mRNA_C-tenellus_contig10176.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10176.1.1
Unique NamemRNA_C-tenellus_contig10176.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10176.1.1 vs. uniprot
Match: D8LNC2_ECTSI (COP9 signalosome complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNC2_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.390e-29
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:   13 QDFERILKTHHASFMGDPFIRGHMDDLLRTMRTQ------------VVLEAIAPYTRITLSHLAQELNDIPEEEVEDLLVSLIINGKVDGKVDQV 261
            +DFERILKTH AS MGDPFI+ ++DD+LRTMRTQ            V+L+AIAPYTR+ L +LA ELNDIP  +VEDLLVS I++GKVDGK+DQV
Sbjct:  352 KDFERILKTHRASLMGDPFIKLYIDDILRTMRTQKVSIMSNNTHFQVLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQV 446
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BLAST of mRNA_C-tenellus_contig10176.1.1 vs. uniprot
Match: A0A7S2V1L2_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1L2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.990e-26
Identity = 47/81 (58.02%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:   19 FERILKTHHASFMGDPFIRGHMDDLLRTMRTQVVLEAIAPYTRITLSHLAQELNDIPEEEVEDLLVSLIINGKVDGKVDQV 261
            FERILK+H  S M D FI+ ++DDL +T+ T+V+++ I PYTR+++SH+A ELN+IPE EVE LLV+LI++GK+ GK+DQV
Sbjct:   92 FERILKSHSHSLMSDSFIKAYIDDLRQTICTKVLVKVIGPYTRVSISHMASELNNIPETEVEALLVALILDGKIQGKIDQV 172
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BLAST of mRNA_C-tenellus_contig10176.1.1 vs. uniprot
Match: A0A7R9WPC4_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WPC4_9STRA)

HSP 1 Score: 104 bits (260), Expect = 7.150e-26
Identity = 49/82 (59.76%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:   16 DFERILKTHHASFMGDPFIRGHMDDLLRTMRTQVVLEAIAPYTRITLSHLAQELNDIPEEEVEDLLVSLIINGKVDGKVDQV 261
            DFE+IL+ +    M D FIR H++DLLRT+RTQV+   I PYTRI+LS +++ELNDIP E+VE LL+SLI+NG ++GK+DQV
Sbjct:   89 DFEKILRRNRGRIMKDEFIREHIEDLLRTIRTQVLRRTIRPYTRISLSAISKELNDIPVEDVESLLISLILNGSLNGKLDQV 170
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BLAST of mRNA_C-tenellus_contig10176.1.1 vs. uniprot
Match: A0A367JKE9_RHIAZ (COP9 signalosome complex subunit 2 n=1 Tax=Rhizopus azygosporus TaxID=86630 RepID=A0A367JKE9_RHIAZ)

HSP 1 Score: 102 bits (254), Expect = 7.940e-26
Identity = 46/82 (56.10%), Postives = 69/82 (84.15%), Query Frame = 1 
Query:   16 DFERILKTHHASFMGDPFIRGHMDDLLRTMRTQVVLEAIAPYTRITLSHLAQELNDIPEEEVEDLLVSLIINGKVDGKVDQV 261
            +FE+ILK +H + MGDPFIR ++DD+LR +RTQVV++ I PYTRI ++ ++++LN IPE+EVE+LLV LI++ ++ GK+DQV
Sbjct:   41 EFEQILKANHNAIMGDPFIRAYIDDVLRNIRTQVVIKLIKPYTRIDINFISKQLN-IPEDEVEELLVGLILDDRISGKIDQV 121
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BLAST of mRNA_C-tenellus_contig10176.1.1 vs. uniprot
Match: A0A7S2S7L9_9STRA (COP9 signalosome complex subunit 2 (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S7L9_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.290e-24
Identity = 46/83 (55.42%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:   13 QDFERILKTHHASFMGDPFIRGHMDDLLRTMRTQVVLEAIAPYTRITLSHLAQELNDIPEEEVEDLLVSLIINGKVDGKVDQV 261
            + FERIL+ +    M D FIR H+ DLLRT+RTQV+ + IAPY RITL+ ++ +LN IP ++VE+LLV+LI++GK+DG++DQV
Sbjct:   58 EKFERILQRNEGQIMDDEFIREHLADLLRTIRTQVLRKIIAPYKRITLTAISTKLNGIPVDDVENLLVALILDGKLDGRIDQV 140
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BLAST of mRNA_C-tenellus_contig10176.1.1 vs. uniprot
Match: A0A7S3W5Y9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W5Y9_9SPIT)

