Homology
BLAST of mRNA_C-tenellus_contig10362.1.1 vs. uniprot
Match:
A0A6H5L1E0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1E0_9PHAE)
HSP 1 Score: 96.7 bits (239), Expect = 2.350e-18
Identity = 62/114 (54.39%), Postives = 74/114 (64.91%), Query Frame = 3
Query: 678 PGQHLGAYAYPG-------APQP-----QTKTPQQVAEEAIKKVQAQL---ESVAAEGGGGGTEGTGYLHGSLIGKREKERILKAAEKNEQYVQRKDEIARRKRLGIPLDGLVE 974
PGQ LGAYAYPG AP P Q TPQQVA+EAI K A + + + G GY+HG+LIGK EK R+ +AA KNE YV+RKDEIARRKRLG+PLDGL++
Sbjct: 210 PGQTLGAYAYPGVGVAPVAAPAPAAGQQQQLTPQQVAQEAIAKTMAAMKERQEQQLQPGQVLDNRRGYIHGNLIGKMEKARLERAAAKNENYVRRKDEIARRKRLGLPLDGLID 323
BLAST of mRNA_C-tenellus_contig10362.1.1 vs. uniprot
Match:
D7FR18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR18_ECTSI)
HSP 1 Score: 74.3 bits (181), Expect = 1.230e-11
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 3
Query: 831 GYLHGSLIGKREKERILKAAEKNEQYVQRKDEIARRKRLGIPLDGLVE 974
GY+HG+LIGK EK R+ +AA KNE YV+RKDEIARRKRLG+PLDGL++
Sbjct: 23 GYIHGNLIGKMEKARLERAAAKNENYVRRKDEIARRKRLGLPLDGLID 70
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10362.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.35e-18 / Id = 54.39 Expect = 1.23e-11 / Id = 72.92 Sequence A0A6H5L1E0_9PHAE D7FR18_ECTSI
Match Name E-value Identity Description
A0A6H5L1E0_9PHAE 2.350e-18 54.39 RRM domain-containing protein n=1 Tax=Ectocarpus s... [more] D7FR18_ECTSI 1.230e-11 72.92 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 1 Model size 1017 Hectar predicted targeting category other localisation Exons 3 Cds size 900
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789127.7958229-CDS-C-tenellus_contig10362:2..102 1680789127.7958229-CDS-C-tenellus_contig10362:2..102 Choristocarpus tenellus KU2346 CDS C-tenellus_contig10362 3..102 - 1680789127.8047388-CDS-C-tenellus_contig10362:979..1035 1680789127.8047388-CDS-C-tenellus_contig10362:979..1035 Choristocarpus tenellus KU2346 CDS C-tenellus_contig10362 980..1035 - 1680789127.8133986-CDS-C-tenellus_contig10362:1586..2330 1680789127.8133986-CDS-C-tenellus_contig10362:1586..2330 Choristocarpus tenellus KU2346 CDS C-tenellus_contig10362 1587..2330 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789127.8224998-UTR-C-tenellus_contig10362:2330..2446 1680789127.8224998-UTR-C-tenellus_contig10362:2330..2446 Choristocarpus tenellus KU2346 UTR C-tenellus_contig10362 2331..2446 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10362.1.1
>prot_C-tenellus_contig10362.1.1 ID=prot_C-tenellus_contig10362.1.1|Name=mRNA_C-tenellus_contig10362.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=300bp
MQHQHYAQAPGGHAQATQPVYNYGYGQVQMPIQGQAQTTMTTAPTQYPQQ back to top mRNA from alignment at C-tenellus_contig10362:3..2446-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10362.1.1 ID=mRNA_C-tenellus_contig10362.1.1|Name=mRNA_C-tenellus_contig10362.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2444bp|location=Sequence derived from alignment at C-tenellus_contig10362:3..2446- (Choristocarpus tenellus KU2346)GGTGTGAGGAATCTAGGAGGAGGGCGTAAATCGAAAAGCACGTTGTTGAG
