mRNA_C-tenellus_contig1017.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1017.3.1
Unique NamemRNA_C-tenellus_contig1017.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1017.3.1 vs. uniprot
Match: A0A6H5L316_9PHAE (SHSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L316_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.040e-27
Identity = 120/397 (30.23%), Postives = 183/397 (46.10%), Query Frame = 1 
Query:   25 PAKITQSPTEYKLTFNFPELVTRDDVHLSVKDRILTVEAQLSQENDNE---NRLGWIARSSYTEVVSRSFLLPEGVDASGISVEWGSGDGKAEVTFPMETEI-----------ITSETSKAGGNGEVDGEQPDRHANIGRSKESWS-GSA------------------EYLSNLSSTEERRPPRSIM--DAFDQEFEDLEKLMWGDASSPFGFPGRVFFPTKEEVAKRFKDAREKGAAR------------------VKAINRTSMAVNVS-EKDDDTYLIRVDLPEGATRKDVKLTILPGQTLLKISFSPMTEVSSVGRFRFGGSKTVRLPRDADVTTITARFEAEDVKTEEAGVED----------------GVSAVEVMVSKAQRLDPIQINIL 1005
            PA I ++   Y L F+ P  V  D + +SV DR+LTV+A +++E + +    R GW+ RSS  + VSRSF+LPEG+  S  +      +GKAEV F  +  +           IT  T+    +       P   A+ GR+  + S GS                   +  S  +++ E RP R     +A DQEF +  K MWG+         R+  PT+EE+A++   ARE    R                  V A+ R +MA N+S  ++  +Y++R  LPEG TR+DVKLT+ P  ++     +  T  +   R  +   K V LP+DA ++ I+A+FEAE  +  +  +E+                 V+ VEV V KA    P  + IL
Sbjct:  122 PAVILETNDLYTLAFDLPAGVDHDGLEVSVSDRLLTVKASITREQEADPFITRGGWVTRSSRVDSVSRSFVLPEGLVESSATASLS--EGKAEVRFNKDKSVRGEAASTAAPPITPSTTGTAASAGDTTAAPTSSADAGRTPPTDSTGSTAVAEXXXXXXXXXXXXPVDAASTPAASTEPRPSRPTFPFEAVDQEFREFAKAMWGEHVLE-----RLQVPTQEELAEQAAMAREAWTKRXXXXXXXXXXXXXXXXKRVLAMRRATMAANISLSEEGSSYVVRFALPEGTTREDVKLTVNPSNSIRVAVSARSTAAAGPDRPVY---KDVVLPKDAILSEISAKFEAEQHRDGKGTIEEEGEEATAGGGGATKEGAVAGVEVTVGKASPPQPKHVEIL 508
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BLAST of mRNA_C-tenellus_contig1017.3.1 vs. uniprot
Match: D8LP10_ECTSI (SHSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP10_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.380e-24
Identity = 117/402 (29.10%), Postives = 178/402 (44.28%), Query Frame = 1 
Query:   25 PAKITQSPTEYKLTFNFPELVTRDDVHLSVKDRILTVEAQLSQENDNE---NRLGWIARSSYTEVVSRSFLLPEGVDASGISVEWGSGDGKAEVTFPMETEI-----------ITSETSKAGGNGEVDGEQPDRHANIGRSKESWSGSAE-------------------YLSNLSSTEERRP--PRSIMDAFDQEFEDLEKLMWGDASSPFGFPGRVFFPTKEEVAKRFKDAREKGAAR------------------VKAINRTSMAVNVS-EKDDDTYLIRVDLPEGATRKDVKLTILPGQTLLKISFSPMTEVSSVGRFRFGGS-----KTVRLPRDADVTTITARFEAEDVKTEEAGVEDG----------------VSAVEVMVSKAQRLDPIQINIL 1005
