mRNA_C-tenellus_contig1016.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1016.2.1
Unique NamemRNA_C-tenellus_contig1016.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1016.2.1 vs. uniprot
Match: D8LFI8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI8_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.750e-50
Identity = 138/389 (35.48%), Postives = 208/389 (53.47%), Query Frame = 1 
Query:  223 LPHFVILEVISYLDSRDIIRARSTARAFRFDLLPLVTSLSVTVGEGFPSVHNMELYQSIAKVHLEGMHDVVREMMK-VMAKSSGLR-----QVSVMGSKHGCSKACFGGGCALTILGRPLTELRWRNVCIDIPENVSILAWQTLYTLILVNAKIDDMALVNLMRSIPEKTRLPLQHLDLSFNRI--VDGILSLSDVLREGAFPGLKSLELSGNTISDQGAMQLTTSLCRGACPNLRSLGMLVTLDGNETINFLSAEITRSGHGLQKLNRFVIGDRGLWGKRPYV--ELVG-ALSSGGMPRLQHFHALGDISTTEAGSLLRNLISGACPKLEVVKVEHTEFALTGNPGL-PEEVVRGMYDLVNSNAVPHLQQLHVIGMHLADGALEKDPE 1353
            LPH V+LE++S+LD+R I+  R  +RAF  D   LV +L   +G+  PS   ++L+  + +V+L+G  D+V  ++  +    S LR       SV   +   SK      CAL     PLTEL    V I+ P  + + AW+TL  L++ +A + D +L +L +SIPE   LPL+HLDLS N     D +L  +D LR  +FP L+ LELS   I      ++  +L  GACP LR+L + +    N  +  L   +   GHGL  L +   G R + G       E VG AL++GG+P+L   H  GD+   +   +L  L  GACP L +VK+E +  +  G      E+  + M++LV S  +PHL+++H +GM L +G +EK  E
Sbjct:   44 LPHHVVLEIVSFLDTRSIVSGRCLSRAFSSDAPALVKTLDFHMGQQSPSAETIKLFPEVRQVNLDGNRDLVHAVVAGLRGWGSSLRLDVSLHDSVPQKEEPLSKTATTDLCAL-----PLTELDMMEVVIEFPPLLPMNAWRTLQRLVIRDAFLGDESLESLSKSIPEGA-LPLRHLDLSRNLFGGYDTVLPFADALR--SFPDLEWLELSACRICRGSGDRIVRTLLEGACPKLRTLDLSLNFFTNGLLASLCEGLGAPGHGLLNLRKLGFGSR-VTGDEMITCFEKVGKALAAGGLPKLDFLHLQGDVGPRQVSPVLSRLRGGACPMLAMVKLERSLHSTLGEDEFGAEDAAQSMFNLVISGHIPHLREVHALGMALNEG-MEKANE 422
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1016.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFI8_ECTSI1.750e-5035.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1016contigC-tenellus_contig1016:5983..7676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo141425
Model size1694
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000959
EggNOG OGs2ECKN@1|root,2SIEV@2759|Eukaryota,3Q70U@4776|Peronosporales
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-04_002030.1
Cds size1248
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789118.2516844-UTR-C-tenellus_contig1016:5982..62451680789118.2516844-UTR-C-tenellus_contig1016:5982..6245Choristocarpus tenellus KU2346UTRC-tenellus_contig1016 5983..6245 -
