mRNA_C-tenellus_contig10203.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10203.1.1
Unique NamemRNA_C-tenellus_contig10203.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10203.1.1 vs. uniprot
Match: D7FTR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTR0_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 4.820e-41
Identity = 157/481 (32.64%), Postives = 213/481 (44.28%), Query Frame = 1 
Query: 2341 LLPGVVQAITGSQRGQPLQAVGEVAATFNRMVERGARLVTREQFVDAITAGYVGLPESELAVLFNFFVRP--------------SRNTAPPRVEGCGVGMDSSTFRT-----------GRRGVRKEGGL--ADWVEAVACLRVLAQSREPVKSILRGVFDIFAGAQLQEKQEGSV------------------------------HGVARGDEGRSFNNFVESPNTTTLVNAVATTSPPVLAG-----------------QRSVPLRDTVGMFSLACSNEDERHIVETVFRHRFCLELEAIQRRKQGRSTIEKIGN------------------------HRPCELATGTADGRVGEASIDASGSPLLLEGPYSPSPRTSVHPSGVRSQPSSPVHVGGMERDGNFSAVLVASTAESE--ATSLRNMGALQSGRGGWVSSGEFMEALARCPEMEEVFGKLLTARLQHQHRPTWMAPILHGGG 3483
            LL  V++ ITGSQ G PLQAV EVAATF   V   ++L T+ QFVD IT  + G PESEL  LF FF RP              +R+  P   +  GVG ++S  RT           G RG +++ G   ADW  AVACLR+LA+ +EPVK+ + GVFD+FA A+    +                                   G+A      S    +  P +    +A A +S   + G                 +  V   +T  MF+L CSN+ ERH V T +RHRF LEL A+   ++GR+ +    N                        HRP   ++   DG+     +DA          YS +    V P+G R   + P      ER G   A L          A+ + + G  ++G    V++ EF EALARCPEM + FG  L ARL+H+HRP WMAP +  GG
Sbjct:  192 LLKQVLKVITGSQHGLPLQAVKEVAATFGTAVGT-SKLATKAQFVDNITGKHEGFPESELNTLFGFFRRPMAPGPATATTFSEENRDKFPQSQQRGGVGTNNSRPRTSPGNFGRAGKSGSRGGKEKDGAQGADWTMAVACLRLLAKPKEPVKAAVLGVFDVFARARGDRMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGIAP-----SMQQGLAGPESH---SAFALSSADGIGGXXXXXXXXDGRGNSSLERNRVCFAETARMFTLVCSNDQERHAVTTTYRHRFYLELRAVM--QEGRNPLRFRNNQNNSGDGGYNSPNMVESDRCLSPPHRPRNRSS--KDGKASSLQLDA----------YSSTETPHVLPTGGRPTTAEPAK----ERPG---ARLQKGDGHGRGGASGMGSPGPEENG----VTAEEFSEALARCPEMLQAFGSQLDARLRHRHRPIWMAPFMRKGG 638
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BLAST of mRNA_C-tenellus_contig10203.1.1 vs. uniprot
Match: A0A6H5J8S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S1_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.910e-18
Identity = 120/417 (28.78%), Postives = 164/417 (39.33%), Query Frame = 1 
Query: 2341 LLPGVVQAITGSQRGQPLQAVGEVAATFNRMVERGARLVTREQFVDAITAGY-VGLPESELAVLFNFFV---RPSRNTAP-PRVEGCGVGMDSSTFRTGRRGVRKEGGLADWVEAVACL--------RVLAQSREPVKSILRGVFDIFAGAQLQEKQEGSVHGVARGDEG-RSFNNFVESPNTTTLVNAVATTSPPVLAGQRS-----VPLRDTVGMFSLACSNEDERHIVETVFRHRFCLELEAIQRRKQGRSTIEKIGNHRPCELATGTADGRVGEASIDASGSPLLLEGPYSPSPRTSVHPSGVRSQPSS-----PVHVGGMERDGNFSAVLVASTAESEATSLRNMGALQSGRGG------------WVSSGEFMEALARCPEMEEVFGKLLTARLQHQHRPTWMAPILHGGG 3483