            P  I ++   Y L F+ P  V  D + +SV DR+LTV+A +++E + +    R GW+ RSS  + VSRSF+LPEG+  S  +      + KAEV F  +  +           +T  T+    +       P   A+ GR+  + S  +                             E RP  P S  +A DQEF +  K MWG+         R+  PT+EE+A++   ARE  A R                  V A+ R +MA ++S  +D  +Y++R  LPEG TR+DVKLT+ P +++ +++ S  +                  K V LP+DA ++ I+A+FEAE    E+   E+G                V+ VEV V KA    P  + IL
Sbjct:  118 PVIILETDDLYALAFDLPAGVDHDGLDVSVSDRLLTVKASITREQEADPFTTRGGWVTRSSRVDSVSRSFVLPEGLVESSATASLA--ESKAEVRFNKDKSVRGEAASTAAPPVTPSTTGTVASAGDTTAAPASSADAGRTPLTDSTGSXPXXXXXXXXXXXXXXXXXXXXXXXXXXXEPRPSRPASPFEAVDQEFREFAKAMWGEDVLE-----RLQVPTQEELAEQAAMAREAWAKREAXXXXXXXXXXXXXXXRVLAMRRATMAADISLSEDGSSYVVRFALPEGTTREDVKLTVNPSKSI-RVAVSATSXXXXXXXXXXXXPDRSVYKDVALPKDAILSEISAKFEAEQHPDEKGNAEEGGEKATAGGGGATKEGAVAGVEVTVGKASPPQPKNVEIL 511
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1017.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L316_9PHAE5.040e-2730.23SHSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LP10_ECTSI2.380e-2429.10SHSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1017contigC-tenellus_contig1017:6910..9979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2297
Hectar predicted targeting categoryother localisation
Exons3
Cds size702
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789118.9562097-UTR-C-tenellus_contig1017:6909..72151680789118.9562097-UTR-C-tenellus_contig1017:6909..7215Choristocarpus tenellus KU2346UTRC-tenellus_contig1017 6910..7215 +
1680789119.0056353-UTR-C-tenellus_contig1017:8690..99791680789119.0056353-UTR-C-tenellus_contig1017:8690..9979Choristocarpus tenellus KU2346UTRC-tenellus_contig1017 8691..9979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789118.9706736-CDS-C-tenellus_contig1017:7215..73641680789118.9706736-CDS-C-tenellus_contig1017:7215..7364Choristocarpus tenellus KU2346CDSC-tenellus_contig1017 7216..7364 +
1680789118.9800231-CDS-C-tenellus_contig1017:7505..77571680789118.9800231-CDS-C-tenellus_contig1017:7505..7757Choristocarpus tenellus KU2346CDSC-tenellus_contig1017 7506..7757 +
1680789118.9921324-CDS-C-tenellus_contig1017:8389..86901680789118.9921324-CDS-C-tenellus_contig1017:8389..8690Choristocarpus tenellus KU2346CDSC-tenellus_contig1017 8390..8690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1017.3.1prot_C-tenellus_contig1017.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1017 7216..8690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1017.3.1

>prot_C-tenellus_contig1017.3.1 ID=prot_C-tenellus_contig1017.3.1|Name=mRNA_C-tenellus_contig1017.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=234bp
