mRNA_C-tenellus_contig100.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig100.4.1
Unique NamemRNA_C-tenellus_contig100.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig100.4.1 vs. uniprot
Match: A0A7S2UU84_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU84_9STRA)

HSP 1 Score: 139 bits (350), Expect = 5.810e-41
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 1
Query:   10 PAKSEGGDDAKETITIRVRDQTGEETFFKVKKSTRMEKVFSTYAQRKGVNVAALRFLLDGERVSPDATPKALDLEDQDQIDCMLEQQGGRA 282
            P   +GG +   TITIRVRDQTGEETFFKVKK+TRMEKVF+TYA RKGV V ALRFLLDGERV+P  TPK LDLEDQDQIDCMLEQQGG A
Sbjct:   12 PKAPDGGGEENNTITIRVRDQTGEETFFKVKKTTRMEKVFTTYASRKGVQVNALRFLLDGERVNPAHTPKMLDLEDQDQIDCMLEQQGGAA 102          
BLAST of mRNA_C-tenellus_contig100.4.1 vs. uniprot
Match: A0A7S2G492_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G492_9STRA)

HSP 1 Score: 136 bits (343), Expect = 9.170e-40
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 1
Query:   31 DDAKETITIRVRDQTGEETFFKVKKSTRMEKVFSTYAQRKGVNVAALRFLLDGERVSPDATPKALDLEDQDQIDCMLEQQGG 276
            D+  ETITIRVRDQTGEETFFKVKKSTR EKVFSTYAQRKGVNVA+LRFL+DGER++P  +P  LD+EDQDQIDCMLEQQGG
Sbjct:   34 DEKGETITIRVRDQTGEETFFKVKKSTRFEKVFSTYAQRKGVNVASLRFLIDGERINPSQSPAELDMEDQDQIDCMLEQQGG 115          
BLAST of mRNA_C-tenellus_contig100.4.1 vs. uniprot
Match: A0A835YTL0_9STRA (Ubiquitin-related domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL0_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.040e-39
Identity = 74/96 (77.08%), Postives = 81/96 (84.38%), Query Frame = 1
Query:    1 MSEPAKSE-GGDDAK---ETITIRVRDQTGEETFFKVKKSTRMEKVFSTYAQRKGVNVAALRFLLDGERVSPDATPKALDLEDQDQIDCMLEQQGG 276
            MSE +K + G +D K   ETITIRVRDQTGEETFFKVKK+TRMEKVFSTYAQRKGV  +ALRFLLDG+RV P+ TP  LDLEDQD IDCMLEQQGG
Sbjct:    1 MSEDSKPDVGAEDKKPAGETITIRVRDQTGEETFFKVKKTTRMEKVFSTYAQRKGVQASALRFLLDGDRVDPNQTPGELDLEDQDMIDCMLEQQGG 96          
BLAST of mRNA_C-tenellus_contig100.4.1 vs. uniprot
Match: A0A7S1D4N0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4N0_CYCTE)

HSP 1 Score: 131 bits (329), Expect = 7.920e-38
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 1
Query:    1 MSEPAKSEGGDDAKETITIRVRDQTGEETFFKVKKSTRMEKVFSTYAQRKGVNVAALRFLLDGERVSPDATPKALDLEDQDQIDCMLEQQG 273
            MSE AK EG     E ITIRVRDQTGEETFFK+KK+T+M KVF TYAQRKGV   +LRFLLDGER+ PDATPK L+L+DQDQIDCMLEQ G
Sbjct:    1 MSEEAKPEGS----EPITIRVRDQTGEETFFKIKKTTKMSKVFETYAQRKGVQSTSLRFLLDGERIEPDATPKMLELDDQDQIDCMLEQTG 87          
BLAST of mRNA_C-tenellus_contig100.4.1 vs. uniprot
Match: B7G0R2_PHATC (Small ubiquitin-like modifier n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G0R2_PHATC)

