mRNA_C-tenellus_contig10340.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10340.4.1
Unique NamemRNA_C-tenellus_contig10340.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10340.4.1 vs. uniprot
Match: D8LLT9_ECTSI (Plus3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT9_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.050e-10
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 2 
Query:  311 LDAKESKKKESYNMGAQRMRKINERNRVHNVTTDTVKGREKRQEDSRRRQEKANGGSVEEFDPFQRRACRPKILWSV 541
            LD +E++KK+S + GA  MR +NERN+  NV TDT  GR+KR  +++ R+  A  G   +FDPF+RR+CRPKILWSV
Sbjct:  429 LDEREAQKKKSLDSGAAGMRALNERNKTFNVHTDTHVGRKKRLAEAKAREASA-AGDEGDFDPFKRRSCRPKILWSV 504
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10340.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLT9_ECTSI1.050e-1053.25Plus3 domain-containing protein (Fragment) n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10340contigC-tenellus_contig10340:3782..5506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLT9
Preferred nameRTF1
PFAMsPlus-3
Model size1725
Max annot lvl2759|Eukaryota
KEGG koko:K13100,ko:K15178
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000428,GO:0000785,GO:0000988,GO:0000989,GO:0000993,GO:0001015,GO:0001076,GO:0001098,GO:0001099,GO:0001701,GO:0001704,GO:0001706,GO:0001711,GO:0001824,GO:0001832,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006289,GO:0006325,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006366,GO:0006368,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007369,GO:0007492,GO:0008023,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008593,GO:0008757,GO:0009058,GO:0009059,GO:0009302,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0016043,GO:0016070,GO:0016071,GO:0016074,GO:0016278,GO:0016279,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016591,GO:0016593,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030880,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031123,GO:0031124,GO:0031126,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031399,GO:0031401,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0033554,GO:0034243,GO:0034402,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034968,GO:0035327,GO:0035987,GO:0036211,GO:0040007,GO:0042054,GO:0042325,GO:0042327,GO:0042800,GO:0043009,GO:0043144,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043628,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045165,GO:0045309,GO:0045747,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045943,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048598,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050815,GO:0050896,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051716,GO:0055029,GO:0060255,GO:0060795,GO:0060968,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0070911,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0080182,GO:0090262,GO:0090304,GO:0097159,GO:0097659,GO:0098727,GO:0098781,GO:0099122,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901407,GO:1901409,GO:1901564,GO:1901576,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903320,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1990234,GO:1990269,GO:2000112,GO:2000113,GO:2000819,GO:2001020,GO:2001141,GO:2001160,GO:2001163,GO:2001165,GO:2001166,GO:2001173,GO:2001207,GO:2001209,GO:2001252
Exons1
Evalue3.63e-13
EggNOG OGsCOG5296@1|root,KOG2402@2759|Eukaryota
DescriptionRNA polymerase-associated protein RTF1
Cds size621
COG categoryK
BRITEko00000,ko03021,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.760716-UTR-C-tenellus_contig10340:3781..46051680789126.760716-UTR-C-tenellus_contig10340:3781..4605Choristocarpus tenellus KU2346UTRC-tenellus_contig10340 3782..4605 -
