mRNA_C-tenellus_contig10163.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10163.1.1
Unique NamemRNA_C-tenellus_contig10163.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: D8LBL7_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL7_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 4.480e-57
Identity = 89/104 (85.58%), Postives = 99/104 (95.19%), Query Frame = 1 
Query:    7 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAAGSSGSTRRR 318
            +V  RYASLFFVACID+DDNELITLE+IHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLR+C+QMD+LME+AKE+AA G+ G +RRR
Sbjct:   57 IVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDDLMEEAKEEAANGNQGPSRRR 160
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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: A0A835Z7C9_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C9_9STRA)

HSP 1 Score: 169 bits (427), Expect = 7.630e-52
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 1 
Query:    7 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAAGSSGSTRR 315
            +V  RYASLFFVAC+D+DDNELITLEQIHL+VEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLR+C Q+D+LMED ++D      GS+RR
Sbjct:   57 IVYKRYASLFFVACVDRDDNELITLEQIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCGQIDDLMEDVRDD------GSSRR 153
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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: A0A7S2SD76_9STRA (AP complex subunit sigma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD76_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.970e-51
Identity = 79/104 (75.96%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:    7 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAAGSSGSTRRR 318
            V+  RYASLFFVAC+DK+DNEL+TLE IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFI GELQESSKKEVL +CAQMDE+M+++K++  +G++ S  RR
Sbjct:   71 VIYKRYASLFFVACVDKEDNELVTLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFINGELQESSKKEVLSVCAQMDEMMDESKDEGTSGATKSGSRR 174
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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: A0A7S4A8C4_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8C4_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.570e-50
Identity = 80/104 (76.92%), Postives = 93/104 (89.42%), Query Frame = 1 
Query:    7 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKED-AAAGSSGSTRR 315
            ++  RYASLFF+ C+D +DNELITLE IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDE+F+GGEL ESSKKEVL +CAQMDELME+ +ED AA+GSSG  R+
Sbjct:   57 IIYKRYASLFFIVCVDAEDNELITLEMIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDEIFVGGELCESSKKEVLSVCAQMDELMEEREEDKAASGSSGRVRK 160
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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: A0A7S2XUT6_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUT6_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.870e-48
Identity = 76/94 (80.85%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:    7 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAA 288
            +V  RYASLFFV CIDK DNELITLE IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDELFI GELQES K+EVLR+C QMD++ME+ KED +
Sbjct:   57 IVYKRYASLFFVVCIDKGDNELITLEMIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFIAGELQESGKREVLRICGQMDDMMEEGKEDVS 150
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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: A0A7S3LZF2_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZF2_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.800e-48
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 1 
Query:    7 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKED 282
            V+  RYASLFFVAC+DK+DNELI LEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGG LQE+SK EVLR+CA MDE+M+++KE+
Sbjct:   74 VIYKRYASLFFVACVDKNDNELIVLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQETSKVEVLRICAAMDEMMDESKEE 165
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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: W7T3W8_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3W8_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.260e-47
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    7 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAA 291
            V+  RYASLFF+A +D  DNELITLE IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFIGG LQESSK EVLR+C+QMDELME+ K+D  A
Sbjct:   57 VIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDDNLA 151
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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: A0A812YG65_SYMMI (AP complex subunit sigma (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YG65_SYMMI)

HSP 1 Score: 157 bits (398), Expect = 2.860e-47
Identity = 73/92 (79.35%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:    7 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKED 282
            VV  RYASL+F+AC+DK+DNELITLE+IHLFVEVLDRYFGNVCELDIIFNFHKAYYI+DELFIGG LQE+SK EVLR+CA MDE+M+++K++
Sbjct:   56 VVYKRYASLYFIACVDKEDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYIMDELFIGGYLQETSKAEVLRICAAMDEMMDESKDE 147
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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: F0WA41_9STRA (AP complex subunit sigma n=2 Tax=Albugo TaxID=65356 RepID=F0WA41_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.090e-45
Identity = 73/102 (71.57%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:    7 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAAGSSGSTR 312
            +V  RYASLFF+ACI KD+NELITLE IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDELF+GG LQESSK+EVLR+C Q ++ ++++KE+  A     TR
Sbjct:   57 IVYKRYASLFFIACISKDENELITLEAIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFLGGYLQESSKREVLRICTQQEDYVDESKEEGFARPRQGTR 158
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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: M4BAW2_HYAAE (AP complex subunit sigma n=31 Tax=Peronosporaceae TaxID=4777 RepID=M4BAW2_HYAAE)