            LL  V++ ITGSQ G PLQAV EVAA F  +V   ++L T+ Q   A+T    V LP           +   RP R +    ++ G    + ++T    R  +  E    +   A A +                                     ++G    + +G  G  S + F  S                   G  S     V   +T  MF+L CSN+ ERH V T +RHRFCLEL A+   ++GR  +    N            G  G  S +   S   L  P+ PS R+S        QP +       HV  +   G  +    A     E   +R     + GRGG             +++ EF EALARCPEM E FG  L ARL+H+HRP WMAP +  GG
Sbjct:  177 LLKQVLKVITGSQHGLPLQAVKEVAAAFGTVVGT-SKLATKAQVWKAVTKDISVSLPVRGQRYPVQLSMKRPRPERESVLFHKLLGIAPPVPTATGSASRSAMASESPRREQTNAAANIPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGIAPSIQQGLAGPESHSAFALSSADGIGGXXXXXXXXXXXRGNSSLEWNRVCFAETARMFTLVCSNDQERHAVTTTYRHRFCLELRAVM--QEGRDPLRFRNNQ--------NNGGDGGYDSPNMIESDRFLSPPHRPSNRSSEDGKASSLQPDAYSSTETPHV--LPTGGRPTTAKPAK----ERPGIRLQKGERHGRGGDSGMGSPGPEENGITAEEFSEALARCPEMLEAFGSQLDARLRHRHRPIWMAPFMRQGG 576
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10203.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTR0_ECTSI4.820e-4132.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8S1_9PHAE1.910e-1828.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10203contigC-tenellus_contig10203:269..4916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3826
Hectar predicted targeting categoryother localisation
Exons3
Cds size1083
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789120.3686244-UTR-C-tenellus_contig10203:268..26981680789120.3686244-UTR-C-tenellus_contig10203:268..2698Choristocarpus tenellus KU2346UTRC-tenellus_contig10203 269..2698 +
1680789120.4139318-UTR-C-tenellus_contig10203:4603..49161680789120.4139318-UTR-C-tenellus_contig10203:4603..4916Choristocarpus tenellus KU2346UTRC-tenellus_contig10203 4604..4916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789120.3839245-CDS-C-tenellus_contig10203:2698..27371680789120.3839245-CDS-C-tenellus_contig10203:2698..2737Choristocarpus tenellus KU2346CDSC-tenellus_contig10203 2699..2737 +
1680789120.3953497-CDS-C-tenellus_contig10203:3170..35331680789120.3953497-CDS-C-tenellus_contig10203:3170..3533Choristocarpus tenellus KU2346CDSC-tenellus_contig10203 3171..3533 +
