mRNA_C-tenellus_contig10167.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10167.1.1
Unique NamemRNA_C-tenellus_contig10167.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10167.1.1 vs. uniprot
Match: A0A0P1A982_PLAHL (Gag-pol polyprotein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A982_PLAHL)

HSP 1 Score: 55.8 bits (133), Expect = 2.870e-7
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 MWAAVMTRPDIADAVREVAKYSSSPKTAHWCAVRRVFEYLNTSK 132
            M+AA+ TRPD+A AV EVAK+   P  +HW A RRV EYL +++
Sbjct:  167 MYAAICTRPDVAHAVGEVAKFCEMPNKSHWLAARRVLEYLVSTQ 210
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BLAST of mRNA_C-tenellus_contig10167.1.1 vs. uniprot
Match: A0A6H5JGZ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGZ8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.910e-7
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 MWAAVMTRPDIADAVREVAKYSSSPKTAHWCAVRRVFEYLNTSKCWIG 144
            MW A  TRPDIA+AVR VA+Y +SPK  HW A   V  Y+ T+  W+G
Sbjct:  205 MWMATQTRPDIANAVRAVARYCASPKMVHWKATLGVLGYVWTTS-WMG 251
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BLAST of mRNA_C-tenellus_contig10167.1.1 vs. uniprot
Match: A0A6H5K1X1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.000e-7
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 MWAAVMTRPDIADAVREVAKYSSSPKTAHWCAVRRVFEYLNTSKCWIG 144
            MW A  TRPDIA+AVR VA+Y +SPK  HW A   +  Y+  +  W+G
Sbjct:  204 MWLATQTRPDIANAVRAVARYCASPKMVHWTAALGILGYVRRTS-WMG 250
[Close]
BLAST of mRNA_C-tenellus_contig10167.1.1 vs. uniprot
Match: A0A6H5K5Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Y3_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.140e-7
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 MWAAVMTRPDIADAVREVAKYSSSPKTAHWCAVRRVFEYLNTSKCWIG 144
            MW A  TRPDIA+AVR VA+Y +SPK  HW A   +  Y+  ++ W+G
Sbjct:  713 MWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTR-WMG 759
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BLAST of mRNA_C-tenellus_contig10167.1.1 vs. uniprot
Match: A0A0C3PD59_PHLGI (Uncharacterized protein n=1 Tax=Phlebiopsis gigantea 11061_1 CR5-6 TaxID=745531 RepID=A0A0C3PD59_PHLGI)