HSP 1 Score: 103 bits (256), Expect = 4.830e-24
Identity = 51/83 (61.45%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:   13 QDFERILKTHHASFMGDPFIRGHMDDLLRTMRTQVVLEAIAPYTRITLSHLAQELNDIPEEEVEDLLVSLIINGKVDGKVDQV 261
            ++FE++LK H AS MGD FI+ ++DDLL+ +RTQV+L  I PYTRI LS +A ELN IP  EVEDLLVSLI++G +DG VDQ+
Sbjct:  315 REFEKVLKQHSASVMGDAFIKLYLDDLLKNIRTQVLLRVIRPYTRIRLSFIATELN-IPLNEVEDLLVSLILDGHIDGHVDQI 396
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BLAST of mRNA_C-tenellus_contig10176.1.1 vs. uniprot
Match: A0A167R3L1_PHYB8 (COP9 signalosome complex subunit 2 n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167R3L1_PHYB8)

HSP 1 Score: 102 bits (255), Expect = 7.110e-24
Identity = 48/83 (57.83%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:   13 QDFERILKTHHASFMGDPFIRGHMDDLLRTMRTQVVLEAIAPYTRITLSHLAQELNDIPEEEVEDLLVSLIINGKVDGKVDQV 261
            ++FE+ILKT+H S MGDPFIR ++DD+L+ +RTQV+++ I PYTRI L  ++++LN IP EEVE+LLV LI+N K+ G++DQV
Sbjct:  324 REFEKILKTNHNSIMGDPFIRTYIDDVLKNIRTQVLIKLIKPYTRIELGFISKQLN-IPVEEVEELLVGLILNEKIAGRIDQV 405
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BLAST of mRNA_C-tenellus_contig10176.1.1 vs. uniprot
Match: A0A7S2I382_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I382_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.440e-23
Identity = 47/83 (56.63%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:   13 QDFERILKTHHASFMGDPFIRGHMDDLLRTMRTQVVLEAIAPYTRITLSHLAQELNDIPEEEVEDLLVSLIINGKVDGKVDQV 261
            +DFE IL+ +    M D F+R H+ DLLRT+RTQV+ + I PYTRI++S +A+ELN IP  +VE LLVSLI++GK+DG++DQV
Sbjct:  242 KDFEGILQRNEGKIMDDEFVREHVSDLLRTIRTQVLRKVIGPYTRISVSAIARELNYIPVSDVESLLVSLILDGKLDGRIDQV 324
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BLAST of mRNA_C-tenellus_contig10176.1.1 vs. uniprot
Match: A0A4P9XX41_9FUNG (COP9 signalosome complex subunit 2 n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XX41_9FUNG)