ACGGCTACACCTCCCCTGTTCTCCAGGGGAGACCATCCTCGGTTTTGTTC
AGTTGACTGCCCAACG ATGCAACACCAACACTATGCCCAGGCACCAGGGG
GTCATGCGCAGGCAACTCAACCAGTGTACAACTATGGCTATGGTCAGGTC
CAGATGCCGATCCAAGGTCAGGCGCAGACTACGATGACTACTGCTCCGAC
TCAATACCCTCAGCAGCAATACGTTCAGCAGCAACCGCCACAACAGCAGC
AGCAATCGGTAGCGAACACCAGTTATACATACCCAGCGTATCCGCATGGA
TGGGCTCAGCATCCTCAGACTATTAGTCCAGCCACCACCGCACACCATCC
CAGCACCCCTGTTGCCGGTCCCAACCCCGTGCAACACTACCAAGGGTACG
GGCAACACCCCCACACTTCAGTTTATTCTCAGCAGCAGCAGCAGCCACAG
CCACAAGCACAGCCGCAGATACAGTCGCAAACGCAGCCACAGCCGCAGCC
GCAGCCTCAGCATCCTCATTCTCAGCAACAACAGCACAATCCCGTTGTGT
ACGCACAGCCCGCTGCACATGCTGTGCCAGCTGCCCCATCTCCCCAGCCC
ACGACACAACCTGTCCCGTCGACCGTGCCGGGGCAGCACTTGGGAGCGTA
TGCATACCCGGGGGCGCCACAACCGCAGACCAAGACACCCCAGCAAGTTG
CAGAGGAGGCCATCAAGAAGGTGCAAGCCCAACTGGAGTCTGTGGCAGCG
GAAGGGGGGGGAGGCGGGACCGAGGGGACAGGTTACCTTCATGGATCTCT
AATCGGGAAG GTATGGTTAAATCTGAAAATGGGGTAGATTATTAGTACAT
TGTCGAGAACAAAGGGCACTGGATAGAGGTGTTTTCTCTCTGCAACTGTT
TTGTCGATTAGGGCTGTCTGAACATATAGCCCTCATCATATACGAAGGGT
ATGGAATCTCTCTTCTCTACATTTTTTACATTCGAACTTCGTGGTTGTGA
GACAGTAAAATGGAAACGTCTTGTTGCGAGTAGAGCATGAGGGATATGGT
GCGCGTTGATGGCATCATAGTTACTGGAATCATAACTTCAAATTTATCAA
CCCGGAGCCATGTCTTTTCTTTTCTTCATGATCGCGAAGTGGAGTGGAGC
TAATTCGTGAGGGTGTTTGGATGAATGCCCACCATGGAAGGCAGACAAAA
GTTTGTAGGATAGGAATGTTGGGCCTGTGCCTCGACTCCATTTCGCTCTT
ATTTTGCTTGTGGAAGTTATGTCTTTGGCTGGTCAGGTCACTCACGCATA
AGCACACACAAATGACCATCCCCCCCCTAACTCACGCATGAACATGTTGT
GTCAATTGCAGCGAGAAAAGGAAAGGATTCTCAAGGCGGCGGAAAAGAAT
GAGCAGTACGTTCAAAG GTAATCATTTTTAATTTAAATGAATTTGAAATG
TTCCAATTTGCTGCCTTGATGGAAAAGCTCACTCCTTGAAGTTAGGGAAA
GGGATGAGTGAATAGCACGTTGGGGTCATTTGGCATGTATGTTATCTTAC
AGTCAGAAGGGAGTGTTTGTGACTGCTGTGGTTATTATGGTGAGGAGGGA
GTTGGGTTTGGGGGTGGGCAGGGATAAAGCTGTTTCTGGGTGCTTGTGAA
GTTCGAGGGGTTTCTATAAAGTGTTTGGCGTAGGCGGGGTGGCTGATTGG
CAGGCCCCAATGACTGAACATTTGCGTGACAACAGCTGATAGTATTTTTT
TAATGCAATTGCCAGGATAGCCTCTTCCAAACACTTGAGTTTTCACTTGG
CTGTAACACAAAAGTTGTCCTAATATTTTAAAGGTCCTCGACTAATTCTC
CACCCAATTTTTGCAGTGCATGATAAGTGTATCCTGTGAGTTTGCTACAA
GCTTTACAAGTGTGCATAAGGGGCTATATGTATTTTTTTTTTGTTAAATA
TGTGTGTGTGTGTGTGTGTGTTGAGGATTTTCATTGGAGAGAACGTTCAT
AGGAAGTGTGATTTTAGGGTTAGGGTTAGGACACATAATCAACCCTGTGC
ATGGATAGGACAATACTTTTGCACTAGATACATCCCTCTCAGAATCCTGT
GGAACATTATTATTATTATTATTATTATTATTATTTATTCCCGCTGTACA
TGTAGAATGCCGTATGTTGATTCGAAAAAAAAGAAGGGTGTTTTGTGCTG
AGTTTTTTTTTGTTAACATAGTTCTACTATACCTTGAGGTTCCCATCGTT
GGGTATGGCACATTTCAACCACATGAGCACTTGTTTTAACTCAGGAAGGA
TGAGATCGCAAGACGAAAACGCCTTGGTATTCCACTGGATGGGCTAGTGG
AACCGGGGGCAGCTGGTAAAGGAGGGGGGGGGGGCAACAGTGGT back to top Coding sequence (CDS) from alignment at C-tenellus_contig10362:3..2446-
>mRNA_C-tenellus_contig10362.1.1 ID=mRNA_C-tenellus_contig10362.1.1|Name=mRNA_C-tenellus_contig10362.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=900bp|location=Sequence derived from alignment at C-tenellus_contig10362:3..2446- (Choristocarpus tenellus KU2346) back to top