HSP 1 Score: 55.1 bits (131), Expect = 5.720e-7
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 MWAAVMTRPDIADAVREVAKYSSSPKTAHWCAVRRVFEYLNTSK 132
            M+AAV TRPDIA AV ++A+YS +P   HW A++RVF YL +++
Sbjct: 1096 MYAAVGTRPDIAYAVFQLARYSENPGITHWTALKRVFAYLKSTR 1139
[Close]
BLAST of mRNA_C-tenellus_contig10167.1.1 vs. uniprot
Match: A0A6H5JMV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV5_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 6.050e-7
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 MWAAVMTRPDIADAVREVAKYSSSPKTAHWCAVRRVFEYLNTSKCWIG 144
            MW A  TRPDIA+AVR VA+Y +SPK  HW A   +  Y+  +  W+G
Sbjct:   65 MWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTS-WMG 111
[Close]
BLAST of mRNA_C-tenellus_contig10167.1.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 6.910e-7
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 MWAAVMTRPDIADAVREVAKYSSSPKTAHWCAVRRVFEYLNTSKCWIG 144
            MW A  TRPDIA+AVR VA+Y +SPK  HW A   +  Y+  +  W+G
Sbjct:   80 MWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTS-WMG 126
[Close]
BLAST of mRNA_C-tenellus_contig10167.1.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 7.000e-7
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 MWAAVMTRPDIADAVREVAKYSSSPKTAHWCAVRRVFEYLNTSKCWIG 144
            MW A  TRPDIA+AVR VA+Y +SPK  HW A   +  Y+  +  W+G
Sbjct:  108 MWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTS-WMG 154
[Close]
BLAST of mRNA_C-tenellus_contig10167.1.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 7.350e-7
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 MWAAVMTRPDIADAVREVAKYSSSPKTAHWCAVRRVFEYLNTSKCWIG 144
            MW A  TRPDIA+AVR VA+Y +SPK  HW A   +  Y+  +  W+G
Sbjct:  163 MWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTS-WMG 209
[Close]
BLAST of mRNA_C-tenellus_contig10167.1.1 vs. uniprot
Match: A0A6H5JSA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA7_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 7.360e-7
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 MWAAVMTRPDIADAVREVAKYSSSPKTAHWCAVRRVFEYLNTSKCWIG 144
            MW A  TRPDIA+AVR VA+Y +SPK  HW A   +  Y+  +  W+G
Sbjct:  265 MWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTS-WMG 311
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10167.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0P1A982_PLAHL2.870e-754.55Gag-pol polyprotein n=1 Tax=Plasmopara halstedii T... [more]
A0A6H5JGZ8_9PHAE2.910e-754.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1X1_9PHAE4.000e-750.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K5Y3_9PHAE4.140e-750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0C3PD59_PHLGI5.720e-754.55Uncharacterized protein n=1 Tax=Phlebiopsis gigant... [more]
A0A6H5JMV5_9PHAE6.050e-750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8K2_9PHAE6.910e-750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE7.000e-750.00Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE7.350e-750.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSA7_9PHAE7.360e-750.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10167contigC-tenellus_contig10167:378..612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog37727.XP_002153681.1
PFAMsRVT_2,gag_pre-integrs,rve
Model size235
Max annot lvl4751|Fungi
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,39W4B@33154|Opisthokonta,3P15U@4751|Fungi,3QR1M@4890|Ascomycota,20M77@147545|Eurotiomycetes,3SAAC@5042|Eurotiales
DescriptionEncoded by
Cds size150
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789118.8320155-CDS-C-tenellus_contig10167:377..5271680789118.8320155-CDS-C-tenellus_contig10167:377..527Choristocarpus tenellus KU2346CDSC-tenellus_contig10167 378..527 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789118.8454132-UTR-C-tenellus_contig10167:527..6121680789118.8454132-UTR-C-tenellus_contig10167:527..612Choristocarpus tenellus KU2346UTRC-tenellus_contig10167 528..612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10167.1.1prot_C-tenellus_contig10167.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10167 378..527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10167.1.1

>prot_C-tenellus_contig10167.1.1 ID=prot_C-tenellus_contig10167.1.1|Name=mRNA_C-tenellus_contig10167.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=50bp
MWAAVMTRPDIADAVREVAKYSSSPKTAHWCAVRRVFEYLNTSKCWIGF*
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mRNA from alignment at C-tenellus_contig10167:378..612+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10167.1.1 ID=mRNA_C-tenellus_contig10167.1.1|Name=mRNA_C-tenellus_contig10167.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=235bp|location=Sequence derived from alignment at C-tenellus_contig10167:378..612+ (Choristocarpus tenellus KU2346)
ATGTGGGCAGCTGTGATGACCAGGCCAGATATCGCCGATGCAGTTCGTGA
GGTAGCTAAGTACAGTAGCAGCCCCAAGACTGCACATTGGTGTGCAGTTA
GGCGTGTTTTTGAATATTTGAATACATCCAAGTGTTGGATTGGTTTTTGA
TGATCTTGATACTGAGTGTGAGTTGAGTGTATATACTGATGCTAGTTGTA
CTGGGGACTGCAATGATCATAGATCAGAGACTGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10167:378..612+

>mRNA_C-tenellus_contig10167.1.1 ID=mRNA_C-tenellus_contig10167.1.1|Name=mRNA_C-tenellus_contig10167.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=150bp|location=Sequence derived from alignment at C-tenellus_contig10167:378..612+ (Choristocarpus tenellus KU2346)
ATGTGGGCAGCTGTGATGACCAGGCCAGATATCGCCGATGCAGTTCGTGA
GGTAGCTAAGTACAGTAGCAGCCCCAAGACTGCACATTGGTGTGCAGTTA
GGCGTGTTTTTGAATATTTGAATACATCCAAGTGTTGGATTGGTTTTTGA
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