mRNA_C-tenellus_contig10362.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10362.1.1
Unique NamemRNA_C-tenellus_contig10362.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10362.1.1 vs. uniprot
Match: A0A6H5L1E0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1E0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.350e-18
Identity = 62/114 (54.39%), Postives = 74/114 (64.91%), Query Frame = 3 
Query:  678 PGQHLGAYAYPG-------APQP-----QTKTPQQVAEEAIKKVQAQL---ESVAAEGGGGGTEGTGYLHGSLIGKREKERILKAAEKNEQYVQRKDEIARRKRLGIPLDGLVE 974
            PGQ LGAYAYPG       AP P     Q  TPQQVA+EAI K  A +   +    + G       GY+HG+LIGK EK R+ +AA KNE YV+RKDEIARRKRLG+PLDGL++
Sbjct:  210 PGQTLGAYAYPGVGVAPVAAPAPAAGQQQQLTPQQVAQEAIAKTMAAMKERQEQQLQPGQVLDNRRGYIHGNLIGKMEKARLERAAAKNENYVRRKDEIARRKRLGLPLDGLID 323
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BLAST of mRNA_C-tenellus_contig10362.1.1 vs. uniprot
Match: D7FR18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR18_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.230e-11
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 3 
Query:  831 GYLHGSLIGKREKERILKAAEKNEQYVQRKDEIARRKRLGIPLDGLVE 974
            GY+HG+LIGK EK R+ +AA KNE YV+RKDEIARRKRLG+PLDGL++
Sbjct:   23 GYIHGNLIGKMEKARLERAAAKNENYVRRKDEIARRKRLGLPLDGLID 70
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10362.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1E0_9PHAE2.350e-1854.39RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FR18_ECTSI1.230e-1172.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10362contigC-tenellus_contig10362:3..2446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1017
Hectar predicted targeting categoryother localisation
Exons3
Cds size900
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.7958229-CDS-C-tenellus_contig10362:2..1021680789127.7958229-CDS-C-tenellus_contig10362:2..102Choristocarpus tenellus KU2346CDSC-tenellus_contig10362 3..102 -
1680789127.8047388-CDS-C-tenellus_contig10362:979..10351680789127.8047388-CDS-C-tenellus_contig10362:979..1035Choristocarpus tenellus KU2346CDSC-tenellus_contig10362 980..1035 -
1680789127.8133986-CDS-C-tenellus_contig10362:1586..23301680789127.8133986-CDS-C-tenellus_contig10362:1586..2330Choristocarpus tenellus KU2346CDSC-tenellus_contig10362 1587..2330 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.8224998-UTR-C-tenellus_contig10362:2330..24461680789127.8224998-UTR-C-tenellus_contig10362:2330..2446Choristocarpus tenellus KU2346UTRC-tenellus_contig10362 2331..2446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10362.1.1prot_C-tenellus_contig10362.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10362 3..2330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10362.1.1

