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Homology
BLAST of mRNA_C-tenellus_contig10340.4.1 vs. uniprot
Match: D8LLT9_ECTSI (Plus3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT9_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 1.050e-10 Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 2 Query: 311 LDAKESKKKESYNMGAQRMRKINERNRVHNVTTDTVKGREKRQEDSRRRQEKANGGSVEEFDPFQRRACRPKILWSV 541
LD +E++KK+S + GA MR +NERN+ NV TDT GR+KR +++ R+ A G +FDPF+RR+CRPKILWSV
Sbjct: 429 LDEREAQKKKSLDSGAAGMRALNERNKTFNVHTDTHVGRKKRLAEAKAREASA-AGDEGDFDPFKRRSCRPKILWSV 504
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10340.4.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D8LLT9_ECTSI | 1.050e-10 | 53.25 | Plus3 domain-containing protein (Fragment) n=1 Tax... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 2880.D8LLT9 |
| Preferred name | RTF1 |
| PFAMs | Plus-3 |
| Model size | 1725 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K13100,ko:K15178 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000122,GO:0000428,GO:0000785,GO:0000988,GO:0000989,GO:0000993,GO:0001015,GO:0001076,GO:0001098,GO:0001099,GO:0001701,GO:0001704,GO:0001706,GO:0001711,GO:0001824,GO:0001832,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006289,GO:0006325,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006366,GO:0006368,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007369,GO:0007492,GO:0008023,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008593,GO:0008757,GO:0009058,GO:0009059,GO:0009302,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0016043,GO:0016070,GO:0016071,GO:0016074,GO:0016278,GO:0016279,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016591,GO:0016593,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030880,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031123,GO:0031124,GO:0031126,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031399,GO:0031401,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0033554,GO:0034243,GO:0034402,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034968,GO:0035327,GO:0035987,GO:0036211,GO:0040007,GO:0042054,GO:0042325,GO:0042327,GO:0042800,GO:0043009,GO:0043144,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043628,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045165,GO:0045309,GO:0045747,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045943,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048598,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050815,GO:0050896,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051716,GO:0055029,GO:0060255,GO:0060795,GO:0060968,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0070911,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0080182,GO:0090262,GO:0090304,GO:0097159,GO:0097659,GO:0098727,GO:0098781,GO:0099122,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901407,GO:1901409,GO:1901564,GO:1901576,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903320,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1990234,GO:1990269,GO:2000112,GO:2000113,GO:2000819,GO:2001020,GO:2001141,GO:2001160,GO:2001163,GO:2001165,GO:2001166,GO:2001173,GO:2001207,GO:2001209,GO:2001252 |
| Exons | 1 |
| Evalue | 3.63e-13 |
| EggNOG OGs | COG5296@1|root,KOG2402@2759|Eukaryota |
| Description | RNA polymerase-associated protein RTF1 |
| Cds size | 621 |
| COG category | K |
| BRITE | ko00000,ko03021,ko03041 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789126.760716-UTR-C-tenellus_contig10340:3781..4605 | 1680789126.760716-UTR-C-tenellus_contig10340:3781..4605 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig10340 3782..4605 - |