1680789118.2733235-UTR-C-tenellus_contig1016:7493..76761680789118.2733235-UTR-C-tenellus_contig1016:7493..7676Choristocarpus tenellus KU2346UTRC-tenellus_contig1016 7494..7676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789118.2645624-CDS-C-tenellus_contig1016:6245..74931680789118.2645624-CDS-C-tenellus_contig1016:6245..7493Choristocarpus tenellus KU2346CDSC-tenellus_contig1016 6246..7493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1016.2.1prot_C-tenellus_contig1016.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1016 6246..7493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1016.2.1

>prot_C-tenellus_contig1016.2.1 ID=prot_C-tenellus_contig1016.2.1|Name=mRNA_C-tenellus_contig1016.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=416bp
MFGRVCQEADVLTLPHFVILEVISYLDSRDIIRARSTARAFRFDLLPLVT
SLSVTVGEGFPSVHNMELYQSIAKVHLEGMHDVVREMMKVMAKSSGLRQV
SVMGSKHGCSKACFGGGCALTILGRPLTELRWRNVCIDIPENVSILAWQT
LYTLILVNAKIDDMALVNLMRSIPEKTRLPLQHLDLSFNRIVDGILSLSD
VLREGAFPGLKSLELSGNTISDQGAMQLTTSLCRGACPNLRSLGMLVTLD
GNETINFLSAEITRSGHGLQKLNRFVIGDRGLWGKRPYVELVGALSSGGM
PRLQHFHALGDISTTEAGSLLRNLISGACPKLEVVKVEHTEFALTGNPGL
PEEVVRGMYDLVNSNAVPHLQQLHVIGMHLADGALEKDPEILSNPCTSLG
RLISFASRKGVRIFI*
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mRNA from alignment at C-tenellus_contig1016:5983..7676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1016.2.1 ID=mRNA_C-tenellus_contig1016.2.1|Name=mRNA_C-tenellus_contig1016.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1694bp|location=Sequence derived from alignment at C-tenellus_contig1016:5983..7676- (Choristocarpus tenellus KU2346)
CTTCTGTGACGACAACACTTCATTAAATGCAATTGGGGCCACTTCACATT
CTTTTCAAAGGACTTAACCATTTCTTCTGCTGGGAAGCTACAAGGAAATA
TCCGCGTTTGCAACCAATAGAGCTTTCATATCGGAGACGAAGGGGGCAAG
GTTATCCCCGTCTTGAAGAAGTCTCGGCACACGATGTTTGGGAGAGTTTG
CCAAGAGGCAGATGTTTTGACCCTCCCCCACTTCGTCATTCTGGAGGTTA
TTTCCTACCTCGATTCACGAGATATCATCCGTGCCAGATCCACAGCAAGG
GCCTTTCGGTTTGATCTGCTGCCCCTTGTCACGTCTCTGTCGGTGACTGT
TGGCGAGGGATTCCCATCAGTCCACAACATGGAATTGTACCAGTCTATCG
CAAAGGTTCATCTGGAGGGAATGCACGACGTCGTACGGGAGATGATGAAA
GTGATGGCTAAGAGCTCGGGGTTACGCCAAGTATCTGTTATGGGTTCCAA
ACATGGTTGTAGCAAGGCCTGTTTTGGGGGGGGGTGCGCGTTGACTATCT
TGGGACGCCCGCTCACTGAGCTTAGGTGGCGCAACGTGTGTATAGATATC
CCCGAGAATGTCTCCATTTTGGCATGGCAAACCCTTTACACATTGATACT
TGTCAACGCCAAAATTGATGACATGGCTCTTGTGAACCTGATGCGATCCA
TACCTGAGAAAACAAGGTTGCCGCTTCAACACCTTGACTTGTCATTCAAT
CGCATCGTTGATGGCATCCTTTCCCTGTCTGATGTTCTTAGGGAGGGAGC
TTTCCCAGGGTTAAAATCCTTGGAGTTATCTGGGAACACAATCTCGGACC
AGGGGGCAATGCAACTCACGACTTCATTATGTCGTGGGGCCTGCCCCAAT
CTAAGAAGCTTAGGCATGCTTGTCACCCTCGACGGCAATGAAACCATAAA