HSP 1 Score: 152 bits (384), Expect = 3.100e-45
Identity = 72/102 (70.59%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:    7 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAAGSSGSTR 312
            ++  RYASL+F+ACI KD+NELITLE IHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGG  QESSKKE+LR+C Q ++ M+++KE+        TR
Sbjct:   57 IIYKRYASLYFIACISKDENELITLEAIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGYQQESSKKEILRICTQQEDYMDESKEEGFVRPRTGTR 158
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBL7_ECTSI4.480e-5785.58AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835Z7C9_9STRA7.630e-5280.58AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2SD76_9STRA2.970e-5175.96AP complex subunit sigma n=1 Tax=Rhizochromulina m... [more]
A0A7S4A8C4_9STRA1.570e-5076.92AP complex subunit sigma n=1 Tax=Pelagomonas calce... [more]
A0A7S2XUT6_9STRA1.870e-4880.85AP complex subunit sigma n=1 Tax=Fibrocapsa japoni... [more]
A0A7S3LZF2_9STRA3.800e-4882.61AP complex subunit sigma n=1 Tax=Spumella elongata... [more]
W7T3W8_9STRA1.260e-4780.00AP complex subunit sigma n=2 Tax=Monodopsidaceae T... [more]
A0A812YG65_SYMMI2.860e-4779.35AP complex subunit sigma (Fragment) n=1 Tax=Symbio... [more]
F0WA41_9STRA1.090e-4571.57AP complex subunit sigma n=2 Tax=Albugo TaxID=6535... [more]
M4BAW2_HYAAE3.100e-4570.59AP complex subunit sigma n=31 Tax=Peronosporaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10163contigC-tenellus_contig10163:44..934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBL7
Preferred nameAP1S2
PFAMsClat_adaptor_s
Model size321
Max annot lvl2759|Eukaryota
KEGG koko:K12394,ko:K12395
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000323,GO:0000902,GO:0000904,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0005886,GO:0005905,GO:0006605,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006897,GO:0006898,GO:0006928,GO:0006935,GO:0007034,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008104,GO:0008150,GO:0008306,GO:0008542,GO:0008565,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0012505,GO:0012506,GO:0012510,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019882,GO:0019884,GO:0019886,GO:0022008,GO:0030030,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030154,GO:0030182,GO:0030276,GO:0030424,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031175,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032588,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033267,GO:0034613,GO:0036465,GO:0040011,GO:0042051,GO:0042147,GO:0042221,GO:0042330,GO:0042461,GO:0042462,GO:0042886,GO:0042995,GO:0043005,GO:0043195,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043679,GO:0044306,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045176,GO:0045184,GO:0045202,GO:0045334,GO:0045444,GO:0046530,GO:0046907,GO:0048002,GO:0048193,GO:0048468,GO:0048475,GO:0048513,GO:0048592,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050690,GO:0050877,GO:0050885,GO:0050890,GO:0050896,GO:0050905,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060612,GO:0061448,GO:0061564,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090596,GO:0097458,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099504,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0150034
Exons2
Evalue7.34e-58
EggNOG OGsCOG5030@1|root,KOG0934@2759|Eukaryota
Descriptionprotein transport
Cds size321
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789118.6100848-CDS-C-tenellus_contig10163:43..2531680789118.6100848-CDS-C-tenellus_contig10163:43..253Choristocarpus tenellus KU2346CDSC-tenellus_contig10163 44..253 +
1680789118.622088-CDS-C-tenellus_contig10163:823..9341680789118.622088-CDS-C-tenellus_contig10163:823..934Choristocarpus tenellus KU2346CDSC-tenellus_contig10163 824..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10163.1.1prot_C-tenellus_contig10163.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10163 44..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10163.1.1