HSP 1 Score: 130 bits (326), Expect = 2.410e-37
Identity = 63/93 (67.74%), Postives = 79/93 (84.95%), Query Frame = 1
Query:    1 MSEPAKSEGGDDAKETITIRVRDQTGEETFFKVKKSTRMEKVFSTYAQRKGVNVAALRFLLDGERVSPDATPKALDLEDQDQIDCMLEQQGGR 279
            M  PA +E   ++ E+IT+RVRDQTGEETFFK+KK+T+M+KVF TYA RKGV V +LRFLLDG+R++PD TPK L+LEDQDQIDC+LEQ GG+
Sbjct:    1 MDVPATTEDVKESAESITVRVRDQTGEETFFKIKKTTKMQKVFETYATRKGVQVNSLRFLLDGDRITPDQTPKMLELEDQDQIDCVLEQTGGK 93          
BLAST of mRNA_C-tenellus_contig100.4.1 vs. uniprot
Match: A0A7S2XQM2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQM2_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.540e-36
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1
Query:   37 AKETITIRVRDQTGEETFFKVKKSTRMEKVFSTYAQRKGVNVAALRFLLDGERVSPDATPKALDLEDQDQIDCMLEQQGG 276
            A E ITIRVRDQTGEETFFK+KK+T+M KVF TYAQRKGV  A+LRFLLDGER+ PDATP+ L+L+DQDQIDCMLEQ GG
Sbjct:   38 ASEPITIRVRDQTGEETFFKIKKTTKMAKVFETYAQRKGVQSASLRFLLDGERIQPDATPRQLELDDQDQIDCMLEQTGG 117          
BLAST of mRNA_C-tenellus_contig100.4.1 vs. uniprot
Match: A0A448ZJ15_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJ15_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.970e-36
Identity = 62/88 (70.45%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   13 AKSEGGDDAKETITIRVRDQTGEETFFKVKKSTRMEKVFSTYAQRKGVNVAALRFLLDGERVSPDATPKALDLEDQDQIDCMLEQQGG 276
            A  +  D   E ITIRVRDQTGEETFFK+KK+T+M KVF TYA RKGV +++LRFLLDGER+ PD TPK L+L+DQDQIDCMLEQ GG
Sbjct:    3 ADEKAPDTGNEPITIRVRDQTGEETFFKIKKTTKMSKVFGTYANRKGVQLSSLRFLLDGERIEPDQTPKMLELDDQDQIDCMLEQSGG 90          
BLAST of mRNA_C-tenellus_contig100.4.1 vs. uniprot
Match: A0A7S1YCA7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YCA7_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.320e-35
Identity = 63/94 (67.02%), Postives = 77/94 (81.91%), Query Frame = 1
Query:    1 MSEPAKSEGGDDAKETITIRVRDQTGEETFFKVKKSTRMEKVFSTYAQRKGVNVAALRFLLDGERVSPDATPKALDLEDQDQIDCMLEQQGGRA 282
            M++  + EG     E ITIRVRDQ+GEETFFK+KK+T+M KVF TYAQRKGVN ++LRFLLDGER+  D TPK L+L+DQDQIDCMLEQ GG++
Sbjct:   37 MADDGQKEGS----EPITIRVRDQSGEETFFKIKKTTKMSKVFETYAQRKGVNSSSLRFLLDGERIEGDQTPKMLELDDQDQIDCMLEQTGGKS 126          
BLAST of mRNA_C-tenellus_contig100.4.1 vs. uniprot
Match: A0A067CC35_SAPPC (Ubiquitin-like domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CC35_SAPPC)

HSP 1 Score: 124 bits (311), Expect = 3.770e-35
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 1
Query:   28 GDDAKETITIRVRDQTGEETFFKVKKSTRMEKVFSTYAQRKGVNVAALRFLLDGERVSPDATPKALDLEDQDQIDCMLEQQGG 276
            G+D K+TITIRV+DQ+GEETFFKVK  T+MEK+FS YAQRKGV V ALRFLLDG R++ D TPK L+LEDQDQIDC LEQ GG
Sbjct:   13 GEDKKQTITIRVKDQSGEETFFKVKPHTKMEKIFSAYAQRKGVPVTALRFLLDGTRIAADQTPKMLELEDQDQIDCALEQVGG 95          
BLAST of mRNA_C-tenellus_contig100.4.1 vs. uniprot
Match: A0A024TXQ1_9STRA (Ubiquitin-like domain-containing protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TXQ1_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.890e-35
Identity = 65/93 (69.89%), Postives = 76/93 (81.72%), Query Frame = 1
Query:    1 MSEPAKSEGGDDAK-ETITIRVRDQTGEETFFKVKKSTRMEKVFSTYAQRKGVNVAALRFLLDGERVSPDATPKALDLEDQDQIDCMLEQQGG 276
            MS+   ++GG+D K +TITIRV+DQ+GEETFFKVK  T+MEK+FS YAQRKGV V ALRFLLDG R+  D TPK L+LEDQDQIDC LEQ GG
Sbjct:    1 MSDNEDNKGGEDEKKQTITIRVKDQSGEETFFKVKPHTKMEKIFSAYAQRKGVPVTALRFLLDGTRIGGDQTPKMLELEDQDQIDCALEQVGG 93          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig100.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UU84_9STRA5.810e-4179.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2G492_9STRA9.170e-4082.93Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YTL0_9STRA1.040e-3977.08Ubiquitin-related domain-containing protein n=1 Ta... [more]
A0A7S1D4N0_CYCTE7.920e-3874.73Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B7G0R2_PHATC2.410e-3767.74Small ubiquitin-like modifier n=3 Tax=Phaeodactylu... [more]
A0A7S2XQM2_9STRA1.540e-3678.75Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448ZJ15_9STRA3.970e-3670.45Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
A0A7S1YCA7_9STRA3.320e-3567.02Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A067CC35_SAPPC3.770e-3574.70Ubiquitin-like domain-containing protein n=4 Tax=S... [more]
A0A024TXQ1_9STRA3.890e-3569.89Ubiquitin-like domain-containing protein n=5 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig100contigC-tenellus_contig100:2406..3414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr27817
PFAMsRad60-SLD
Model size285
Max annot lvl2836|Bacillariophyta
KEGG koko:K12160
KEGG Pathwayko03013,ko05418,map03013,map05418
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.95e-38
EggNOG OGsCOG5227@1|root,KOG1769@2759|Eukaryota,2XH1C@2836|Bacillariophyta
DescriptionUbiquitin-2 like Rad60 SUMO-like
Cds size285
COG categoryO
BRITEko00000,ko00001,ko00002,ko03019,ko03029,ko04121,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789108.5457106-CDS-C-tenellus_contig100:2405..24771680789108.5457106-CDS-C-tenellus_contig100:2405..2477Choristocarpus tenellus KU2346CDSC-tenellus_contig100 2406..2477 +
1680789108.5563095-CDS-C-tenellus_contig100:3201..34141680789108.5563095-CDS-C-tenellus_contig100:3201..3414Choristocarpus tenellus KU2346CDSC-tenellus_contig100 3202..3414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig100.4.1prot_C-tenellus_contig100.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig100 2406..3414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig100.4.1

