mRNA_C-tenellus_contig10157.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-tenellus_contig10157.1.1
Unique Name	mRNA_C-tenellus_contig10157.1.1
Type	mRNA
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)

Homology

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BLAST of mRNA_C-tenellus_contig10157.1.1 vs. uniprot
Match: D8LE11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE11_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.480e-40
Identity = 79/105 (75.24%), Postives = 88/105 (83.81%), Query Frame = 1

Query:    1 MYHPRATRKSQRTSISHASRETRFAAVKAALRKQSLTFEPYSNEVIRALWDELQDRHSRGIHCMLRKGLQNALLERLAGPLDDGRMSKNKVNKIFQVVQSSVVFL 315
            M+  R +RK QR S++HASRE RFAAVKAALRKQSLTFEPYS EVI ALW ELQDRH++G++CMLRKGLQNALL RLA PLD GRMSKNKVNKIFQV+  S   L
Sbjct:    1 MHQARGSRKGQRFSMTHASRENRFAAVKAALRKQSLTFEPYSEEVIHALWGELQDRHAQGVYCMLRKGLQNALLVRLARPLDGGRMSKNKVNKIFQVLIRSCFVL 105

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BLAST of mRNA_C-tenellus_contig10157.1.1 vs. uniprot
Match: A0A836C8Z0_9STRA (C3H1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.070e-8
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 1

Query:   67 RFAAVKAALRKQSLTFEPYSNEVIRALWDELQDR-HSRGIHCMLRKGLQNALLERLAGPLDDGRMSKNKVN 276
            +FAAV+AALRKQSLT EPYS  V   LW  +Q R  + G   + RK LQ+ L++ LA  LD   MSKNK++
Sbjct:   29 KFAAVRAALRKQSLTHEPYSEFVATELWQCVQRRVEAYGTTKVHRKQLQSELIQALAPYLDKNEMSKNKLS 99

[Close]

BLAST of mRNA_C-tenellus_contig10157.1.1 vs. uniprot
Match: A0A6H5L6J3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J3_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.620e-8
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 1

Query:  190 MLRKGLQNALLERLAGPLDDGRMSKNKVNKIFQVVQSSVVFL 315
            MLRKGLQNALL RLA PL+ GRMSKNKVNKIFQV+  S   L
Sbjct:    1 MLRKGLQNALLVRLARPLNGGRMSKNKVNKIFQVLIRSCFVL 42

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig10157.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig10157.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LE11_ECTSI	1.480e-40	75.24	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A836C8Z0_9STRA	2.070e-8	52.11	C3H1-type domain-containing protein n=1 Tax=Tribon...	[more]
A0A6H5L6J3_9PHAE	3.620e-8	76.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig10157	contig	C-tenellus_contig10157:549..2401 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	2880.D8LE11
Model size	318
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	other localisation
GOs	GO:0000165,GO:0000981,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002694,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006417,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009611,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010948,GO:0014070,GO:0016070,GO:0016071,GO:0016310,GO:0017091,GO:0017145,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019827,GO:0023014,GO:0023052,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031960,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032870,GO:0033077,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034612,GO:0034641,GO:0034655,GO:0035019,GO:0035556,GO:0035925,GO:0036211,GO:0042110,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044344,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0045577,GO:0045595,GO:0045596,GO:0045598,GO:0045599,GO:0045619,GO:0045786,GO:0045930,GO:0045935,GO:0046483,GO:0046649,GO:0046700,GO:0048103,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0050779,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051252,GO:0051254,GO:0051301,GO:0051384,GO:0051716,GO:0051726,GO:0060216,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0065007,GO:0065008,GO:0070371,GO:0070848,GO:0070849,GO:0070887,GO:0071310,GO:0071345,GO:0071356,GO:0071363,GO:0071364,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071495,GO:0071559,GO:0071560,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097011,GO:0097012,GO:0097159,GO:0098727,GO:0140110,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902105,GO:1903311,GO:1903313,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000113,GO:2000736,GO:2000737,GO:2001141
Exons	3
Evalue	2.43e-41
EggNOG OGs	KOG1595@1\|root,KOG1595@2759\|Eukaryota
Description	DNA binding
Cds size	318
COG category	K

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789118.1974285-CDS-C-tenellus_contig10157:548..734	1680789118.1974285-CDS-C-tenellus_contig10157:548..734	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig10157 549..734 -
1680789118.209708-CDS-C-tenellus_contig10157:1461..1497	1680789118.209708-CDS-C-tenellus_contig10157:1461..1497	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig10157 1462..1497 -
1680789118.2202344-CDS-C-tenellus_contig10157:2305..2401	1680789118.2202344-CDS-C-tenellus_contig10157:2305..2401	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig10157 2306..2401 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig10157.1.1	prot_C-tenellus_contig10157.1.1	Choristocarpus tenellus KU2346	polypeptide	C-tenellus_contig10157 549..2401 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-tenellus_contig10157:549..2401-
coding sequence from alignment at C-tenellus_contig10157:549..2401-

protein sequence of mRNA_C-tenellus_contig10157.1.1

>prot_C-tenellus_contig10157.1.1 ID=prot_C-tenellus_contig10157.1.1|Name=mRNA_C-tenellus_contig10157.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=106bp
MYHPRATRKSQRTSISHASRETRFAAVKAALRKQSLTFEPYSNEVIRALW
DELQDRHSRGIHCMLRKGLQNALLERLAGPLDDGRMSKNKVNKIFQVVQS
SVVFL*

