mRNA_C-tenellus_contig1018.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1018.2.1
Unique NamemRNA_C-tenellus_contig1018.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1018.2.1 vs. uniprot
Match: A0A835YNH4_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH4_9STRA)

HSP 1 Score: 128 bits (321), Expect = 8.710e-33
Identity = 57/72 (79.17%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 EVPECRVCRGEPESGRPLYSPCLCSGSIMYTHEDCLLQWLQHSGKDSCELCSSPFSFTPVYSPDTPAQLPAW 216
            EV ECRVCRGEPE GR LY+PCLCSGSIMY HEDCL QWL HS KDSCELC   F+FTPVY+PD PA LPAW
Sbjct:   45 EVLECRVCRGEPELGRRLYAPCLCSGSIMYIHEDCLQQWLAHSKKDSCELCGHTFAFTPVYAPDAPALLPAW 116
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BLAST of mRNA_C-tenellus_contig1018.2.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 3.640e-31
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 EVPECRVCRGEPESGRPLYSPCLCSGSIMYTHEDCLLQWLQHSGKDSCELCSSPFSFTPVYSPDTPAQLPAW 216
            E PECRVCRGEPE GR LY+PCLCSGSIM+THEDCLL+WLQHSGKD+CELC + F FTPVY P  P  +P +
Sbjct:   63 EPPECRVCRGEPEPGRRLYAPCLCSGSIMHTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDPGAPTCVPLY 134
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BLAST of mRNA_C-tenellus_contig1018.2.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.720e-30
Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 EVPECRVCRGEPESGRPLYSPCLCSGSIMYTHEDCLLQWLQHSGKDSCELCSSPFSFTPVYSPDTPAQLPAW 216
            E PECRVCRGEPE GR LY+PCLCSGSIM+THEDCLL+WLQHSGKD+CELC + F FTPVY    P ++P +
Sbjct:   63 EPPECRVCRGEPEPGRRLYAPCLCSGSIMHTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDAGAPQRVPLY 134
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BLAST of mRNA_C-tenellus_contig1018.2.1 vs. uniprot
Match: S4RAN7_PETMA (RING-CH-type domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RAN7_PETMA)

HSP 1 Score: 103 bits (256), Expect = 4.870e-27
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:   13 CRVCRGEPESGRPLYSPCLCSGSIMYTHEDCLLQWLQHSGKDSCELCSSPFSFTPVYSPDTPAQLP 210
            CRVCR E  + +PLY PC+C+GSI Y H+DCLLQWL+HS K+ CELC   F+FTP+YSPD P++LP
Sbjct:    5 CRVCRSEGTAEKPLYHPCVCTGSIKYIHQDCLLQWLKHSKKEYCELCKHRFAFTPIYSPDMPSRLP 70
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BLAST of mRNA_C-tenellus_contig1018.2.1 vs. uniprot
Match: A0A7S2RW40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.570e-27
Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:   10 ECRVCRGEPESGRPLYSPCLCSGSIMYTHEDCLLQWLQHSGKDSCELCSSPFSFTPVYSPDTPAQLP 210
            ECRVCRG  E GR L++PCLCSGSIMY H++CLLQWL+HSGKD CELC   F F PVY+ D P QLP
Sbjct:   16 ECRVCRGPEEEGRKLFAPCLCSGSIMYCHQECLLQWLKHSGKDRCELCGHQFQFNPVYAEDAPTQLP 82
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BLAST of mRNA_C-tenellus_contig1018.2.1 vs. uniprot
Match: A0A8C2ZLW5_CYCLU (Membrane associated ring-CH-type finger 6 n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2ZLW5_CYCLU)

HSP 1 Score: 100 bits (250), Expect = 6.810e-26
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 EVPECRVCRGEPESGRPLYSPCLCSGSIMYTHEDCLLQWLQHSGKDSCELCSSPFSFTPVYSPDTPAQLP 210
            E   CRVCR E  S +PLY PC+C+GSI + H++CL+QWL+HS K+ CELC   F+FTP+YSPD P++LP
Sbjct:    6 EADICRVCRSEGTSDKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSRLP 75
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BLAST of mRNA_C-tenellus_contig1018.2.1 vs. uniprot
Match: A0A8D3D183_SCOMX (Membrane associated ring-CH-type finger 6 n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3D183_SCOMX)