>prot_C-tenellus_contig100.4.1 ID=prot_C-tenellus_contig100.4.1|Name=mRNA_C-tenellus_contig100.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=95bp
MSEPAKSEGGDDAKETITIRVRDQTGEETFFKVKKSTRMEKVFSTYAQRK
GVNVAALRFLLDGERVSPDATPKALDLEDQDQIDCMLEQQGGRA*
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mRNA from alignment at C-tenellus_contig100:2406..3414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig100.4.1 ID=mRNA_C-tenellus_contig100.4.1|Name=mRNA_C-tenellus_contig100.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1009bp|location=Sequence derived from alignment at C-tenellus_contig100:2406..3414+ (Choristocarpus tenellus KU2346)
ATGAGTGAACCGGCTAAGTCCGAGGGCGGCGATGATGCTAAGGAAACAAT TACCATTCGTGTAAGGGACCAGGTGAGGTGATGAAACTTCGTTTTCTTCA TTCTTGACTAGGTCCCTACTGACGAGGCATCGGTGTGCCTATCCCTTCCT CTTTTGGGAAGGGCACTTCCGCGCTGTGAGTCTTATGTGGCATATCTGTG TATCTCGCTAACCGTCAAGATATTTCTCCAGTAAACGTTTTCCATACGCC CAGTCGCTCTTTTGGTCATGTGATACCTAGGAGTTCCAAGACCCTCGGGA CAGATCCAAGTATCATGGTCATTTTCATCTCTTTCGCTGGGGACAGATGC ACTTAGTCGAAAGTAAAGCAGAATACCAACACGACCTGTTAAAGGCAAAA AACAATTCAGAAGTGTAGAATGAGTCAAATCAAAATCCCCCCCGTTATTT TCAAGCTGCCAAACAAACACGAAAATGCCAACCGAGTGAAGTACCTCTTA CGCCATGAGATACGCACACACTGTCCACGTTGTCTTTCAGGCAAAAACTG CATTTCTATACACACCTTAGCATGACATTTTGAGTAGAGGTATGCCATTT CATTCACTGCGGGTCCCAGGTGGTCTGCTTATGAGTGCATATCCCATCTC TGGGGGAAAGTGTACTGCTGCTTTTCGTTTGGTGGTCAGCATTTTTTTTT CTGGAATAAATTTTGGCTATGTCAATAGATGAATGTCGACCAACTAAAGA AGACGATCCGCTTTCAACCACCTTTTTTTCTTTTTTTTCTTCGCAGACAG GGGAAGAGACCTTCTTCAAGGTGAAGAAGTCAACTCGCATGGAGAAGGTT TTTTCCACATACGCACAGCGCAAGGGTGTAAATGTAGCTGCCCTGCGTTT CCTCTTGGATGGTGAACGTGTTAGCCCTGATGCCACCCCCAAGGCCCTAG ACCTTGAAGATCAGGATCAAATTGATTGCATGTTGGAGCAGCAGGGAGGA AGAGCTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig100:2406..3414+

>mRNA_C-tenellus_contig100.4.1 ID=mRNA_C-tenellus_contig100.4.1|Name=mRNA_C-tenellus_contig100.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=285bp|location=Sequence derived from alignment at C-tenellus_contig100:2406..3414+ (Choristocarpus tenellus KU2346)
ATGAGTGAACCGGCTAAGTCCGAGGGCGGCGATGATGCTAAGGAAACAAT
TACCATTCGTGTAAGGGACCAGACAGGGGAAGAGACCTTCTTCAAGGTGA
AGAAGTCAACTCGCATGGAGAAGGTTTTTTCCACATACGCACAGCGCAAG
GGTGTAAATGTAGCTGCCCTGCGTTTCCTCTTGGATGGTGAACGTGTTAG
CCCTGATGCCACCCCCAAGGCCCTAGACCTTGAAGATCAGGATCAAATTG
ATTGCATGTTGGAGCAGCAGGGAGGAAGAGCTTGA
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