>prot_C-tenellus_contig10163.1.1 ID=prot_C-tenellus_contig10163.1.1|Name=mRNA_C-tenellus_contig10163.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=107bp
MFVVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDII
FNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAAGSS
GSTRRR*
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mRNA from alignment at C-tenellus_contig10163:44..934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10163.1.1 ID=mRNA_C-tenellus_contig10163.1.1|Name=mRNA_C-tenellus_contig10163.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=891bp|location=Sequence derived from alignment at C-tenellus_contig10163:44..934+ (Choristocarpus tenellus KU2346)
ATGTTTGTGGTCACTGGAAGGTATGCATCTCTCTTCTTTGTTGCATGCAT
AGACAAGGACGACAACGAGCTCATTACCCTGGAGCAAATTCACCTCTTTG
TTGAGGTGCTGGATAGATACTTCGGCAATGTCTGCGAGCTAGACATCATA
TTCAATTTCCACAAGGCGTATTACATCCTTGATGAGCTCTTCATTGGTGG
AGAATTGCAGGTAGTGTGGCGATTGCATGGGTCATAGTGTGAGAAGGTGT
GCAATGGATTGTGGGCGAGAAGAGGGGCAAAGAGGGGTTGAATGTGGAAG
AATTGTTGCTGTGTGTTGTGGTCCTGAGTCCTGGCAAGAGATAGGTGTAT
ACGGAACTATCTGGTAATCTGTGGTGGGTATCCTTGCTACGTTCCAATTT
GGCTGTGATTTGCTTTGGAAAGGATATCTTTCCTATTGTACTCTTACGTA
TTTTTTGGCTTCAGAATAAGAATAGAGACAAGACATACACAAGGTTGATC
GAACGGCGGTGGTCCTGTTCTAATTGAACCCACCAGTTCAGACATCAGCA
GCACCAGCAGGAAGTGAAGCGTTACTGTGCAGCTTTGATCTTTCCCCTGC
GCCAACCGCCCCCTGAGGTGACAAGCAGGGTTACAACCATGTGAAAGGCA
CGCCCTCCTGATTCCCCAGTTTACCCCACCCGAATCTTGCCTTGAAAGTA
TCATGCATCTTCCTCCCTCCCCTACCTCCCCCGCCCCTCTTCAAACTCGT
TGATGGGAATGAATGGTGTGTTGCCTGCAGGAGAGCTCAAAAAAGGAAGT
CCTTCGCCTGTGTGCACAAATGGATGAGCTGATGGAGGATGCCAAGGAGG
ATGCAGCTGCAGGCAGCTCAGGTTCCACGCGCCGTCGCTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10163:44..934+

>mRNA_C-tenellus_contig10163.1.1 ID=mRNA_C-tenellus_contig10163.1.1|Name=mRNA_C-tenellus_contig10163.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=321bp|location=Sequence derived from alignment at C-tenellus_contig10163:44..934+ (Choristocarpus tenellus KU2346)
ATGTTTGTGGTCACTGGAAGGTATGCATCTCTCTTCTTTGTTGCATGCAT
AGACAAGGACGACAACGAGCTCATTACCCTGGAGCAAATTCACCTCTTTG
TTGAGGTGCTGGATAGATACTTCGGCAATGTCTGCGAGCTAGACATCATA
TTCAATTTCCACAAGGCGTATTACATCCTTGATGAGCTCTTCATTGGTGG
AGAATTGCAGGAGAGCTCAAAAAAGGAAGTCCTTCGCCTGTGTGCACAAA
TGGATGAGCTGATGGAGGATGCCAAGGAGGATGCAGCTGCAGGCAGCTCA
GGTTCCACGCGCCGTCGCTGA
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