METEIITSETSKAGGNGEVDGEQPDRHANIGRSKESWSGSAEYLSNLSST
EERRPPRSIMDAFDQEFEDLEKLMWGDASSPFGFPGRVFFPTKEEVAKRF
KDAREKGAARVKAINRTSMAVNVSEKDDDTYLIRVDLPEGATRKDVKLTI
LPGQTLLKISFSPMTEVSSVGRFRFGGSKTVRLPRDADVTTITARFEAED
VKTEEAGVEDGVSAVEVMVSKAQRLDPIQINIL*
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mRNA from alignment at C-tenellus_contig1017:6910..9979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1017.3.1 ID=mRNA_C-tenellus_contig1017.3.1|Name=mRNA_C-tenellus_contig1017.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3070bp|location=Sequence derived from alignment at C-tenellus_contig1017:6910..9979+ (Choristocarpus tenellus KU2346)
ATTACGCCCACTGTTGACTTGACGCCAGCCAAGATCACGCAGTCTCCTAC
GGAATACAAGCTCACCTTCAACTTTCCAGAGTTGGTCACACGAGATGATG
TCCATCTGTCGGTCAAAGACCGGATTCTCACCGTCGAGGCTCAATTGTCT
CAGGAGAATGACAATGAGAATCGCTTGGGGTGGATAGCGCGGTCTAGCTA
CACGGAGGTGGTTTCGCGCTCGTTCTTGCTTCCCGAAGGAGTAGATGCAT
CGGGCATCTCAGTTGAGTGGGGTTCTGGAGATGGCAAGGCCGAGGTGACG
TTCCCCATGGAGACTGAGATTATTACGTCAGAGACGTCCAAAGCGGGTGG
GAATGGTGAAGTAGATGGGGAGCAACCGGATCGGCATGCGAATATCGGAA
GAAGCAAGGAATCTTGGTCTGGCTCAGCCGAGTACCTGTCCAACCTAAGC
TCCACGTCCATGGATAAGGGCAAAGATGCCACCTCCAAGGTTGCTGCGGA
CGCCGATCCCAGCAGCAGTGATGGAAGAATAAATGTCGAGGATAATGCTT
CATTGTCTGGAGACGAAGTTGTTGGATCGCAGCAAAAACAACAGAGGGAA
GAGCGCCGTCCGCCCCGTTCTATCATGGATGCGTTCGACCAGGAGTTTGA
GGATCTGGAGAAGCTGATGTGGGGCGATGCTTCTTCACCGTTCGGGTTTC
CTGGTAGGGTGTTTTTCCCGACTAAGGAAGAGGTAGCTAAGCGCTTCAAG
GATGCTCGGGAAAAAGGGGCAGCGAGGGTCAAGGCTATCAATCGTACATC
CATGGCAGTGAACGTGTCTGAGAAGGATGACGATACCTACCTGATTAGGT
GAGATTGGAACGAAGTATTGCTGTGATTGTTATTTTTGGCTGGCTATGAA
CTGGATCTCCCTCCTTCTTTTCCGTTAACTGAACAGTAGTCATATTTTCG
CGTACTAGTTCCGTCTGTCGCTGCTGTCGTTGTGATTAGAGTTACTCGTC
TCTTTTAAAAACTGTCTATGTTGTGCCTGTGGGTATTACAACCGATGTTG
TTATTCATTAATACTATATTAAATGGTACAGTAGTTTTCGCAAGAAGAAA
TATGATGCGTGTTAGTACCCGTGGCAAGCACCTGGAAATGATAAAACAGA
ACGGGGAGTGGGACTGGAGGGATACGCAAATCACCGCCAGCTTCGATTAT
TGGTTGCGAATATTTGATGATTATATGGAAAGATAGTACGCGAGTAGTTT
GGTAGTTGAGGACCCTTCACTCTTGACTCTTTTCACTGTATCTCTCGACA
ATGTTTCCCAGTCATCCAGCGGGACTGGACTCTATTTGAGGCCAAGTATC
ACAACGAGTAGCAATAAATTTATGGACAGGCCTCTTATCTGTTCGCGAAC
GAACCTCTACCCCCTTCCTTACCTATCCCTCTCACCCTTTACACCCTACC
CATCATGCACTCTCTGATCACACACTCCAGGGTGGATCTTCCTGAGGGGG
CAACGCGCAAAGACGTCAAGCTCACTATCCTGCCTGGTCAAACCTTGCTC
AAGATCTCCTTCAGTCCCATGACCGAAGTCTCCTCGGTTGGTCGCTTCAG
ATTTGGTGGATCAAAGACGGTACGACTACCGAGGGATGCCGATGTGACTA
CCATCACTGCACGTTTTGAGGCCGAAGATGTTAAAACGGAGGAAGCAGGT
GTGGAGGATGGCGTTTCTGCTGTGGAGGTGATGGTGTCAAAGGCTCAGCG