HSP 1 Score: 100 bits (250), Expect = 7.010e-26
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 EVPECRVCRGEPESGRPLYSPCLCSGSIMYTHEDCLLQWLQHSGKDSCELCSSPFSFTPVYSPDTPAQLP 210
            E   CRVCR E  S +PLY PC+C+GSI + H++CL+QWL+HS K+ CELC   F+FTP+YSPD P++LP
Sbjct:    6 EADICRVCRSEGTSDKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSRLP 75
[Close]
BLAST of mRNA_C-tenellus_contig1018.2.1 vs. uniprot
Match: A0A3B3ZEJ0_9GOBI (RING-CH-type domain-containing protein n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B3ZEJ0_9GOBI)

HSP 1 Score: 100 bits (249), Expect = 1.170e-25
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 EVPECRVCRGEPESGRPLYSPCLCSGSIMYTHEDCLLQWLQHSGKDSCELCSSPFSFTPVYSPDTPAQLP 210
            E   CRVCR E    +PLY PC+C+GSI + H++CLLQWL+HS K+ CELC   F+FTP+YSPD P++LP
Sbjct:    6 EADICRVCRSEGTQDKPLYHPCVCTGSIKFIHQECLLQWLKHSRKEYCELCKHRFAFTPIYSPDMPSRLP 75
[Close]
BLAST of mRNA_C-tenellus_contig1018.2.1 vs. uniprot
Match: A0A671K843_9TELE (E3 ubiquitin-protein ligase MARCH6 n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671K843_9TELE)

HSP 1 Score: 99.4 bits (246), Expect = 3.090e-25
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 EVPECRVCRGEPESGRPLYSPCLCSGSIMYTHEDCLLQWLQHSGKDSCELCSSPFSFTPVYSPDTPAQLP 210
            E   CRVCR E    +PLY PC+C+GSI + H++CL+QWL+HS K+ CELC   F+FTP+YSPD P++LP
Sbjct:    6 EADICRVCRSEGTQDKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSRLP 75
[Close]
BLAST of mRNA_C-tenellus_contig1018.2.1 vs. uniprot
Match: A0A672QID8_SINGR (Membrane associated ring-CH-type finger 6 n=2 Tax=Otophysi TaxID=186626 RepID=A0A672QID8_SINGR)

HSP 1 Score: 99.4 bits (246), Expect = 3.170e-25
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 EVPECRVCRGEPESGRPLYSPCLCSGSIMYTHEDCLLQWLQHSGKDSCELCSSPFSFTPVYSPDTPAQLP 210
            E   CRVCR E    +PLY PC+C+GSI + H++CL+QWL+HS K+ CELC   F+FTP+YSPD P++LP
Sbjct:    6 EADICRVCRSEGTQDKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSRLP 75
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1018.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNH4_9STRA8.710e-3379.17RING-CH-type domain-containing protein n=1 Tax=Tri... [more]
A0A6H5JWM1_9PHAE3.640e-3173.61RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
D8LBR1_ECTSI1.720e-3072.22RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
S4RAN7_PETMA4.870e-2763.64RING-CH-type domain-containing protein n=1 Tax=Pet... [more]
A0A7S2RW40_9STRA5.570e-2770.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8C2ZLW5_CYCLU6.810e-2658.57Membrane associated ring-CH-type finger 6 n=1 Tax=... [more]
A0A8D3D183_SCOMX7.010e-2658.57Membrane associated ring-CH-type finger 6 n=1 Tax=... [more]
A0A3B3ZEJ0_9GOBI1.170e-2558.57RING-CH-type domain-containing protein n=1 Tax=Per... [more]
A0A671K843_9TELE3.090e-2557.14E3 ubiquitin-protein ligase MARCH6 n=1 Tax=Sinocyc... [more]
A0A672QID8_SINGR3.170e-2557.14Membrane associated ring-CH-type finger 6 n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1018contigC-tenellus_contig1018:13121..13735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBR1
PFAMsRINGv
Model size216
Max annot lvl2759|Eukaryota
KEGG koko:K10661
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000176,GO:0000177,GO:0000178,GO:0000209,GO:0000291,GO:0000956,GO:0001101,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004536,GO:0004540,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006720,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009628,GO:0009698,GO:0009699,GO:0009892,GO:0009893,GO:0009987,GO:0010025,GO:0010033,GO:0010035,GO:0010143,GO:0010166,GO:0010243,GO:0010345,GO:0010467,GO:0010468,GO:0010498,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016021,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016180,GO:0016567,GO:0016740,GO:0016787,GO:0016788,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019748,GO:0019787,GO:0019899,GO:0019941,GO:0022613,GO:0030163,GO:0030176,GO:0030433,GO:0031123,GO:0031125,GO:0031126,GO:0031224,GO:0031227,GO:0031624,GO:0031974,GO:0031981,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0042254,GO:0042335,GO:0042802,GO:0043085,GO:0043144,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051341,GO:0051353,GO:0051603,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071025,GO:0071027,GO:0071028,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098827,GO:0140096,GO:0140097,GO:0140098,GO:1900490,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1905354,GO:1990381,GO:2001215
Exons2
Evalue2.81e-31
EggNOG OGsCOG5183@1|root,KOG1609@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_003040.1
EC2.3.2.27
Descriptionzinc ion binding
Cds size216
COG categoryA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789119.3943756-CDS-C-tenellus_contig1018:13120..132061680789119.3943756-CDS-C-tenellus_contig1018:13120..13206Choristocarpus tenellus KU2346CDSC-tenellus_contig1018 13121..13206 +
1680789119.4062047-CDS-C-tenellus_contig1018:13605..137351680789119.4062047-CDS-C-tenellus_contig1018:13605..13735Choristocarpus tenellus KU2346CDSC-tenellus_contig1018 13606..13735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1018.2.1prot_C-tenellus_contig1018.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1018 13121..13735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1018.2.1