1680789126.7857454-UTR-C-tenellus_contig10340:5226..55061680789126.7857454-UTR-C-tenellus_contig10340:5226..5506Choristocarpus tenellus KU2346UTRC-tenellus_contig10340 5227..5506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.7752223-CDS-C-tenellus_contig10340:4605..52261680789126.7752223-CDS-C-tenellus_contig10340:4605..5226Choristocarpus tenellus KU2346CDSC-tenellus_contig10340 4606..5226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10340.4.1prot_C-tenellus_contig10340.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10340 4606..5226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10340.4.1

>prot_C-tenellus_contig10340.4.1 ID=prot_C-tenellus_contig10340.4.1|Name=mRNA_C-tenellus_contig10340.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=207bp
MKPRPPPTQQLDAKESKKKESYNMGAQRMRKINERNRVHNVTTDTVKGRE
KRQEDSRRRQEKANGGSVEEFDPFQRRACRPKILWSVQSNKAPASSGVPG
DSPEGEGGGDEAGESKSEASEELAKDGSGAREVADASMQAPHAVLQKAHS
FEGRDVLEAGRAAAMSLKAKGQRMAAPASSEPRRSGLSIANYLSKARKSL
GADPEL*
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mRNA from alignment at C-tenellus_contig10340:3782..5506-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10340.4.1 ID=mRNA_C-tenellus_contig10340.4.1|Name=mRNA_C-tenellus_contig10340.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1725bp|location=Sequence derived from alignment at C-tenellus_contig10340:3782..5506- (Choristocarpus tenellus KU2346)
ACATTATCCATCTGACACATGCAACCAAATCACCCAAAAATCGTGACATG
GAAAAAATTGGCCCCAAATGAACAGCCGCCACCCGCCCCCCCCCCCCCCC
CCAGATACTTTTGACCTATTTCTGCCCTTTTATTAGGAACAGCCCTTTGG
GAATTGCCGATTGCAATAGTTATTTTTCTAGCTCCCCCTCCGAAAAGGAA
ATACCATCATCTTCCGGATATATTATTATTATATTATTATTATATTATTA
TTATTTCGGAACGTGCTTGTCCGCCCTGCCATGAAACCTCGACCCCCTCC
CACCCAACAGTTGGATGCGAAGGAATCCAAGAAGAAGGAGAGCTACAACA
TGGGAGCCCAGCGGATGCGCAAGATCAACGAGCGCAACCGGGTACACAAT
GTGACAACGGACACTGTCAAGGGTAGGGAGAAACGGCAAGAAGACAGCCG
GCGTCGGCAGGAGAAGGCCAATGGGGGGTCAGTGGAGGAGTTTGACCCCT
TTCAGCGGAGAGCGTGCCGGCCGAAGATCTTGTGGTCTGTTCAGAGTAAT
AAAGCTCCGGCATCATCGGGTGTGCCTGGAGACAGTCCTGAGGGTGAGGG
CGGCGGGGATGAGGCAGGGGAGAGCAAGTCGGAGGCATCGGAGGAGTTGG
CGAAGGATGGGTCGGGGGCGCGAGAGGTTGCGGATGCCTCGATGCAGGCT
CCGCATGCTGTGTTGCAGAAGGCTCATAGTTTTGAGGGGAGGGATGTGCT
CGAGGCTGGCAGGGCTGCAGCCATGAGCCTCAAGGCCAAGGGACAGAGGA
TGGCAGCTCCTGCCTCTAGTGAGCCTAGGCGATCGGGTCTTAGCATTGCT
AATTATTTGTCTAAGGCCCGGAAAAGTCTTGGTGCTGACCCAGAACTATA
GTATAGATTTAACACTGATCCGAAAGGGGTACTATTATATAGTACTGATC
GGGGCACTAGGAAGCTGTTGGGAGGGAGACGGACTTGAAGAGAGAAGTGG
GTAGGAGGTGGTGGGGGCGATGGTTTCCCCTTTTTGGGTGAGTTGAGAGA
TTTTTGTTCATTCTTGTACGTTGTACTCGTGTCCCCTACTACGGCTTGTG
AAGAGTCCAATTAGGGAGGAAGGTTTTTGCCCTAGAGGATGGGTACGACA
TTCGCTGTGGTGAACTACACAGTGAAGACCAATACCTCATATATTGCTAA
TCACGATAATACAGGTGTGTGAGTGCATGTAATGCAGAGAGATTAATTAC
ATCACTCCCTTGCGTACCCCAAGAAAGGAAGCCCCCCTCTAGCACTGGTT
ATTGTGCCGATGACCTTTTGTCCCAGCACTAGGTAATAGGAAATACATAA
ATGTTGGACCTGGACTGGACTTGGAGGTTCGCCCGAAAGTAATGCATCCT
GTAGAATTGTTGACTTTGAAGTAAATTTGCCTTGTGCTCTCACTTTCTCA
CCAGTGGAGTCCATTGGCGTACCTTGGATCCTACCTACTCCCATATGATG
ACTGTTAGACCGAAGTCTTTCGTACCAGTGGGAAGTTCGTCCGTACTCCA
AAAAAGAACATAAAAGTTCAGGTGAGAGGGTTCTGAGCACTGGATGAATC
TGGTCTCTCATTGATCAGTTGTCCTTGTGAAGGAGGGTTCCAGATCCATT
GCAGCACTTGAAGGGATTTTCAACATGCCCTCAAGCCATCAGACTGGGAG
TGATGCTCTCCCATACTATACTGCC
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Coding sequence (CDS) from alignment at C-tenellus_contig10340:3782..5506-

>mRNA_C-tenellus_contig10340.4.1 ID=mRNA_C-tenellus_contig10340.4.1|Name=mRNA_C-tenellus_contig10340.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=621bp|location=Sequence derived from alignment at C-tenellus_contig10340:3782..5506- (Choristocarpus tenellus KU2346)
ATGAAACCTCGACCCCCTCCCACCCAACAGTTGGATGCGAAGGAATCCAA
GAAGAAGGAGAGCTACAACATGGGAGCCCAGCGGATGCGCAAGATCAACG
AGCGCAACCGGGTACACAATGTGACAACGGACACTGTCAAGGGTAGGGAG
AAACGGCAAGAAGACAGCCGGCGTCGGCAGGAGAAGGCCAATGGGGGGTC
AGTGGAGGAGTTTGACCCCTTTCAGCGGAGAGCGTGCCGGCCGAAGATCT
TGTGGTCTGTTCAGAGTAATAAAGCTCCGGCATCATCGGGTGTGCCTGGA
GACAGTCCTGAGGGTGAGGGCGGCGGGGATGAGGCAGGGGAGAGCAAGTC
GGAGGCATCGGAGGAGTTGGCGAAGGATGGGTCGGGGGCGCGAGAGGTTG
CGGATGCCTCGATGCAGGCTCCGCATGCTGTGTTGCAGAAGGCTCATAGT
TTTGAGGGGAGGGATGTGCTCGAGGCTGGCAGGGCTGCAGCCATGAGCCT
CAAGGCCAAGGGACAGAGGATGGCAGCTCCTGCCTCTAGTGAGCCTAGGC
GATCGGGTCTTAGCATTGCTAATTATTTGTCTAAGGCCCGGAAAAGTCTT
GGTGCTGACCCAGAACTATAG
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