1680789120.4048522-CDS-C-tenellus_contig10203:3922..46031680789120.4048522-CDS-C-tenellus_contig10203:3922..4603Choristocarpus tenellus KU2346CDSC-tenellus_contig10203 3923..4603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10203.1.1prot_C-tenellus_contig10203.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10203 2699..4603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10203.1.1

>prot_C-tenellus_contig10203.1.1 ID=prot_C-tenellus_contig10203.1.1|Name=mRNA_C-tenellus_contig10203.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=361bp
MVERGARLVTREQFVDAITAGYVGLPESELAVLFNFFVRPSRNTAPPRVE
GCGVGMDSSTFRTGRRGVRKEGGLADWVEAVACLRVLAQSREPVKSILRG
VFDIFAGAQLQEKQEGSVHGVARGDEGRSFNNFVESPNTTTLVNAVATTS
PPVLAGQRSVPLRDTVGMFSLACSNEDERHIVETVFRHRFCLELEAIQRR
KQGRSTIEKIGNHRPCELATGTADGRVGEASIDASGSPLLLEGPYSPSPR
TSVHPSGVRSQPSSPVHVGGMERDGNFSAVLVASTAESEATSLRNMGALQ
SGRGGWVSSGEFMEALARCPEMEEVFGKLLTARLQHQHRPTWMAPILHGG
GVLPMQKEWL*
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mRNA from alignment at C-tenellus_contig10203:269..4916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10203.1.1 ID=mRNA_C-tenellus_contig10203.1.1|Name=mRNA_C-tenellus_contig10203.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4648bp|location=Sequence derived from alignment at C-tenellus_contig10203:269..4916+ (Choristocarpus tenellus KU2346)
CCAGATCCAGCCAAAAGCTGTCAGGTGCCAGGGATAGAGTTGGTGGCAAC
TTTGAACCGACCAGGAGGCCTAATACCTCTGGTGGTAAGCACCACGTTCG
GGTGGGCAGGCCAGCAGACCGAGACATGGGCTTTACCAAGGGGGGCTTCA
CGTACTTCGTGGTGGGGTATTGAGTGGGTGCTTTAAATGCTTAAAAAACA
TGCATTTCAATCGATTCCAGTACTAGTCTGAACACTATCCAAAGCCATAA
AGCATGCTACTATAGTGTTACTTGATTGGAAGTCTACTTGTTTACTACTA
CCTGCGGTTTGATACTCTGAATTGCAGCTCATCCTTATTGTTTTTTTTGC
GCAGTGTGTTCCATGTCATGCAGTGCCGGGGCAATATTTGAATGCTCCCC
AGGAGTAACTGGAGTATATTGCTTCGATAATCAAACTTTGTGACTTTCCT
CCCTTTCTCCAACCCCTTGTGGCAGAAAACCGCTGCTTTCTGTAATCTTC
TTATCTCGGCCCTACCCTCCTCTCCATTTTTTTCCACTACTCGAATATGC
CAAAATCTACCTCCCTCACCCCCCCGCCATCATGTCCACAAAAACATGAT
ACTCAATAACACAAAAACAGAGTCCCCAGGAGACCCGCAGAGATAAGGTA
GGGGAGTCACTGGCAGTTCACCTGGCGCGAGAAACTGAGGAGCATGGTCT
GAAGTGGAACCTTTTGAAGCAGGTTCTCAAGGCAAGACTACAATTAGCCA
TAGGGCTGGAGAGGAACCAAGCGGGGGTATTAAGAGAAGTGTGAAGGTTG
CTACAGAGACGTTGGCGCTCTGTAATGTACTCTCTGTTTCGTGGTGAGCC
TAAGGTATTTTCATCCGTTACCCGTAACTTCTCAATGTCAAGATAAAAGA
CGCGATTAACGTAGAAAATTATTCCTTTTATTTTTATTGACCCAAAGTTA
ATTGAGAGGTAGGTAGGCCGGTTTGGGTCGCTATTGCATTGCAAGCTATC
TTTCTTACCCTGCGCAATACACCCTATTTCAATTGCTTCATGTGCACAGT
AGTGTACGCAAAATTGATGTTCCTCCTTTTTCCGCCCAAGGTGACACAGA
GTCAGAGTATCTTTGAGGGTAAAGCTGCGTCCATTTGGGGGCCAAAATCC
AATGTTGCAATTTTGATGTAATTTTGGCTATCATGTTTCTTAGGGGATGT
CAACATCCTTGTTCCGGACACACCCTTTCATAATGTATACGCTTTGCCTA
CTCTGAAACTTTTGGAGTAGGTAAAATGTCATTAAAAACCTGTGGGAAGC
