mRNA_C-tenellus_contig10165.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10165.6.1
Unique NamemRNA_C-tenellus_contig10165.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10165.6.1 vs. uniprot
Match: A0A6H5LD19_9PHAE (MPN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD19_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 7.390e-28
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    1 MTLRSCTLNWQAFTTCCSHAMSTEKQEVMGLLLGRWEE-ENRELGARTAVTVDHAMILTRQGNYLTDKRKDRVEVGNLQLAEASSIAE 261
            M+L+ CTL+WQAFTTC SHAMSTEKQEVMGLLLGRW +   R+  +  AVTVDHAMILTR     TDKR+DRVEVG  QLAEA+ IAE
Sbjct:    1 MSLQRCTLSWQAFTTCASHAMSTEKQEVMGLLLGRWHDGTGRDGTSCPAVTVDHAMILTR-----TDKREDRVEVGYKQLAEAADIAE 83          
BLAST of mRNA_C-tenellus_contig10165.6.1 vs. uniprot
Match: D7FVU5_ECTSI (MPN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU5_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.090e-10
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   85 MGLLLGRWEE-ENRELGARTAVTVDHAMILTRQGNYLTDKRKDRVEVGNLQLAEASSIAE 261
            MGLLLGRW +   R+  +  AVTVDHAMILTR     TDKR+DRVEVG  QLAEA+ IAE
Sbjct:    1 MGLLLGRWHDGTGRDGTSCPAVTVDHAMILTR-----TDKREDRVEVGYKQLAEAADIAE 55          
BLAST of mRNA_C-tenellus_contig10165.6.1 vs. uniprot
Match: A0A7M5USG8_9CNID (MPN domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5USG8_9CNID)

HSP 1 Score: 62.4 bits (150), Expect = 1.750e-10
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    7 LRSCTLNWQAFTTCCSHAMSTEKQEVMGLLLGRWEEENRELGARTAVTVDHAMILTRQGNYLTDKRKDRVEVGNLQLAEASSIAE 261
            L+   ++  A   C SHA+STEK+E+MGLL+G  E+          V+  HA I+     Y  DKRKDRVE+   QL+EASS AE
Sbjct:   14 LQKVKISSDALQVCMSHALSTEKEEIMGLLIGEVED---------GVSHVHATIML----YRLDKRKDRVEISPEQLSEASSKAE 85          
BLAST of mRNA_C-tenellus_contig10165.6.1 vs. uniprot
Match: UPI00077A1311 (lys-63-specific deubiquitinase BRCC36-like n=2 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A1311)

HSP 1 Score: 60.5 bits (145), Expect = 4.790e-10
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 MTLRSCTLNWQAFTTCCSHAMSTEKQEVMGLLLGRWEEENRELGARTAVTVDHAMILTRQGNYLTDKRKDRVEVGNLQLAEASSIAEV 264
            M + +  +   A+  C +HA+STE++EVMGLL+G  E++N        V   +++I+ ++     DKRKDRVE+   QL++ASS AEV
Sbjct:   12 MAVEAVKIEADAYMVCLTHALSTEREEVMGLLIGEVEDDN--------VAHIYSVIMLQR----LDKRKDRVEISPEQLSDASSQAEV 87          
BLAST of mRNA_C-tenellus_contig10165.6.1 vs. uniprot
Match: F0XZA9_AURAN (MPN domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZA9_AURAN)

HSP 1 Score: 60.8 bits (146), Expect = 6.990e-10
Identity = 38/70 (54.29%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   52 SHAMSTEKQEVMGLLLGRWEEENRELGARTAVTVDHAMILTRQGNYLTDKRKDRVEVGNLQLAEASSIAE 261
            +HA+STE+QEVMGLL GRW+      GA  AV V+  M L R      DKR DRVEV   QLAEA+ +AE
Sbjct:   19 AHALSTERQEVMGLLFGRWD------GA--AVEVESVMPLPR-----LDKRSDRVEVTGPQLAEAAQVAE 75          
BLAST of mRNA_C-tenellus_contig10165.6.1 vs. uniprot
Match: A0A3B3ZMV5_9GOBI (Lys-63-specific deubiquitinase n=3 Tax=Oxudercinae TaxID=497678 RepID=A0A3B3ZMV5_9GOBI)

HSP 1 Score: 62.8 bits (151), Expect = 1.160e-9
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 MTLRSCTLNWQAFTTCCSHAMSTEKQEVMGLLLGRWEEENRELGARTAVTVDHAMILTRQGNYLTDKRKDRVEVGNLQLAEASSIAE 261
            M + +C L   AF  C SHA+STEK+EVMGL +G  E           V   H++I+ R+    +DKRKDRVE+   QL+ AS+ AE
Sbjct:   15 MAVSACHLESDAFLVCMSHALSTEKEEVMGLCIGELEPSR--------VVHVHSVIILRR----SDKRKDRVEISPEQLSAASTEAE 89          
BLAST of mRNA_C-tenellus_contig10165.6.1 vs. uniprot
Match: UPI00145B7F85 (lys-63-specific deubiquitinase BRCC36 n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=UPI00145B7F85)