>prot_C-tenellus_contig1018.2.1 ID=prot_C-tenellus_contig1018.2.1|Name=mRNA_C-tenellus_contig1018.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=72bp
EVPECRVCRGEPESGRPLYSPCLCSGSIMYTHEDCLLQWLQHSGKDSCEL
CSSPFSFTPVYSPDTPAQLPAW
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mRNA from alignment at C-tenellus_contig1018:13121..13735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1018.2.1 ID=mRNA_C-tenellus_contig1018.2.1|Name=mRNA_C-tenellus_contig1018.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=615bp|location=Sequence derived from alignment at C-tenellus_contig1018:13121..13735+ (Choristocarpus tenellus KU2346)
GAGGTCCCAGAGTGCAGGGTCTGCCGTGGAGAACCTGAGTCAGGACGCCC
TCTCTACTCACCTTGTCTATGTAGTGGATCGATCATGTGAGATGACTTTG
TTTACATACGTTCAAGCCACCAAATGCACCCTGCAATAAGTACAAATGTG
ATTATTGAGTGTGGTATTGTCACCCACCCCCATACTAGAACAGTAGCCAA
GTTGATATTCTGTTGCCATCTCTCCAATCATATCTTACAAGGCTCTGTAG
TATGTGATACATAGAATGGTCCTTCTCTGCTCCCTAACATGTTTGCTATT
TCCATTCTCGACCCTGCTCAGAGTAATCTTGAATAGACTGGCAGGGTGAC
CTTATTTCTTTCCCTGACCTGCCCTGCTCCTAATGGTGTGTCCTGTGAGA
TGAACAAAAAAAATTTCTTGTGGAAAAATTATCACCATTACATGTTTTCT
TGTCAAAGAAATAATTATATTTTCTTTTTCTAAAGGTACACCCATGAAGA
CTGCCTCCTTCAGTGGCTGCAGCATAGTGGCAAGGACAGCTGTGAGCTCT
GCAGCTCTCCGTTCTCCTTTACTCCTGTGTACTCTCCAGACACGCCTGCT
CAGCTGCCCGCTTGG
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Coding sequence (CDS) from alignment at C-tenellus_contig1018:13121..13735+

>mRNA_C-tenellus_contig1018.2.1 ID=mRNA_C-tenellus_contig1018.2.1|Name=mRNA_C-tenellus_contig1018.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=216bp|location=Sequence derived from alignment at C-tenellus_contig1018:13121..13735+ (Choristocarpus tenellus KU2346)
GAGGTCCCAGAGTGCAGGGTCTGCCGTGGAGAACCTGAGTCAGGACGCCC
TCTCTACTCACCTTGTCTATGTAGTGGATCGATCATGTACACCCATGAAG
ACTGCCTCCTTCAGTGGCTGCAGCATAGTGGCAAGGACAGCTGTGAGCTC
TGCAGCTCTCCGTTCTCCTTTACTCCTGTGTACTCTCCAGACACGCCTGC
TCAGCTGCCCGCTTGG
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