CAAGCCCCAAATGAACAAACCGGGAAAAACTCGTACCCTCTAAGATACTT
TCACTCCACCACAATTCAGCAAAGGCTCTACCTGCAATTGTGCAAAATGA
ACGGCATCTTTTTTACCATTTCTTAGGATCCTTAGAATGTAACCTTGTGT
ACCTCTCAACTACTTTGGCTCATTAGGGAGTACAAGATTGAGGGGATGAG
AGGGACACTCCTAAGCAAATGCATCCTAATGGGCTCAAAGTATCTGGGGG
TGGGTGGGTGGCGGCTGTCCATTTTGGGGCCAATTTTTTCCATGTCGCGA
TTTTTTGGGTGATTTGGTTGCATACGTTAGATAGATAATGTAAGTGCACC
TTTCATGGTTATGGGCCAAATGGACACCCTTGTGTAGACCCCTCCCTCCC
CTCCCCAGATACTTTGGGTCATTGGTTCAATTTGACATAGATAACTCTAG
AATCTTAGTACTCTATTGGCATGAAGACATTTCACTGTGTACCAAGTATC
CCTCATGGACCTCAGTCTTGGCATGTGCTGTGATACAGGGCTTGAACATC
CTGTCTGTTCTTGTTTATATTCAAACTATTACGCCTTTAACATATGCCCT
ATGTAAGAGTTGTTTGATTGTTGAGTGCAATACAAACAAGTAGCAGCATT
AATAGTGTCTGAGTCCTTTGGGTTCAGCAAGAGTCAACCCAACAGATGTA
TAAGCCATTGCCCATAGACGGGAAAAACAATGCCCACATTCTCACTGCAA
GAAAATATTACCACAAGAATATGAAACAATTTGGAGCTGAACAGTTCTAA
GTTATTGACAATTGGAAAACACCACTAAAGGCTCTGTGATTAATTTTTGC
AAGGGGCAAGGTATGGTACACATATCGCCATTGTGTGTTGTTTGTGGTGA
AGTTCACCATCACGGCAGCAATTAGTCCATGCCATCTATAGGCGAATAGT
AAACATCCTGCAGAATCGGCCGGAAATCCATCCAAACCAAGTAAGAAGAA
TAAATGTGCCTACTAGCACTGCTGCTCTCCCAATACCACCTTGTTGCCTG
GGGTGGTTCAGGCAATTACTGGCTCTCAGAGGGGGCAGCCACTGCAGGCA
GTAGGCGAAGTGGCTGCCACCTTCAACAGAATGGTGGAAAGGGGTGCACG
GCTAGTCACCAGAGAGCAGGTCTGTTGGAGAGGGGGGCACGATTGGGAAG
ATACATGTATCTATGTGTGTATGTGGCGGGAAGAGTGGTGGGTGAATCGT
TTTTTGCGTTGGGAAGACAAGGAACAGAAACTCACAAATAGGAAAGAACT
GTCAACTATTGGAGTTAAAGGTGCTCGTAATGGAGGAAGGTTGAGGATGT
AAGAATAATGGCGCGTCACTTTGGTATGAGTGACTCACAACATTGTGGAC
TGATGCTGTTTCCCAAACTGTTCAATACCTTGCTGTACTCTCCCAATTGC
CACTTTCAACATCACCACCATCAGCCCTCTGTCCAATCGCCCTGTTGCTC
AGTCATCTTACATCCCATCGCCTCCACTCAGTCACCTTACATTTCTTGCA
TTTTGCCCCCAATCTTTGTCTCACTTGGTGCCTGCCCTGCTCTATCAATC
AGTTTGTAGATGCTATTACGGCGGGCTATGTAGGTTTGCCTGAGAGTGAG
CTTGCTGTTCTCTTCAACTTTTTCGTTCGACCCTCCAGAAATACCGCACC
ACCTCGCGTTGAAGGTTGTGGGGTAGGCATGGACAGTTCTACATTCCGAA
CAGGGAGACGGGGGGTAAGGAAGGAGGGTGGACTCGCAGATTGGGTGGAG
GCTGTGGCGTGTCTAAGGGTCCTTGCTCAGTCGAGAGAGCCAGTCAAGAG
TATACTCCGCGGAGTGTTCGATATATTCGCAGGAGCACAGCTGCAGGAAA
AGCAGGAAGGGTCGGTTCATGGGGTTGCAAGAGGGGACGAGGGAAGAAGC
TTCAACAACTTTGTGGTGAGATGTTTTCAGTGGAGGAAAGATCTTGGTTG
GCATATGCAGTAGTGCCAAAGTACCCAGTTTTTGGCGTAGGTCTATATAC
TACGAGCTCTTCATAGAGCAGAGGAGTGGACGGAGATAACCTGTACTGTG
TGACAATGATGTACGTTGTGTTGTGCTGGGAGGGATGATGGGAGGGCTTT
GTCAGTGTTATGGCCTCCCATGAGCATTGAATAATTTGTTTCATCAAGCA
ATATTTCCCCTAATGTCAGGAACTTCCAGGTGCACGTTAATCAATAGCAC
AGTTTTCCTGAATCTTATGCTCTCAACGTCCGAGCTTCAGTAACTTGTGC
TCGTCTGAGTCTGACCATCTTCCCCTCCTCAATTTCGGGACCTGCCCTGC
TCAGGAATCCCCCAACACAACAACGCTTGTGAATGCCGTAGCTACTACCA
GCCCCCCGGTTCTTGCTGGTCAGAGGAGTGTGCCCTTGAGGGACACAGTA
