mRNA_C-tenellus_contig1006.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1006.2.1
Unique NamemRNA_C-tenellus_contig1006.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1006.2.1 vs. uniprot
Match: D7FJH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH4_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.820e-35
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    1 LIKYFPQVFLNMRRRSTTGWNVWNVILDLTGGILSVLQLVLDCYNVGDWSGILGYPVKFGLGFVSVFFDLIFLAQ 225
            +IKY PQV LN+RR ST GW +WNVILDLTGG+LSV+QLVLDC+N GDW GI GYPVKF +GFVSVFFDLIFL Q
Sbjct:  179 IIKYVPQVILNIRRHSTAGWTIWNVILDLTGGLLSVVQLVLDCWNTGDWGGIAGYPVKFAIGFVSVFFDLIFLFQ 253          
BLAST of mRNA_C-tenellus_contig1006.2.1 vs. uniprot
Match: A0A6H5L0H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H5_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 6.040e-35
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    1 LIKYFPQVFLNMRRRSTTGWNVWNVILDLTGGILSVLQLVLDCYNVGDWSGILGYPVKFGLGFVSVFFDLIFLAQ 225
            +IKY PQV LN+RR ST GW +WNVILDLTGG+LSV+QLVLDC+N GDW GI GYPVKF +GFVSVFFDLIFL Q
Sbjct:  239 IIKYVPQVILNIRRHSTAGWTIWNVILDLTGGLLSVVQLVLDCWNTGDWGGIAGYPVKFAIGFVSVFFDLIFLFQ 313          
BLAST of mRNA_C-tenellus_contig1006.2.1 vs. uniprot
Match: A0A7S1CW51_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CW51_CYCTE)

HSP 1 Score: 112 bits (279), Expect = 7.890e-30
Identity = 49/75 (65.33%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 LIKYFPQVFLNMRRRSTTGWNVWNVILDLTGGILSVLQLVLDCYNVGDWSGILGYPVKFGLGFVSVFFDLIFLAQ 225
            LIKY PQV LN +R+ST GW++WNV+LD +GG+LS LQLVLDC ++GDW+GI G   KFGLGFVS+ FD+IF+ Q
Sbjct:   46 LIKYVPQVILNYQRKSTVGWSIWNVLLDFSGGLLSDLQLVLDCADMGDWTGITGNLAKFGLGFVSILFDVIFMLQ 120          
BLAST of mRNA_C-tenellus_contig1006.2.1 vs. uniprot
Match: A0A7S4DB46_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB46_HETAK)

HSP 1 Score: 116 bits (290), Expect = 1.130e-29
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 LIKYFPQVFLNMRRRSTTGWNVWNVILDLTGGILSVLQLVLDCYNVGDWSGILGYPVKFGLGFVSVFFDLIFLAQ 225
            ++KY PQ +LN RRRST GW++ NV+LD  GG+LSVLQL+LDC+  GDW GI G PVKFGLGFVS+FFD+IF+ Q
Sbjct:  241 VVKYIPQAYLNYRRRSTAGWSIGNVLLDALGGLLSVLQLILDCHATGDWGGITGDPVKFGLGFVSIFFDVIFMLQ 315          
BLAST of mRNA_C-tenellus_contig1006.2.1 vs. uniprot
Match: A0A8H7SE43_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SE43_9FUNG)

HSP 1 Score: 114 bits (285), Expect = 4.500e-29
Identity = 47/75 (62.67%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    1 LIKYFPQVFLNMRRRSTTGWNVWNVILDLTGGILSVLQLVLDCYNVGDWSGILGYPVKFGLGFVSVFFDLIFLAQ 225
            ++KY PQV++N +R+ST GW+++N++LD TGG+LSV QL+LD Y  GDWSG+ G PVKFGLGFVS+FFDL F+ Q
Sbjct:  174 IVKYLPQVWINFKRKSTVGWSIYNILLDFTGGVLSVAQLLLDAYLSGDWSGVSGDPVKFGLGFVSIFFDLFFMTQ 248          
BLAST of mRNA_C-tenellus_contig1006.2.1 vs. uniprot
Match: A0A397W955_9GLOM (PQ loop repeat-domain-containing protein (Fragment) n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397W955_9GLOM)

HSP 1 Score: 110 bits (276), Expect = 2.550e-28
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 LIKYFPQVFLNMRRRSTTGWNVWNVILDLTGGILSVLQLVLDCYNVGDWSGILGYPVKFGLGFVSVFFDLIFLAQ 225
            LIKY PQ +LN RR+ST GW++ N++LD TGG+LS+LQL+LD Y   +WSGI G PVKFGLGF+S+ FDL+F++Q
Sbjct:  147 LIKYLPQAYLNFRRKSTVGWSIHNILLDFTGGVLSILQLILDAYLTNNWSGISGDPVKFGLGFLSIGFDLLFMSQ 221          
BLAST of mRNA_C-tenellus_contig1006.2.1 vs. uniprot
Match: A0A7S1Z196_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z196_TRICV)

