prot_C-tenellus_contig10163.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig10163.1.1
Unique Name	prot_C-tenellus_contig10163.1.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	107

Homology

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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: D8LBL7_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL7_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 4.480e-57
Identity = 89/104 (85.58%), Postives = 99/104 (95.19%), Query Frame = 0

Query:    3 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAAGSSGSTRRR 106
            +V  RYASLFFVACID+DDNELITLE+IHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLR+C+QMD+LME+AKE+AA G+ G +RRR
Sbjct:   57 IVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDDLMEEAKEEAANGNQGPSRRR 160

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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: A0A835Z7C9_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C9_9STRA)

HSP 1 Score: 169 bits (427), Expect = 7.630e-52
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 0

Query:    3 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAAGSSGSTRR 105
            +V  RYASLFFVAC+D+DDNELITLEQIHL+VEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLR+C Q+D+LMED ++D      GS+RR
Sbjct:   57 IVYKRYASLFFVACVDRDDNELITLEQIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCGQIDDLMEDVRDD------GSSRR 153

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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: A0A7S2SD76_9STRA (AP complex subunit sigma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD76_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.970e-51
Identity = 79/104 (75.96%), Postives = 94/104 (90.38%), Query Frame = 0

Query:    3 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAAGSSGSTRRR 106
            V+  RYASLFFVAC+DK+DNEL+TLE IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFI GELQESSKKEVL +CAQMDE+M+++K++  +G++ S  RR
Sbjct:   71 VIYKRYASLFFVACVDKEDNELVTLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFINGELQESSKKEVLSVCAQMDEMMDESKDEGTSGATKSGSRR 174

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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: A0A7S4A8C4_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8C4_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.570e-50
Identity = 80/104 (76.92%), Postives = 93/104 (89.42%), Query Frame = 0

Query:    3 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKED-AAAGSSGSTRR 105
            ++  RYASLFF+ C+D +DNELITLE IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDE+F+GGEL ESSKKEVL +CAQMDELME+ +ED AA+GSSG  R+
Sbjct:   57 IIYKRYASLFFIVCVDAEDNELITLEMIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDEIFVGGELCESSKKEVLSVCAQMDELMEEREEDKAASGSSGRVRK 160

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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: A0A7S2XUT6_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUT6_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.870e-48
Identity = 76/94 (80.85%), Postives = 84/94 (89.36%), Query Frame = 0

Query:    3 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAA 96
            +V  RYASLFFV CIDK DNELITLE IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDELFI GELQES K+EVLR+C QMD++ME+ KED +
Sbjct:   57 IVYKRYASLFFVVCIDKGDNELITLEMIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFIAGELQESGKREVLRICGQMDDMMEEGKEDVS 150

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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: A0A7S3LZF2_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZF2_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.800e-48
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 0

Query:    3 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKED 94
            V+  RYASLFFVAC+DK+DNELI LEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGG LQE+SK EVLR+CA MDE+M+++KE+
Sbjct:   74 VIYKRYASLFFVACVDKNDNELIVLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQETSKVEVLRICAAMDEMMDESKEE 165

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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: W7T3W8_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3W8_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.260e-47
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 0

Query:    3 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAA 97
            V+  RYASLFF+A +D  DNELITLE IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFIGG LQESSK EVLR+C+QMDELME+ K+D  A
Sbjct:   57 VIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDDNLA 151

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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: A0A812YG65_SYMMI (AP complex subunit sigma (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YG65_SYMMI)

HSP 1 Score: 157 bits (398), Expect = 2.860e-47
Identity = 73/92 (79.35%), Postives = 87/92 (94.57%), Query Frame = 0

Query:    3 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKED 94
            VV  RYASL+F+AC+DK+DNELITLE+IHLFVEVLDRYFGNVCELDIIFNFHKAYYI+DELFIGG LQE+SK EVLR+CA MDE+M+++K++
Sbjct:   56 VVYKRYASLYFIACVDKEDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYIMDELFIGGYLQETSKAEVLRICAAMDEMMDESKDE 147