HSP 1 Score: 62.8 bits (151), Expect = 1.730e-9
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 MTLRSCTLNWQAFTTCCSHAMSTEKQEVMGLLLGRWEEENRELGARTAVTVDHAMILTRQGNYLTDKRKDRVEVGNLQLAEASSIAE 261
            M + +C L   AF  C SHA+STEK+EVMGL +G  E           V   H++I+ R+    +DKRKDRVE+   QL+ AS+ AE
Sbjct:  132 MAVSACHLESDAFLVCMSHALSTEKEEVMGLCIGELEPSR--------VVHVHSVIILRR----SDKRKDRVEISPEQLSAASTEAE 206          
BLAST of mRNA_C-tenellus_contig10165.6.1 vs. uniprot
Match: A0A8J2S637_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S637_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.760e-9
Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 MTLRSCTLNWQAFTTCCSHAMSTEKQEVMGLLLGRWEEENRELGARTAVTVDHAMILTRQGNYLTDKRKDRVEVGNLQLAEASSIAE 261
            M+L  CTL  +      +HA+STEKQEVMGLL GRW+      G +  +   H +  T       D+R DRVEV   QLA+A+SIAE
Sbjct:    1 MSLAHCTLAKECAFCVVAHALSTEKQEVMGLLFGRWD------GPQAFIEEAHPLART-------DRRADRVEVKPEQLAKAASIAE 74          
BLAST of mRNA_C-tenellus_contig10165.6.1 vs. uniprot
Match: A0A6P9AQL4_PANGU (lys-63-specific deubiquitinase BRCC36-like n=1 Tax=Pantherophis guttatus TaxID=94885 RepID=A0A6P9AQL4_PANGU)

HSP 1 Score: 58.9 bits (141), Expect = 1.790e-9
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    1 MTLRSCTLNWQAFTTCCSHAMSTEKQEVMGLLLGRWEEENRELGARTAVTVDHAMILTRQGNYLTDKRKDRVEVGNLQLAEASSIAEV 264
            M +++  L   AF  C +HA+STEK+EVMGL +G       E+     V +   +IL R     +DKRKDRVE+   QL+ AS+ AE+
Sbjct:    1 MAVQAAHLEADAFLVCLNHALSTEKEEVMGLCIG-------EVDTSRIVHIHSVIILRR-----SDKRKDRVEISPEQLSAASTEAEI 76          
BLAST of mRNA_C-tenellus_contig10165.6.1 vs. uniprot
Match: UPI0013F2751B (lys-63-specific deubiquitinase BRCC36 n=1 Tax=Hylobates moloch TaxID=81572 RepID=UPI0013F2751B)

HSP 1 Score: 61.2 bits (147), Expect = 1.800e-9
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   22 LNWQAFTTCCSHAMSTEKQEVMGLLLGRWEEENRELGARTAVTVDHAMILTRQGNYLTDKRKDRVEVGNLQLAEASSIAE 261
            L   AF  C +HA+STEK+EVMGL +G   ++ R    R  +   H++I+ R+    +DKRKDRVE+   QL+ AS+ AE
Sbjct:   14 LESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRVDAVR--IVHIHSVIILRR----SDKRKDRVEISPEQLSAASTEAE 87          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10165.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LD19_9PHAE7.390e-2870.45MPN domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FVU5_ECTSI1.090e-1065.00MPN domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7M5USG8_9CNID1.750e-1044.71MPN domain-containing protein n=1 Tax=Clytia hemis... [more]
UPI00077A13114.790e-1039.77lys-63-specific deubiquitinase BRCC36-like n=2 Tax... [more]
F0XZA9_AURAN6.990e-1054.29MPN domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A3B3ZMV5_9GOBI1.160e-943.68Lys-63-specific deubiquitinase n=3 Tax=Oxudercinae... [more]
UPI00145B7F851.730e-943.68lys-63-specific deubiquitinase BRCC36 n=1 Tax=Peri... [more]
A0A8J2S637_9STRA1.760e-944.83Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6P9AQL4_PANGU1.790e-940.91lys-63-specific deubiquitinase BRCC36-like n=1 Tax... [more]
UPI0013F2751B1.800e-943.75lys-63-specific deubiquitinase BRCC36 n=1 Tax=Hylo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10165contigC-tenellus_contig10165:4080..5331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVU5
PFAMsJAB
Model size276
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00901,ko:K11864
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko03440,ko04070,ko04072,ko04621,ko05231,map00561,map00564,map01100,map01110,map03440,map04070,map04072,map04621,map05231
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.79e-11
EggNOG OGsCOG1310@1|root,KOG1555@2759|Eukaryota
EC2.7.1.107
Descriptionmetallopeptidase activity
Cds size276
COG categoryADK
BRITEko00000,ko00001,ko01000,ko01002,ko03036,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789118.726654-CDS-C-tenellus_contig10165:4079..41601680789118.726654-CDS-C-tenellus_contig10165:4079..4160Choristocarpus tenellus KU2346CDSC-tenellus_contig10165 4080..4160 +
1680789118.737741-CDS-C-tenellus_contig10165:4717..48271680789118.737741-CDS-C-tenellus_contig10165:4717..4827Choristocarpus tenellus KU2346CDSC-tenellus_contig10165 4718..4827 +
1680789118.7514746-CDS-C-tenellus_contig10165:5246..53311680789118.7514746-CDS-C-tenellus_contig10165:5246..5331Choristocarpus tenellus KU2346CDSC-tenellus_contig10165 5247..5331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10165.6.1prot_C-tenellus_contig10165.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10165 4080..5331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10165.6.1