HSP 1 Score: 113 bits (283), Expect = 2.580e-28
Identity = 47/75 (62.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 LIKYFPQVFLNMRRRSTTGWNVWNVILDLTGGILSVLQLVLDCYNVGDWSGILGYPVKFGLGFVSVFFDLIFLAQ 225
            ++KY PQV LN+RR ST GWN+WN+ILD TGG+LS++QL+ D  ++GDWSGI+G P KF LGFVS+ FD+IF  Q
Sbjct:  293 VVKYIPQVILNIRRESTVGWNIWNIILDFTGGMLSIMQLIGDSADMGDWSGIIGNPAKFALGFVSIIFDIIFFLQ 367          
BLAST of mRNA_C-tenellus_contig1006.2.1 vs. uniprot
Match: A0A836C9F4_9STRA (Putative lysosomal cystine transporter family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.960e-28
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 LIKYFPQVFLNMRRRSTTGWNVWNVILDLTGGILSVLQLVLDCYNVGDWSGILGYPVKFGLGFVSVFFDLIFLAQ 225
            L+KY PQ  LN RRRST GW+++NV+LD TGG+LS+LQL+LDC N  DWSGI+G PVKFGLG  S+ FD++FL Q
Sbjct:  199 LVKYIPQAALNARRRSTQGWSIYNVLLDFTGGLLSLLQLLLDCGNTRDWSGIVGTPVKFGLGLTSMVFDVVFLTQ 273          
BLAST of mRNA_C-tenellus_contig1006.2.1 vs. uniprot
Match: A0A0B1TDJ1_OESDE (Cystinosin domain protein n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1TDJ1_OESDE)

HSP 1 Score: 107 bits (268), Expect = 1.240e-27
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 LIKYFPQVFLNMRRRSTTGWNVWNVILDLTGGILSVLQLVLDCYNVGDWSGILGYPVKFGLGFVSVFFDLIFLAQ 225
            L KY PQ  LN RR+STTGW++ NV+LD TGG L +LQ+ L C+NV DW+   G PVKFGLG VS+FFD++F+ Q
Sbjct:   58 LFKYIPQALLNFRRKSTTGWSIGNVLLDFTGGCLDILQMCLQCWNVADWTAFYGNPVKFGLGLVSIFFDILFMIQ 132          
BLAST of mRNA_C-tenellus_contig1006.2.1 vs. uniprot
Match: A0A068RS72_9FUNG (Lysosomal cystine transporter family n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RS72_9FUNG)

HSP 1 Score: 108 bits (270), Expect = 3.210e-27
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    1 LIKYFPQVFLNMRRRSTTGWNVWNVILDLTGGILSVLQLVLDCYNVGDWSGILGYPVKFGLGFVSVFFDLIFLAQ 225
            +IKY PQ ++N RR+ST GW++ N++LD TGG LSV QL+LD Y  GDWSG+ G PVKFGLGFVS+ FDL+F+ Q
Sbjct:  171 IIKYLPQAWINFRRKSTVGWSIHNILLDFTGGTLSVAQLLLDSYLSGDWSGVSGDPVKFGLGFVSIAFDLLFITQ 245          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1006.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJH4_ECTSI1.820e-3577.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0H5_9PHAE6.040e-3577.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1CW51_CYCTE7.890e-3065.33Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4DB46_HETAK1.130e-2966.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8H7SE43_9FUNG4.500e-2962.67Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A397W955_9GLOM2.550e-2862.67PQ loop repeat-domain-containing protein (Fragment... [more]
A0A7S1Z196_TRICV2.580e-2862.67Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A836C9F4_9STRA2.960e-2865.33Putative lysosomal cystine transporter family n=1 ... [more]
A0A0B1TDJ1_OESDE1.240e-2760.00Cystinosin domain protein n=1 Tax=Oesophagostomum ... [more]
A0A068RS72_9FUNG3.210e-2762.67Lysosomal cystine transporter family n=2 Tax=Licht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1006contigC-tenellus_contig1006:263..1522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJH4
PFAMsPQ-loop
Model size225
Max annot lvl2759|Eukaryota
KEGG koko:K12386
KEGG Pathwayko04142,map04142
Hectar predicted targeting categorymitochondrion
GOsGO:0000099,GO:0000101,GO:0000322,GO:0000323,GO:0000324,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0012505,GO:0015075,GO:0015171,GO:0015179,GO:0015184,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015811,GO:0015849,GO:0016020,GO:0016021,GO:0022857,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072337,GO:0072348,GO:0072349,GO:0097708,GO:0098588,GO:0098656,GO:0098805,GO:1901682,GO:1902475,GO:1903825,GO:1905039
Exons2
Evalue2.98e-36
EggNOG OGsKOG3145@1|root,KOG3145@2759|Eukaryota
DescriptionL-cystine transmembrane transporter activity
Cds size225
COG categoryS
BRITEko00000,ko00001,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789113.194714-CDS-C-tenellus_contig1006:262..3761680789113.194714-CDS-C-tenellus_contig1006:262..376Choristocarpus tenellus KU2346CDSC-tenellus_contig1006 263..376 +
1680789113.2046657-CDS-C-tenellus_contig1006:1411..15221680789113.2046657-CDS-C-tenellus_contig1006:1411..1522Choristocarpus tenellus KU2346CDSC-tenellus_contig1006 1412..1522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1006.2.1prot_C-tenellus_contig1006.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1006 263..1522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1006.2.1