GGAATGTTCAGCTTGGCTTGCAGCAATGAGGACGAACGACACATCGTTGA
AACTGTCTTCCGCCATCGCTTCTGCCTAGAATTAGAAGCCATTCAAAGGA
GGAAGCAGGGCCGGAGCACCATTGAGAAAATCGGTAACCACCGGCCATGT
GAGTTGGCCACAGGCACGGCGGACGGGAGAGTTGGAGAGGCAAGTATAGA
TGCATCAGGATCACCGCTCCTGCTGGAGGGTCCTTATTCTCCTTCCCCCA
GAACCAGTGTTCATCCCAGTGGGGTCCGATCGCAGCCAAGCAGTCCAGTA
CATGTCGGGGGAATGGAAAGGGACGGCAATTTCAGTGCTGTGCTGGTTGC
TTCTACTGCAGAGAGTGAGGCAACTTCCTTGAGGAACATGGGAGCCTTGC
AAAGTGGTCGGGGGGGTTGGGTTTCATCAGGAGAGTTTATGGAGGCATTG
GCCAGGTGTCCAGAGATGGAAGAGGTCTTCGGCAAACTACTGACTGCACG
TTTGCAGCACCAACATCGTCCAACTTGGATGGCACCAATACTGCATGGTG
GAGGGGTACTTCCGATGCAAAAGGAGTGGTTGTAACAGTACTTTACGGCT
ACAGAGTGCCCCAGAGCAAGTCCAATGCAGATGTCGGGATGCAACGGATA
GTAGGATAGCAGTGTGGATTACAATGAATGGCAGATACCCATTGTTGCAG
TGCTCTGGTAACTCAACGGGTTGGGCAGATTAATTTATTAGCAGGTCTCC
TAAATACTTCAAACTAGCCAATTGGATCAATGAAGTCAAAGAGTTTATAG
AAAGAAAAATGGTGTACGGGTTATCTAGCACGGTCCAAAAGATAATATCT
AAGAACCCCCAAAATTACCCATAGCACTACCACAAGGTAAGTGGTCCT
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Coding sequence (CDS) from alignment at C-tenellus_contig10203:269..4916+

>mRNA_C-tenellus_contig10203.1.1 ID=mRNA_C-tenellus_contig10203.1.1|Name=mRNA_C-tenellus_contig10203.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1083bp|location=Sequence derived from alignment at C-tenellus_contig10203:269..4916+ (Choristocarpus tenellus KU2346)
ATGGTGGAAAGGGGTGCACGGCTAGTCACCAGAGAGCAGTTTGTAGATGC
TATTACGGCGGGCTATGTAGGTTTGCCTGAGAGTGAGCTTGCTGTTCTCT
TCAACTTTTTCGTTCGACCCTCCAGAAATACCGCACCACCTCGCGTTGAA
GGTTGTGGGGTAGGCATGGACAGTTCTACATTCCGAACAGGGAGACGGGG
GGTAAGGAAGGAGGGTGGACTCGCAGATTGGGTGGAGGCTGTGGCGTGTC
TAAGGGTCCTTGCTCAGTCGAGAGAGCCAGTCAAGAGTATACTCCGCGGA
GTGTTCGATATATTCGCAGGAGCACAGCTGCAGGAAAAGCAGGAAGGGTC
GGTTCATGGGGTTGCAAGAGGGGACGAGGGAAGAAGCTTCAACAACTTTG
TGGAATCCCCCAACACAACAACGCTTGTGAATGCCGTAGCTACTACCAGC
CCCCCGGTTCTTGCTGGTCAGAGGAGTGTGCCCTTGAGGGACACAGTAGG
AATGTTCAGCTTGGCTTGCAGCAATGAGGACGAACGACACATCGTTGAAA
CTGTCTTCCGCCATCGCTTCTGCCTAGAATTAGAAGCCATTCAAAGGAGG
AAGCAGGGCCGGAGCACCATTGAGAAAATCGGTAACCACCGGCCATGTGA
GTTGGCCACAGGCACGGCGGACGGGAGAGTTGGAGAGGCAAGTATAGATG
CATCAGGATCACCGCTCCTGCTGGAGGGTCCTTATTCTCCTTCCCCCAGA
ACCAGTGTTCATCCCAGTGGGGTCCGATCGCAGCCAAGCAGTCCAGTACA
TGTCGGGGGAATGGAAAGGGACGGCAATTTCAGTGCTGTGCTGGTTGCTT
CTACTGCAGAGAGTGAGGCAACTTCCTTGAGGAACATGGGAGCCTTGCAA
AGTGGTCGGGGGGGTTGGGTTTCATCAGGAGAGTTTATGGAGGCATTGGC
CAGGTGTCCAGAGATGGAAGAGGTCTTCGGCAAACTACTGACTGCACGTT
TGCAGCACCAACATCGTCCAACTTGGATGGCACCAATACTGCATGGTGGA
GGGGTACTTCCGATGCAAAAGGAGTGGTTGTAA
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