prot_C-tenellus_contig1016.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig1016.2.1
Unique Name	prot_C-tenellus_contig1016.2.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	416

Homology

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BLAST of mRNA_C-tenellus_contig1016.2.1 vs. uniprot
Match: D8LFI8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI8_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 6.210e-52
Identity = 138/389 (35.48%), Postives = 208/389 (53.47%), Query Frame = 0

Query:   14 LPHFVILEVISYLDSRDIIRARSTARAFRFDLLPLVTSLSVTVGEGFPSVHNMELYQSIAKVHLEGMHDVVREMMK-VMAKSSGLR-----QVSVMGSKHGCSKACFGGGCALTILGRPLTELRWRNVCIDIPENVSILAWQTLYTLILVNAKIDDMALVNLMRSIPEKTRLPLQHLDLSFNRI--VDGILSLSDVLREGAFPGLKSLELSGNTISDQGAMQLTTSLCRGACPNLRSLGMLVTLDGNETINFLSAEITRSGHGLQKLNRFVIGDRGLWGKRPYV--ELVG-ALSSGGMPRLQHFHALGDISTTEAGSLLRNLISGACPKLEVVKVEHTEFALTGNPGL-PEEVVRGMYDLVNSNAVPHLQQLHVIGMHLADGALEKDPE 390
            LPH V+LE++S+LD+R I+  R  +RAF  D   LV +L   +G+  PS   ++L+  + +V+L+G  D+V  ++  +    S LR       SV   +   SK      CAL     PLTEL    V I+ P  + + AW+TL  L++ +A + D +L +L +SIPE   LPL+HLDLS N     D +L  +D LR  +FP L+ LELS   I      ++  +L  GACP LR+L + +    N  +  L   +   GHGL  L +   G R + G       E VG AL++GG+P+L   H  GD+   +   +L  L  GACP L +VK+E +  +  G      E+  + M++LV S  +PHL+++H +GM L +G +EK  E
Sbjct:   44 LPHHVVLEIVSFLDTRSIVSGRCLSRAFSSDAPALVKTLDFHMGQQSPSAETIKLFPEVRQVNLDGNRDLVHAVVAGLRGWGSSLRLDVSLHDSVPQKEEPLSKTATTDLCAL-----PLTELDMMEVVIEFPPLLPMNAWRTLQRLVIRDAFLGDESLESLSKSIPEGA-LPLRHLDLSRNLFGGYDTVLPFADALR--SFPDLEWLELSACRICRGSGDRIVRTLLEGACPKLRTLDLSLNFFTNGLLASLCEGLGAPGHGLLNLRKLGFGSR-VTGDEMITCFEKVGKALAAGGLPKLDFLHLQGDVGPRQVSPVLSRLRGGACPMLAMVKLERSLHSTLGEDEFGAEDAAQSMFNLVISGHIPHLREVHALGMALNEG-MEKANE 422

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig1016.2.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig1016.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LFI8_ECTSI	6.210e-52	35.48	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 210..228 e-value: 0.0015 score: 18.5
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 63..405 e-value: 2.0E-15 score: 58.1
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 8..46 score: 8.888
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 127..399
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 9..43

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig1016	contig	C-tenellus_contig1016:6246..7493 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig1016.2.1	mRNA_C-tenellus_contig1016.2.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig1016 5983..7676 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig1016.2.1 ID=prot_C-tenellus_contig1016.2.1|Name=mRNA_C-tenellus_contig1016.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=416bp
MFGRVCQEADVLTLPHFVILEVISYLDSRDIIRARSTARAFRFDLLPLVT
SLSVTVGEGFPSVHNMELYQSIAKVHLEGMHDVVREMMKVMAKSSGLRQV
SVMGSKHGCSKACFGGGCALTILGRPLTELRWRNVCIDIPENVSILAWQT
LYTLILVNAKIDDMALVNLMRSIPEKTRLPLQHLDLSFNRIVDGILSLSD
VLREGAFPGLKSLELSGNTISDQGAMQLTTSLCRGACPNLRSLGMLVTLD
GNETINFLSAEITRSGHGLQKLNRFVIGDRGLWGKRPYVELVGALSSGGM
PRLQHFHALGDISTTEAGSLLRNLISGACPKLEVVKVEHTEFALTGNPGL
PEEVVRGMYDLVNSNAVPHLQQLHVIGMHLADGALEKDPEILSNPCTSLG
RLISFASRKGVRIFI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001611	Leu-rich_rpt
IPR032675	LRR_dom_sf
IPR001810	F-box_dom
IPR036047	F-box-like_dom_sf