| 1680789126.7857454-UTR-C-tenellus_contig10340:5226..5506 | 1680789126.7857454-UTR-C-tenellus_contig10340:5226..5506 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig10340 5227..5506 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789126.7752223-CDS-C-tenellus_contig10340:4605..5226 | 1680789126.7752223-CDS-C-tenellus_contig10340:4605..5226 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig10340 4606..5226 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10340.4.1 >prot_C-tenellus_contig10340.4.1 ID=prot_C-tenellus_contig10340.4.1|Name=mRNA_C-tenellus_contig10340.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=207bp
MKPRPPPTQQLDAKESKKKESYNMGAQRMRKINERNRVHNVTTDTVKGRE
KRQEDSRRRQEKANGGSVEEFDPFQRRACRPKILWSVQSNKAPASSGVPG
DSPEGEGGGDEAGESKSEASEELAKDGSGAREVADASMQAPHAVLQKAHS
FEGRDVLEAGRAAAMSLKAKGQRMAAPASSEPRRSGLSIANYLSKARKSL
GADPEL* back to topmRNA from alignment at C-tenellus_contig10340:3782..5506- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-tenellus_contig10340.4.1 ID=mRNA_C-tenellus_contig10340.4.1|Name=mRNA_C-tenellus_contig10340.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1725bp|location=Sequence derived from alignment at C-tenellus_contig10340:3782..5506- (Choristocarpus tenellus KU2346)
ACATTATCCATCTGACACATGCAACCAAATCACCCAAAAATCGTGACATG
GAAAAAATTGGCCCCAAATGAACAGCCGCCACCCGCCCCCCCCCCCCCCC
CCAGATACTTTTGACCTATTTCTGCCCTTTTATTAGGAACAGCCCTTTGG
GAATTGCCGATTGCAATAGTTATTTTTCTAGCTCCCCCTCCGAAAAGGAA
ATACCATCATCTTCCGGATATATTATTATTATATTATTATTATATTATTA
TTATTTCGGAACGTGCTTGTCCGCCCTGCCATGAAACCTCGACCCCCTCC
CACCCAACAGTTGGATGCGAAGGAATCCAAGAAGAAGGAGAGCTACAACA
TGGGAGCCCAGCGGATGCGCAAGATCAACGAGCGCAACCGGGTACACAAT
GTGACAACGGACACTGTCAAGGGTAGGGAGAAACGGCAAGAAGACAGCCG
GCGTCGGCAGGAGAAGGCCAATGGGGGGTCAGTGGAGGAGTTTGACCCCT
TTCAGCGGAGAGCGTGCCGGCCGAAGATCTTGTGGTCTGTTCAGAGTAAT
AAAGCTCCGGCATCATCGGGTGTGCCTGGAGACAGTCCTGAGGGTGAGGG
CGGCGGGGATGAGGCAGGGGAGAGCAAGTCGGAGGCATCGGAGGAGTTGG
CGAAGGATGGGTCGGGGGCGCGAGAGGTTGCGGATGCCTCGATGCAGGCT
CCGCATGCTGTGTTGCAGAAGGCTCATAGTTTTGAGGGGAGGGATGTGCT
CGAGGCTGGCAGGGCTGCAGCCATGAGCCTCAAGGCCAAGGGACAGAGGA
TGGCAGCTCCTGCCTCTAGTGAGCCTAGGCGATCGGGTCTTAGCATTGCT
AATTATTTGTCTAAGGCCCGGAAAAGTCTTGGTGCTGACCCAGAACTATA
GTATAGATTTAACACTGATCCGAAAGGGGTACTATTATATAGTACTGATC
GGGGCACTAGGAAGCTGTTGGGAGGGAGACGGACTTGAAGAGAGAAGTGG
GTAGGAGGTGGTGGGGGCGATGGTTTCCCCTTTTTGGGTGAGTTGAGAGA
TTTTTGTTCATTCTTGTACGTTGTACTCGTGTCCCCTACTACGGCTTGTG
AAGAGTCCAATTAGGGAGGAAGGTTTTTGCCCTAGAGGATGGGTACGACA
TTCGCTGTGGTGAACTACACAGTGAAGACCAATACCTCATATATTGCTAA
TCACGATAATACAGGTGTGTGAGTGCATGTAATGCAGAGAGATTAATTAC
ATCACTCCCTTGCGTACCCCAAGAAAGGAAGCCCCCCTCTAGCACTGGTT
ATTGTGCCGATGACCTTTTGTCCCAGCACTAGGTAATAGGAAATACATAA
ATGTTGGACCTGGACTGGACTTGGAGGTTCGCCCGAAAGTAATGCATCCT
GTAGAATTGTTGACTTTGAAGTAAATTTGCCTTGTGCTCTCACTTTCTCA
CCAGTGGAGTCCATTGGCGTACCTTGGATCCTACCTACTCCCATATGATG
ACTGTTAGACCGAAGTCTTTCGTACCAGTGGGAAGTTCGTCCGTACTCCA
AAAAAGAACATAAAAGTTCAGGTGAGAGGGTTCTGAGCACTGGATGAATC
TGGTCTCTCATTGATCAGTTGTCCTTGTGAAGGAGGGTTCCAGATCCATT
GCAGCACTTGAAGGGATTTTCAACATGCCCTCAAGCCATCAGACTGGGAG
TGATGCTCTCCCATACTATACTGCC back to topCoding sequence (CDS) from alignment at C-tenellus_contig10340:3782..5506- >mRNA_C-tenellus_contig10340.4.1 ID=mRNA_C-tenellus_contig10340.4.1|Name=mRNA_C-tenellus_contig10340.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=621bp|location=Sequence derived from alignment at C-tenellus_contig10340:3782..5506- (Choristocarpus tenellus KU2346)
ATGAAACCTCGACCCCCTCCCACCCAACAGTTGGATGCGAAGGAATCCAA
GAAGAAGGAGAGCTACAACATGGGAGCCCAGCGGATGCGCAAGATCAACG
AGCGCAACCGGGTACACAATGTGACAACGGACACTGTCAAGGGTAGGGAG
AAACGGCAAGAAGACAGCCGGCGTCGGCAGGAGAAGGCCAATGGGGGGTC
AGTGGAGGAGTTTGACCCCTTTCAGCGGAGAGCGTGCCGGCCGAAGATCT
TGTGGTCTGTTCAGAGTAATAAAGCTCCGGCATCATCGGGTGTGCCTGGA
GACAGTCCTGAGGGTGAGGGCGGCGGGGATGAGGCAGGGGAGAGCAAGTC
GGAGGCATCGGAGGAGTTGGCGAAGGATGGGTCGGGGGCGCGAGAGGTTG
CGGATGCCTCGATGCAGGCTCCGCATGCTGTGTTGCAGAAGGCTCATAGT
TTTGAGGGGAGGGATGTGCTCGAGGCTGGCAGGGCTGCAGCCATGAGCCT
CAAGGCCAAGGGACAGAGGATGGCAGCTCCTGCCTCTAGTGAGCCTAGGC
GATCGGGTCTTAGCATTGCTAATTATTTGTCTAAGGCCCGGAAAAGTCTT
GGTGCTGACCCAGAACTATAG back to top
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