prot_C-tenellus_contig10362.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig10362.1.1
Unique Name	prot_C-tenellus_contig10362.1.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	300

Homology

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BLAST of mRNA_C-tenellus_contig10362.1.1 vs. uniprot
Match: A0A6H5L1E0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1E0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.140e-18
Identity = 62/114 (54.39%), Postives = 74/114 (64.91%), Query Frame = 0

Query:  188 PGQHLGAYAYPG-------APQP-----QTKTPQQVAEEAIKKVQAQL---ESVAAEGGGGGTEGTGYLHGSLIGKREKERILKAAEKNEQYVQRKDEIARRKRLGIPLDGLVE 286
            PGQ LGAYAYPG       AP P     Q  TPQQVA+EAI K  A +   +    + G       GY+HG+LIGK EK R+ +AA KNE YV+RKDEIARRKRLG+PLDGL++
Sbjct:  210 PGQTLGAYAYPGVGVAPVAAPAPAAGQQQQLTPQQVAQEAIAKTMAAMKERQEQQLQPGQVLDNRRGYIHGNLIGKMEKARLERAAAKNENYVRRKDEIARRKRLGLPLDGLID 323

[Close]

BLAST of mRNA_C-tenellus_contig10362.1.1 vs. uniprot
Match: D7FR18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR18_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 8.040e-12
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 0

Query:  239 GYLHGSLIGKREKERILKAAEKNEQYVQRKDEIARRKRLGIPLDGLVE 286
            GY+HG+LIGK EK R+ +AA KNE YV+RKDEIARRKRLG+PLDGL++
Sbjct:   23 GYIHGNLIGKMEKARLERAAAKNENYVRRKDEIARRKRLGLPLDGLID 70

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig10362.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig10362.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L1E0_9PHAE	1.140e-18	54.39	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7FR18_ECTSI	8.040e-12	72.92	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 209..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..142

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig10362	contig	C-tenellus_contig10362:3..2330 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig10362.1.1	mRNA_C-tenellus_contig10362.1.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig10362 3..2446 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig10362.1.1 ID=prot_C-tenellus_contig10362.1.1|Name=mRNA_C-tenellus_contig10362.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=300bp
MQHQHYAQAPGGHAQATQPVYNYGYGQVQMPIQGQAQTTMTTAPTQYPQQ
QYVQQQPPQQQQQSVANTSYTYPAYPHGWAQHPQTISPATTAHHPSTPVA
GPNPVQHYQGYGQHPHTSVYSQQQQQPQPQAQPQIQSQTQPQPQPQPQHP
HSQQQQHNPVVYAQPAAHAVPAAPSPQPTTQPVPSTVPGQHLGAYAYPGA
PQPQTKTPQQVAEEAIKKVQAQLESVAAEGGGGGTEGTGYLHGSLIGKRE
KERILKAAEKNEQYVQRKDEIARRKRLGIPLDGLVEPGAAGKGGGGGNSG