>prot_C-tenellus_contig10362.1.1 ID=prot_C-tenellus_contig10362.1.1|Name=mRNA_C-tenellus_contig10362.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=300bp
MQHQHYAQAPGGHAQATQPVYNYGYGQVQMPIQGQAQTTMTTAPTQYPQQ
QYVQQQPPQQQQQSVANTSYTYPAYPHGWAQHPQTISPATTAHHPSTPVA
GPNPVQHYQGYGQHPHTSVYSQQQQQPQPQAQPQIQSQTQPQPQPQPQHP
HSQQQQHNPVVYAQPAAHAVPAAPSPQPTTQPVPSTVPGQHLGAYAYPGA
PQPQTKTPQQVAEEAIKKVQAQLESVAAEGGGGGTEGTGYLHGSLIGKRE
KERILKAAEKNEQYVQRKDEIARRKRLGIPLDGLVEPGAAGKGGGGGNSG
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mRNA from alignment at C-tenellus_contig10362:3..2446-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10362.1.1 ID=mRNA_C-tenellus_contig10362.1.1|Name=mRNA_C-tenellus_contig10362.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2444bp|location=Sequence derived from alignment at C-tenellus_contig10362:3..2446- (Choristocarpus tenellus KU2346)
GGTGTGAGGAATCTAGGAGGAGGGCGTAAATCGAAAAGCACGTTGTTGAG
ACGGCTACACCTCCCCTGTTCTCCAGGGGAGACCATCCTCGGTTTTGTTC
AGTTGACTGCCCAACGATGCAACACCAACACTATGCCCAGGCACCAGGGG
GTCATGCGCAGGCAACTCAACCAGTGTACAACTATGGCTATGGTCAGGTC
CAGATGCCGATCCAAGGTCAGGCGCAGACTACGATGACTACTGCTCCGAC
TCAATACCCTCAGCAGCAATACGTTCAGCAGCAACCGCCACAACAGCAGC
AGCAATCGGTAGCGAACACCAGTTATACATACCCAGCGTATCCGCATGGA
TGGGCTCAGCATCCTCAGACTATTAGTCCAGCCACCACCGCACACCATCC
CAGCACCCCTGTTGCCGGTCCCAACCCCGTGCAACACTACCAAGGGTACG
GGCAACACCCCCACACTTCAGTTTATTCTCAGCAGCAGCAGCAGCCACAG
CCACAAGCACAGCCGCAGATACAGTCGCAAACGCAGCCACAGCCGCAGCC
GCAGCCTCAGCATCCTCATTCTCAGCAACAACAGCACAATCCCGTTGTGT
ACGCACAGCCCGCTGCACATGCTGTGCCAGCTGCCCCATCTCCCCAGCCC
ACGACACAACCTGTCCCGTCGACCGTGCCGGGGCAGCACTTGGGAGCGTA
TGCATACCCGGGGGCGCCACAACCGCAGACCAAGACACCCCAGCAAGTTG
CAGAGGAGGCCATCAAGAAGGTGCAAGCCCAACTGGAGTCTGTGGCAGCG
GAAGGGGGGGGAGGCGGGACCGAGGGGACAGGTTACCTTCATGGATCTCT
AATCGGGAAGGTATGGTTAAATCTGAAAATGGGGTAGATTATTAGTACAT
TGTCGAGAACAAAGGGCACTGGATAGAGGTGTTTTCTCTCTGCAACTGTT
TTGTCGATTAGGGCTGTCTGAACATATAGCCCTCATCATATACGAAGGGT
ATGGAATCTCTCTTCTCTACATTTTTTACATTCGAACTTCGTGGTTGTGA
GACAGTAAAATGGAAACGTCTTGTTGCGAGTAGAGCATGAGGGATATGGT
GCGCGTTGATGGCATCATAGTTACTGGAATCATAACTTCAAATTTATCAA
CCCGGAGCCATGTCTTTTCTTTTCTTCATGATCGCGAAGTGGAGTGGAGC
TAATTCGTGAGGGTGTTTGGATGAATGCCCACCATGGAAGGCAGACAAAA
GTTTGTAGGATAGGAATGTTGGGCCTGTGCCTCGACTCCATTTCGCTCTT
