCTCGGGCTCTACTCACCCTCGTGTCCAAGGCCTTCGCAGGA
TAAACCAACAGCTGCCTCCAACCCCCAGACCACAGGGAATCCAACCAAAT
CCTGAGGCAGCCAACCGCTCTGGCTACCATATGCCAGATCCTGGCCTCTT
GGTG back to top Coding sequence (CDS) from alignment at C-tenellus_contig10363:1749..1952-
>mRNA_C-tenellus_contig10363.1.1 ID=mRNA_C-tenellus_contig10363.1.1|Name=mRNA_C-tenellus_contig10363.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=204bp|location=Sequence derived from alignment at C-tenellus_contig10363:1749..1952- (Choristocarpus tenellus KU2346) back to top