CCTAGATCCCATCCAGATCAATATTCTGTGAGCCAACGAGTTCCGCCAAA
CACTGTGATGTTGGGCATGTGTATAAAGGAAGGACATGAGAAAGGTTGTT
GAGTTTAGTCTCCTGACCCTTCTCCCTTCTGCTAAGAGCAGTTGCAGATA
CACTACATGCATTTCTTTTGTTCACTGGTAGGGATCTGGAGAGAGGGCAT
GTTCTGGTGTACAGAAAAGAAGGGAAGTTCCATAGCGCTCCCTCCTCCCC
TTTCTGCGACTTGTGCTCTGGGGCAAGTCGTATATTCCTAGAGGCACTGG
TGCCTTTACCTCTATGGCAAGAAAGTTAAGTGTGCCTTGGAGTAGTTTAA
TGGTATGTGCCTAGAGAAATCAGTGCTCGGGGGAGTTGGTGTCATTGTTG
GAGTGCTGCTGATTTGATTATTTTATTGACACGCTTGCTTTGACCAGGAC
GTTGTTGAAGATGTCATATTTTGGTGTTGAGCGCACTTTTTCTGGAAAAA
AGAGTGGTCTGCTCTAGAAAGCAAGATGCCTGTTGATGTTGAAGAATACC
AACAGGAAAACGGGGATTGCCAGAGGTTGTGGCGACTTTTTCACTTTACC
CTTGCCATAATATATATATATATGGAGATTTCTCACGTAAAGAGCGGAGC
GCTTTGACTCAGTGTTTTTTTCTATGAATTGGTGATGCATGTTAGGAGTT
TGGGGCAGCTCTCAATAGATTTATCAAGTAGAGGGAACGTGAGAGGAGGG
GGTGGTTGTAATGCAAATCAATGGTGTTATCTTGCAGCATCGAATCCCCT
CTCCATGTATGCTATGCGTAATGAATGGTAGATTAGTTTAGGTCTTAGTC
ACGATCAACTTCTTGAATGGGTATGGACACGTCACAGGCAGTAGCAAAGC
GCGCGCAATTTATGCCATGAGTGCCGTGTTGAGTGGAGGTTGTAGCGAAT
GAATATATGTATATGTATATGATGTTGTCATTGGAACAATGTGCGGGGCC
AAATAATGTGTAGTTTACTTAGTAATAATGACTGATAATTGATTTCAAGA
CAAACCCTTTCTTGTTGTTTTAGTCTGTGTGAACAAACAGAACTTGTTAG
TGTGGCAACTAAAGCGTGTTCCCACAAGCTAGCTCCCTTCATCTTTGTGA
GCTCAGTTTTGCTCACATGGGCTTGAGCGAAATACGAATCCCCTCTACTG
TAGAGTTTTGCCGCCTTCACATCAACACCAAACAAGATCCTACCTTTTTG
TTTTATCTGAGAGACATTTTCATTTATGAAAATCCAGCATGATGAAGCGG
CAAAGAAGAGTGGCCCATCG
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Coding sequence (CDS) from alignment at C-tenellus_contig1017:6910..9979+

>mRNA_C-tenellus_contig1017.3.1 ID=mRNA_C-tenellus_contig1017.3.1|Name=mRNA_C-tenellus_contig1017.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=702bp|location=Sequence derived from alignment at C-tenellus_contig1017:6910..9979+ (Choristocarpus tenellus KU2346)
ATGGAGACTGAGATTATTACGTCAGAGACGTCCAAAGCGGGTGGGAATGG
TGAAGTAGATGGGGAGCAACCGGATCGGCATGCGAATATCGGAAGAAGCA
AGGAATCTTGGTCTGGCTCAGCCGAGTACCTGTCCAACCTAAGCTCCACG
GAAGAGCGCCGTCCGCCCCGTTCTATCATGGATGCGTTCGACCAGGAGTT
TGAGGATCTGGAGAAGCTGATGTGGGGCGATGCTTCTTCACCGTTCGGGT
TTCCTGGTAGGGTGTTTTTCCCGACTAAGGAAGAGGTAGCTAAGCGCTTC
AAGGATGCTCGGGAAAAAGGGGCAGCGAGGGTCAAGGCTATCAATCGTAC
ATCCATGGCAGTGAACGTGTCTGAGAAGGATGACGATACCTACCTGATTA
GGGTGGATCTTCCTGAGGGGGCAACGCGCAAAGACGTCAAGCTCACTATC
CTGCCTGGTCAAACCTTGCTCAAGATCTCCTTCAGTCCCATGACCGAAGT
CTCCTCGGTTGGTCGCTTCAGATTTGGTGGATCAAAGACGGTACGACTAC
CGAGGGATGCCGATGTGACTACCATCACTGCACGTTTTGAGGCCGAAGAT
GTTAAAACGGAGGAAGCAGGTGTGGAGGATGGCGTTTCTGCTGTGGAGGT
GATGGTGTCAAAGGCTCAGCGCCTAGATCCCATCCAGATCAATATTCTGT
GA
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