mRNA from alignment at C-tenellus_contig10157:549..2401-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-tenellus_contig10157.1.1 ID=mRNA_C-tenellus_contig10157.1.1|Name=mRNA_C-tenellus_contig10157.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1853bp|location=Sequence derived from alignment at C-tenellus_contig10157:549..2401- (Choristocarpus tenellus KU2346)
ATGTATCATCCTCGGGCGACAAGGAAAAGCCAGCGCACTTCTATAAGTCA
TGCGTCCAGGGAAACACGGTTCGCGGCTGTCAAGGCTGCTCTCAGAGTGA
GTGGGTTCTAGTGGTCGATAGTACTGCGACACAACCTTCTCTCTGCCACA
AATGAGCCATGAATTGATGGCGACACAGCGAACCTAGGTTTCTATTCTCC
TTTCTCACCCAGTTTTACCATCTTGTGAAGTATGCTACTACTCAAATCAA
CATCATATGGAGGGACTGGAGATTGGATGCAACGTTCGGCACGCACGTAT
CCAGGTTTCGGGTTGAACGAATCCCTCACGGTCAATAAACAGTATGCCTT
TGTGACAGCAGCGTGTGTGGACTCCCACCCAAAGAACAGACTCGCTTTTT
TCTCCGAAGAAATTATATACACACTCATGTCAGTGGTATGCGGTTTGAAA
TAGGATACTGACCTCGTAGACTTTCTCTCTGGAGGACAACTTTCTGCACC
TATGAAGAAGATAGCCTGTTCCAGTCCTTTCGCCGAATCCACCTAGTGCG
GAACCCAGCGTCTCCAAGAAACTAGAATAAGATCATACGGCTATATGGTT
ACAAACCCTGGGTGTGTGTACATGTCCGATAAGCCTGACAAGTGACTGCA
ACGTTCTAATATTACGATTCGCTAACTTCTTTCCTCTTGCTTCCTATTGA
GCCGAGATTCTCCTTGTTCAAGTTGAACCGTGAATCCATGTACTTGCCAC
TACCTCTTTCCTCTTGTGACTTCCTTTTGACGTCCACCCCTTGGATCCGA
GCTCTACAGTCCAATATGTTCATCTTCAGTTCTGTACCCACAACCCCTTG
CTATTATCCCGACCCCATACTCTCCTGTTCCTTTCTGGCTGTTGTGATGA
GCAGAAGCAAAGCTTGACCTTTGAGCCCTATTCCAACGAGGTGAGTTCAA
TTACTTACCTTTTTTATTTTGTGGTGATCCCTTTATTCTGTAGGCTTGCT
CTTATCTCTCAAAAGCACCGTTCTATACAACAATTGATGTGATGTTAAGT
GCTGTTTGTACCAGAATCTAGCGAGACCTCTGGCATTTTCTCTTTGTGAC
AAGATTTAAGTGTAGCTGCCTAGGTAAGCAAGGTGGTGGGCTGTGAACTG
AGAAAAATGGGGAGGGCGTTTGACTGGAGTATTTCTAGGGAGAAAGGTTC
CTTGTAAGGGAAAGGACTTTATTACCGTGTTGGGCGATATTCCTGTATTG
GGCATTTATGTAGCTGCAACCTGGAGCACTATGTTGACTTGTATGCAATA
AACAAAGGTCGTTTTGGTAGATGGTGTTGAGCTATAATAAGTCACTGACT
GCTTTGTTGAGACCTACCCAACATGGTGTGCCAGTGATATGCAAACTCAC
AACCTTGACTCAAGCCGATATATAGGAGTTCACAGACATACTTCATACCA
TAAACTCAGACACATAGATACATGCAAGTCCACACATACAAACATTTCAC
AAATATAGAATCCATGTACACTTGACACAGTACACGCTCCATGTAACCCG
CCTTCAGCAGTTGAAGCATTTTGCTTGACGTGTCAACTGAATTGCTCAAC
CAGCACAACCAGCGGTTATTGAGCCACTTGTTCATGAATGTGATTCCGCA
CCTATATTATGTTACAGGTAATTCGTGCACTTTGGGATGAGCTACAGGAC
AGACACAGTCGTGGTATCCACTGTATGCTACGGAAGGGTCTGCAAAATGC
ACTACTTGAAAGGCTGGCAGGCCCTCTTGATGACGGGCGTATGAGCAAGA
ATAAGGTCAACAAAATTTTCCAGGTGGTTCAATCTAGTGTCGTTTTTCTG
TAA

Coding sequence (CDS) from alignment at C-tenellus_contig10157:549..2401-

>mRNA_C-tenellus_contig10157.1.1 ID=mRNA_C-tenellus_contig10157.1.1|Name=mRNA_C-tenellus_contig10157.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=318bp|location=Sequence derived from alignment at C-tenellus_contig10157:549..2401- (Choristocarpus tenellus KU2346)
ATGTATCATCCTCGGGCGACAAGGAAAAGCCAGCGCACTTCTATAAGTCA
TGCGTCCAGGGAAACACGGTTCGCGGCTGTCAAGGCTGCTCTCAGAAAGC
AAAGCTTGACCTTTGAGCCCTATTCCAACGAGGTAATTCGTGCACTTTGG
GATGAGCTACAGGACAGACACAGTCGTGGTATCCACTGTATGCTACGGAA
GGGTCTGCAAAATGCACTACTTGAAAGGCTGGCAGGCCCTCTTGATGACG
GGCGTATGAGCAAGAATAAGGTCAACAAAATTTTCCAGGTGGTTCAATCT
AGTGTCGTTTTTCTGTAA