HSP 1 Score: 99.0 bits (245), Expect = 1.830e-22
Identity = 47/87 (54.02%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    1 HSLTQDFERILKTHHASFMGDPFIRGHMDDLLRTMRTQVVLEAIAPYTRITLSHLAQELNDIPEEEVEDLLVSLIINGKVDGKVDQV 261
            H    +FERIL  +  S MGDPFI  ++ D+LRT+RTQV+LE I PYTRI +  +AQ+LN I   EVE+LL+ L+++GK+DG++DQV
Sbjct:  318 HKEIHEFERILSKNKESIMGDPFIEEYIADVLRTIRTQVLLELIRPYTRIDIGSIAQQLN-ITSNEVEELLIGLVLDGKIDGRIDQV 403
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BLAST of mRNA_C-tenellus_contig10176.1.1 vs. uniprot
Match: A0A7J9J6P9_9ROSI (PCI domain-containing protein n=6 Tax=rosids TaxID=71275 RepID=A0A7J9J6P9_9ROSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.190e-22
Identity = 43/82 (52.44%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:   16 DFERILKTHHASFMGDPFIRGHMDDLLRTMRTQVVLEAIAPYTRITLSHLAQELNDIPEEEVEDLLVSLIINGKVDGKVDQV 261
            +FE+ILK++  + M DPFIR +++DLL+ +RTQV+L+ I PYTRI +  +++ELN +PE++VE LLVSLI++ ++DG +DQV
Sbjct:  112 EFEKILKSNRRTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN-VPEKDVEQLLVSLILDNRIDGHIDQV 192
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10176.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC2_ECTSI1.390e-2964.21COP9 signalosome complex subunit 2 n=2 Tax=Ectocar... [more]
A0A7S2V1L2_9STRA5.990e-2658.02COP9 signalosome complex subunit 2 n=1 Tax=Fibroca... [more]
A0A7R9WPC4_9STRA7.150e-2659.76COP9 signalosome complex subunit 2 n=1 Tax=Crasped... [more]
A0A367JKE9_RHIAZ7.940e-2656.10COP9 signalosome complex subunit 2 n=1 Tax=Rhizopu... [more]
A0A7S2S7L9_9STRA3.290e-2455.42COP9 signalosome complex subunit 2 (Fragment) n=1 ... [more]
A0A7S3W5Y9_9SPIT4.830e-2461.45Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A167R3L1_PHYB87.110e-2457.83COP9 signalosome complex subunit 2 n=1 Tax=Phycomy... [more]
A0A7S2I382_9STRA7.440e-2356.63COP9 signalosome complex subunit 2 n=1 Tax=Helicot... [more]
A0A4P9XX41_9FUNG1.830e-2254.02COP9 signalosome complex subunit 2 n=1 Tax=Thamnoc... [more]
A0A7J9J6P9_9ROSI2.190e-2252.44PCI domain-containing protein n=6 Tax=rosids TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10176contigC-tenellus_contig10176:143..406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LNC2
Preferred nameCOPS2
PFAMsPCI
Model size264
Max annot lvl2759|Eukaryota
KEGG koko:K12176
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0003712,GO:0003714,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007399,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008180,GO:0008230,GO:0008231,GO:0008283,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0014706,GO:0016043,GO:0016070,GO:0016333,GO:0016922,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030182,GO:0030582,GO:0030584,GO:0030718,GO:0030727,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035914,GO:0036099,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044798,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051427,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0060537,GO:0060538,GO:0060968,GO:0061061,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0080090,GO:0090052,GO:0090054,GO:0090304,GO:0090575,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue2.28e-30
EggNOG OGsCOG5159@1|root,KOG1464@2759|Eukaryota
Descriptionprotein deneddylation
Cds size264
COG categoryO
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789119.2479346-CDS-C-tenellus_contig10176:142..4061680789119.2479346-CDS-C-tenellus_contig10176:142..406Choristocarpus tenellus KU2346CDSC-tenellus_contig10176 143..406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10176.1.1prot_C-tenellus_contig10176.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10176 143..406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10176.1.1

>prot_C-tenellus_contig10176.1.1 ID=prot_C-tenellus_contig10176.1.1|Name=mRNA_C-tenellus_contig10176.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=88bp
HSLTQDFERILKTHHASFMGDPFIRGHMDDLLRTMRTQVVLEAIAPYTRI
TLSHLAQELNDIPEEEVEDLLVSLIINGKVDGKVDQV*
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mRNA from alignment at C-tenellus_contig10176:143..406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10176.1.1 ID=mRNA_C-tenellus_contig10176.1.1|Name=mRNA_C-tenellus_contig10176.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=264bp|location=Sequence derived from alignment at C-tenellus_contig10176:143..406+ (Choristocarpus tenellus KU2346)
CACTCACTAACGCAGGACTTTGAGCGCATCTTGAAGACGCACCACGCCTC
CTTCATGGGAGACCCTTTCATCCGCGGGCACATGGACGACCTGCTTAGAA
CCATGCGGACGCAGGTGGTACTCGAGGCGATCGCCCCTTACACACGCATC
ACTCTCTCCCACTTGGCCCAGGAGCTCAACGACATTCCTGAGGAGGAGGT
GGAAGACCTGCTGGTCTCCCTCATCATCAATGGGAAGGTTGACGGCAAGG
TCGATCAGGTGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10176:143..406+

>mRNA_C-tenellus_contig10176.1.1 ID=mRNA_C-tenellus_contig10176.1.1|Name=mRNA_C-tenellus_contig10176.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=264bp|location=Sequence derived from alignment at C-tenellus_contig10176:143..406+ (Choristocarpus tenellus KU2346)
CACTCACTAACGCAGGACTTTGAGCGCATCTTGAAGACGCACCACGCCTC
CTTCATGGGAGACCCTTTCATCCGCGGGCACATGGACGACCTGCTTAGAA
CCATGCGGACGCAGGTGGTACTCGAGGCGATCGCCCCTTACACACGCATC
ACTCTCTCCCACTTGGCCCAGGAGCTCAACGACATTCCTGAGGAGGAGGT
GGAAGACCTGCTGGTCTCCCTCATCATCAATGGGAAGGTTGACGGCAAGG
TCGATCAGGTGTGA
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