>prot_C-tenellus_contig1006.2.1 ID=prot_C-tenellus_contig1006.2.1|Name=mRNA_C-tenellus_contig1006.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=75bp
LIKYFPQVFLNMRRRSTTGWNVWNVILDLTGGILSVLQLVLDCYNVGDWS
GILGYPVKFGLGFVSVFFDLIFLAQ
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mRNA from alignment at C-tenellus_contig1006:263..1522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1006.2.1 ID=mRNA_C-tenellus_contig1006.2.1|Name=mRNA_C-tenellus_contig1006.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1260bp|location=Sequence derived from alignment at C-tenellus_contig1006:263..1522+ (Choristocarpus tenellus KU2346)
TTGATCAAGTACTTCCCACAGGTGTTTCTAAATATGCGCAGGCGAAGCAC TACTGGATGGAATGTGTGGAATGTGATTTTGGACTTGACTGGAGGGATAC TCAGTGTTTTGCAGGTAAGAAACAAGCAAGTAGTTCATGTTTATTATGAC AATATTTGGACACGCATGCATATGACCTACCTTTTTTTAATTTCTGTCTT TGTATACGTGTGTTTGTCTTTTTTATTTTCAAAACTTTGTGGACAGTGGT TGTAATATAGGGTGTGCAAATAAATAATAATAATAATAATAATAATAATA ATAACATATGTGTGACACATGATTTCATCCCAAAGTATAAAATATAGTCA TTTATGTTGTCCTTTGCAGTAGATGAGAAGAAATACATGGTAGTAGCCCC TTTGAAGGGTACTGTCTTCTTTCACAGCTGAGGGTTCCACTGAATCCGCA TGACTATCAAACACCAGAACAACAAAAAAGTATATAATCTCATTTCTTGT TGTCAAAATACGTTTGCGGACTCTTGCATGGATGTGGCATGGATTTTCAA AAATGTTTCCATTTTGAACATATTTTTTCTTCACAAGAGCCTCCCTCCCC CCAGAAAGCAGGGCAGGTGAAACAAGATAATCTCAGTGTGTCAAAATGAT GTCTAGTCCCTGGGAGAGGGCCATCTGATCTTCTGATATTTATTGCATTA TTGAGTTTTAAATTTTAAAATGGTATGTACAGCTACCTAAATTCCTCTGC AGATCCTAAATCCCGATGCTTATGTGTGTGTGTGTGTGTGTGTGTTATTT TTGCAGAGGTGAGGAGGCATCAACATGCATTCTTCACCACAACGGGCAAC CAATCTCTTCTTCAAGCCCTTTTCCTCTTGTGTTGTGTTTTTAGAACATT TAGAGACTACTTCAAAACTAGAGCACATATTCATTTCACTGCAGTCATGC TTCAAGTCAGCTCACGATGCTGGGCCTGGGCCAAGGGTGATTACCTGCTC TGGAAACATGTATCTGAGGTGTACGTGAGGTTCCCCAGTTCATGATAACC ATTCTATTACCCTCCTCACAGTTACACAACTATTTTATCCCTCCCATTCT TATCCCCCCACTCTATGAACTCAAAAATATATTGCTTGTCCACGTGCAGC TGGTGCTGGATTGCTACAACGTTGGAGACTGGAGTGGCATCCTTGGCTAT CCTGTTAAGTTTGGACTTGGCTTTGTGAGTGTGTTCTTTGACCTAATCTT CTTGGCACAG
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Coding sequence (CDS) from alignment at C-tenellus_contig1006:263..1522+

>mRNA_C-tenellus_contig1006.2.1 ID=mRNA_C-tenellus_contig1006.2.1|Name=mRNA_C-tenellus_contig1006.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=225bp|location=Sequence derived from alignment at C-tenellus_contig1006:263..1522+ (Choristocarpus tenellus KU2346)
TTGATCAAGTACTTCCCACAGGTGTTTCTAAATATGCGCAGGCGAAGCAC
TACTGGATGGAATGTGTGGAATGTGATTTTGGACTTGACTGGAGGGATAC
TCAGTGTTTTGCAGCTGGTGCTGGATTGCTACAACGTTGGAGACTGGAGT
GGCATCCTTGGCTATCCTGTTAAGTTTGGACTTGGCTTTGTGAGTGTGTT
CTTTGACCTAATCTTCTTGGCACAG
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