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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: F0WA41_9STRA (AP complex subunit sigma n=2 Tax=Albugo TaxID=65356 RepID=F0WA41_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.090e-45
Identity = 73/102 (71.57%), Postives = 87/102 (85.29%), Query Frame = 0

Query:    3 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAAGSSGSTR 104
            +V  RYASLFF+ACI KD+NELITLE IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDELF+GG LQESSK+EVLR+C Q ++ ++++KE+  A     TR
Sbjct:   57 IVYKRYASLFFIACISKDENELITLEAIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFLGGYLQESSKREVLRICTQQEDYVDESKEEGFARPRQGTR 158

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BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Match: M4BAW2_HYAAE (AP complex subunit sigma n=31 Tax=Peronosporaceae TaxID=4777 RepID=M4BAW2_HYAAE)

HSP 1 Score: 152 bits (384), Expect = 3.100e-45
Identity = 72/102 (70.59%), Postives = 85/102 (83.33%), Query Frame = 0

Query:    3 VVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAAGSSGSTR 104
            ++  RYASL+F+ACI KD+NELITLE IHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGG  QESSKKE+LR+C Q ++ M+++KE+        TR
Sbjct:   57 IIYKRYASLYFIACISKDENELITLEAIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGYQQESSKKEILRICTQQEDYMDESKEEGFVRPRTGTR 158

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig10163.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LBL7_ECTSI	4.480e-57	85.58	AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=...	[more]
A0A835Z7C9_9STRA	7.630e-52	80.58	AP complex subunit sigma n=1 Tax=Tribonema minus T...	[more]
A0A7S2SD76_9STRA	2.970e-51	75.96	AP complex subunit sigma n=1 Tax=Rhizochromulina m...	[more]
A0A7S4A8C4_9STRA	1.570e-50	76.92	AP complex subunit sigma n=1 Tax=Pelagomonas calce...	[more]
A0A7S2XUT6_9STRA	1.870e-48	80.85	AP complex subunit sigma n=1 Tax=Fibrocapsa japoni...	[more]
A0A7S3LZF2_9STRA	3.800e-48	82.61	AP complex subunit sigma n=1 Tax=Spumella elongata...	[more]
W7T3W8_9STRA	1.260e-47	80.00	AP complex subunit sigma n=2 Tax=Monodopsidaceae T...	[more]
A0A812YG65_SYMMI	2.860e-47	79.35	AP complex subunit sigma (Fragment) n=1 Tax=Symbio...	[more]
F0WA41_9STRA	1.090e-45	71.57	AP complex subunit sigma n=2 Tax=Albugo TaxID=6535...	[more]
M4BAW2_HYAAE	3.100e-45	70.59	AP complex subunit sigma n=31 Tax=Peronosporaceae ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..94
None	No IPR available	GENE3D	3.30.450.60		coord: 1..99 e-value: 2.0E-39 score: 136.9
None	No IPR available	PANTHER	PTHR11753:SF49	AP-1 COMPLEX SUBUNIT SIGMA-2	coord: 3..97
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 3..86 e-value: 6.9E-32 score: 110.3
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 1..98 e-value: 2.2E-40 score: 135.9
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 3..97
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 3..85

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig10163	contig	C-tenellus_contig10163:44..934 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig10163.1.1	mRNA_C-tenellus_contig10163.1.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig10163 44..934 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig10163.1.1 ID=prot_C-tenellus_contig10163.1.1|Name=mRNA_C-tenellus_contig10163.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=107bp
MFVVTGRYASLFFVACIDKDDNELITLEQIHLFVEVLDRYFGNVCELDII
FNFHKAYYILDELFIGGELQESSKKEVLRLCAQMDELMEDAKEDAAAGSS
GSTRRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022775	AP_mu_sigma_su
IPR016635	AP_complex_ssu
IPR011012	Longin-like_dom_sf