>prot_C-tenellus_contig10165.6.1 ID=prot_C-tenellus_contig10165.6.1|Name=mRNA_C-tenellus_contig10165.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=92bp
MTLRSCTLNWQAFTTCCSHAMSTEKQEVMGLLLGRWEEENRELGARTAVT
VDHAMILTRQGNYLTDKRKDRVEVGNLQLAEASSIAEVPPT*
back to top

mRNA from alignment at C-tenellus_contig10165:4080..5331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10165.6.1 ID=mRNA_C-tenellus_contig10165.6.1|Name=mRNA_C-tenellus_contig10165.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1252bp|location=Sequence derived from alignment at C-tenellus_contig10165:4080..5331+ (Choristocarpus tenellus KU2346)
ATGACTCTTCGAAGCTGCACCCTGAACTGGCAGGCATTCACCACGTGTTG TAGTCATGCTATGTCCACGGAAAAGCAGGAGGTTAGCACTCCACACACGG ATCATACGATAAGAAAAATATTTTTACAATTAAGCCAAGATGGTCACCTT CCCTTGGCATCTATTACTGGTCAAGAACGGTATAGGTCTCGTTTGTCCCA TTCTTTGCCTTTTGCCCACGTCGACCCTGATGGAATGATCCCTGGCCTGT ACATGGCGGTAGACATTTGTACACAGTTTTAGAAGATAGAGAGGTTGACC CCAACGATAAAACCAGGTCGCACAATGTTGACGGGAGTCACACGAGCTAG ATGCTTCAATCCAAGCGAGGAAGATATCCCCCATGTAGCCCATCAGAGAT GGCACAGAGTCCTCCTCTTTCTTTGCCATTTCTCTTTGCTCATCCCCCTA CCCATCCATGGGTCATATGACCAGCGTGAAATTAGTGGTATCCTCTTGAT GGTTCCGAACCTGCCACTGGTCGCCAACAGGAGAGACTCTTCTTATCAAG AAGGCGGAATGCAAGCCTTGGAAGCCCATTCACCAAGATGGCTGTTCCCT CCTCTTCGCAACTTGGTTTATGCCTGTACCCACCTTAGGTAATGGGGCTA CTACTGGGGCGTTGGGAGGAGGAGAACAGGGAACTAGGAGCTAGAACTGC AGTCACTGTGGATCACGCCATGATACTGACCAGGCAAGGGAATTATTTGT CTTGGTGAGGGAATGGTGTAATGTGAGCTGAGTGTAGATTGAGGCTTGAA TTCCTTTGACTTGTACTGCCATAGGGGTAGAGATACGCAGCAGCATACCT TATCCTTATTGGCAAAGACACTCGCGTTTGACTGTGTAACCCTACGTTAA CTGGGTGTGCTTCATGTTGTGGAGAATGCTCTACTCCGCAGACCAATGAA GATTTTCAATTGCAGATTGTCGATCGCGACACAAACAGCTCAATCATTTG TTTTCATTGCTTGTGTGGTATGAAAATTCACTGTAGCTCAAGCGAACATT TTCATGTGTACGATGTACTCTCTCTTTGTCATCATCCCCTCCTATACAAC CATTCGACATCAGTCGAATGCTCTTGTAATGGTACTGAGGGTAGTTAACT CTAACCTCTGTTGGCAGGACGGACAAGAGGAAGGATCGGGTGGAGGTGGG AAATTTGCAGCTTGCAGAGGCGTCAAGTATTGCGGAGGTACCCCCCACCT AA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10165:4080..5331+

>mRNA_C-tenellus_contig10165.6.1 ID=mRNA_C-tenellus_contig10165.6.1|Name=mRNA_C-tenellus_contig10165.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=276bp|location=Sequence derived from alignment at C-tenellus_contig10165:4080..5331+ (Choristocarpus tenellus KU2346)
ATGACTCTTCGAAGCTGCACCCTGAACTGGCAGGCATTCACCACGTGTTG
TAGTCATGCTATGTCCACGGAAAAGCAGGAGGTAATGGGGCTACTACTGG
GGCGTTGGGAGGAGGAGAACAGGGAACTAGGAGCTAGAACTGCAGTCACT
GTGGATCACGCCATGATACTGACCAGGCAAGGGAATTATTTGACGGACAA
GAGGAAGGATCGGGTGGAGGTGGGAAATTTGCAGCTTGCAGAGGCGTCAA
GTATTGCGGAGGTACCCCCCACCTAA
back to top