CTTCCTGTCAGCGGAAATTACCCGAAGTGGTCACGGGCTTCAAAAGCTGA
ACAGATTCGTCATTGGGGACCGTGGCCTCTGGGGCAAACGCCCCTATGTG
GAATTGGTGGGAGCTTTGTCTTCTGGTGGGATGCCCCGCCTGCAACATTT
TCATGCCCTAGGTGACATAAGCACGACGGAGGCAGGGTCACTGCTGAGGA
ACTTGATATCTGGTGCTTGCCCTAAACTTGAGGTAGTCAAGGTGGAGCAC
ACAGAGTTTGCCTTAACGGGCAATCCAGGGCTACCAGAGGAAGTTGTCAG
GGGCATGTATGACCTCGTCAACAGCAATGCTGTGCCACACTTGCAACAAC
TGCACGTCATTGGGATGCATCTGGCAGATGGGGCACTGGAAAAAGATCCC
GAAATCTTATCTAACCCATGCACGAGCTTGGGTAGGCTCATCTCCTTTGC
CTCCAGGAAGGGTGTTAGGATTTTCATTTGAGAATATTGAGTTAAGCTGT
TACCCTGTATTGACATTATTGATGGGGAACATTTGCTTTTTTGTAGTTTT
CGTAACTTGGACACAATTGAATTTTTATTTCTGTACATCCTTCTTGCCAC
AGCTCAACATGAACTGTTGTTATATCTATGCTGCCTTTGAAGCGAGACTA
TGCAACTTATGTCAGGGCGTATCCTTTTATTCTTTGCAATAGAGTTGTGT
ATATATTTTATAATGATTATACGACTGATAAACAATATGCTGGC
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Coding sequence (CDS) from alignment at C-tenellus_contig1016:5983..7676-

>mRNA_C-tenellus_contig1016.2.1 ID=mRNA_C-tenellus_contig1016.2.1|Name=mRNA_C-tenellus_contig1016.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1248bp|location=Sequence derived from alignment at C-tenellus_contig1016:5983..7676- (Choristocarpus tenellus KU2346)
ATGTTTGGGAGAGTTTGCCAAGAGGCAGATGTTTTGACCCTCCCCCACTT
CGTCATTCTGGAGGTTATTTCCTACCTCGATTCACGAGATATCATCCGTG
CCAGATCCACAGCAAGGGCCTTTCGGTTTGATCTGCTGCCCCTTGTCACG
TCTCTGTCGGTGACTGTTGGCGAGGGATTCCCATCAGTCCACAACATGGA
ATTGTACCAGTCTATCGCAAAGGTTCATCTGGAGGGAATGCACGACGTCG
TACGGGAGATGATGAAAGTGATGGCTAAGAGCTCGGGGTTACGCCAAGTA
TCTGTTATGGGTTCCAAACATGGTTGTAGCAAGGCCTGTTTTGGGGGGGG
GTGCGCGTTGACTATCTTGGGACGCCCGCTCACTGAGCTTAGGTGGCGCA
ACGTGTGTATAGATATCCCCGAGAATGTCTCCATTTTGGCATGGCAAACC
CTTTACACATTGATACTTGTCAACGCCAAAATTGATGACATGGCTCTTGT
GAACCTGATGCGATCCATACCTGAGAAAACAAGGTTGCCGCTTCAACACC
TTGACTTGTCATTCAATCGCATCGTTGATGGCATCCTTTCCCTGTCTGAT
GTTCTTAGGGAGGGAGCTTTCCCAGGGTTAAAATCCTTGGAGTTATCTGG
GAACACAATCTCGGACCAGGGGGCAATGCAACTCACGACTTCATTATGTC
GTGGGGCCTGCCCCAATCTAAGAAGCTTAGGCATGCTTGTCACCCTCGAC
GGCAATGAAACCATAAACTTCCTGTCAGCGGAAATTACCCGAAGTGGTCA
CGGGCTTCAAAAGCTGAACAGATTCGTCATTGGGGACCGTGGCCTCTGGG
GCAAACGCCCCTATGTGGAATTGGTGGGAGCTTTGTCTTCTGGTGGGATG
CCCCGCCTGCAACATTTTCATGCCCTAGGTGACATAAGCACGACGGAGGC
AGGGTCACTGCTGAGGAACTTGATATCTGGTGCTTGCCCTAAACTTGAGG
TAGTCAAGGTGGAGCACACAGAGTTTGCCTTAACGGGCAATCCAGGGCTA
CCAGAGGAAGTTGTCAGGGGCATGTATGACCTCGTCAACAGCAATGCTGT
GCCACACTTGCAACAACTGCACGTCATTGGGATGCATCTGGCAGATGGGG
CACTGGAAAAAGATCCCGAAATCTTATCTAACCCATGCACGAGCTTGGGT
AGGCTCATCTCCTTTGCCTCCAGGAAGGGTGTTAGGATTTTCATTTGA
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