ATTTTGCTTGTGGAAGTTATGTCTTTGGCTGGTCAGGTCACTCACGCATA
AGCACACACAAATGACCATCCCCCCCCTAACTCACGCATGAACATGTTGT
GTCAATTGCAGCGAGAAAAGGAAAGGATTCTCAAGGCGGCGGAAAAGAAT
GAGCAGTACGTTCAAAGGTAATCATTTTTAATTTAAATGAATTTGAAATG
TTCCAATTTGCTGCCTTGATGGAAAAGCTCACTCCTTGAAGTTAGGGAAA
GGGATGAGTGAATAGCACGTTGGGGTCATTTGGCATGTATGTTATCTTAC
AGTCAGAAGGGAGTGTTTGTGACTGCTGTGGTTATTATGGTGAGGAGGGA
GTTGGGTTTGGGGGTGGGCAGGGATAAAGCTGTTTCTGGGTGCTTGTGAA
GTTCGAGGGGTTTCTATAAAGTGTTTGGCGTAGGCGGGGTGGCTGATTGG
CAGGCCCCAATGACTGAACATTTGCGTGACAACAGCTGATAGTATTTTTT
TAATGCAATTGCCAGGATAGCCTCTTCCAAACACTTGAGTTTTCACTTGG
CTGTAACACAAAAGTTGTCCTAATATTTTAAAGGTCCTCGACTAATTCTC
CACCCAATTTTTGCAGTGCATGATAAGTGTATCCTGTGAGTTTGCTACAA
GCTTTACAAGTGTGCATAAGGGGCTATATGTATTTTTTTTTTGTTAAATA
TGTGTGTGTGTGTGTGTGTGTTGAGGATTTTCATTGGAGAGAACGTTCAT
AGGAAGTGTGATTTTAGGGTTAGGGTTAGGACACATAATCAACCCTGTGC
ATGGATAGGACAATACTTTTGCACTAGATACATCCCTCTCAGAATCCTGT
GGAACATTATTATTATTATTATTATTATTATTATTTATTCCCGCTGTACA
TGTAGAATGCCGTATGTTGATTCGAAAAAAAAGAAGGGTGTTTTGTGCTG
AGTTTTTTTTTGTTAACATAGTTCTACTATACCTTGAGGTTCCCATCGTT
GGGTATGGCACATTTCAACCACATGAGCACTTGTTTTAACTCAGGAAGGA
TGAGATCGCAAGACGAAAACGCCTTGGTATTCCACTGGATGGGCTAGTGG
AACCGGGGGCAGCTGGTAAAGGAGGGGGGGGGGGCAACAGTGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig10362:3..2446-

>mRNA_C-tenellus_contig10362.1.1 ID=mRNA_C-tenellus_contig10362.1.1|Name=mRNA_C-tenellus_contig10362.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=900bp|location=Sequence derived from alignment at C-tenellus_contig10362:3..2446- (Choristocarpus tenellus KU2346)
ATGCAACACCAACACTATGCCCAGGCACCAGGGGGTCATGCGCAGGCAAC
TCAACCAGTGTACAACTATGGCTATGGTCAGGTCCAGATGCCGATCCAAG
GTCAGGCGCAGACTACGATGACTACTGCTCCGACTCAATACCCTCAGCAG
CAATACGTTCAGCAGCAACCGCCACAACAGCAGCAGCAATCGGTAGCGAA
CACCAGTTATACATACCCAGCGTATCCGCATGGATGGGCTCAGCATCCTC
AGACTATTAGTCCAGCCACCACCGCACACCATCCCAGCACCCCTGTTGCC
GGTCCCAACCCCGTGCAACACTACCAAGGGTACGGGCAACACCCCCACAC
TTCAGTTTATTCTCAGCAGCAGCAGCAGCCACAGCCACAAGCACAGCCGC
AGATACAGTCGCAAACGCAGCCACAGCCGCAGCCGCAGCCTCAGCATCCT
CATTCTCAGCAACAACAGCACAATCCCGTTGTGTACGCACAGCCCGCTGC
ACATGCTGTGCCAGCTGCCCCATCTCCCCAGCCCACGACACAACCTGTCC
CGTCGACCGTGCCGGGGCAGCACTTGGGAGCGTATGCATACCCGGGGGCG
CCACAACCGCAGACCAAGACACCCCAGCAAGTTGCAGAGGAGGCCATCAA
GAAGGTGCAAGCCCAACTGGAGTCTGTGGCAGCGGAAGGGGGGGGAGGCG
GGACCGAGGGGACAGGTTACCTTCATGGATCTCTAATCGGGAAGCGAGAA
AAGGAAAGGATTCTCAAGGCGGCGGAAAAGAATGAGCAGTACGTTCAAAG
GAAGGATGAGATCGCAAGACGAAAACGCCTTGGTATTCCACTGGATGGGC
TAGTGGAACCGGGGGCAGCTGGTAAAGGAGGGGGGGGGGGCAACAGTGGT
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