prot_C-linearis_contig99.17179.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig99.17179.1
Unique Nameprot_C-linearis_contig99.17179.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length281
Homology
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: D8LPM7_ECTSI (RPA_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM7_ECTSI)

HSP 1 Score: 376 bits (965), Expect = 3.960e-128
Identity = 195/267 (73.03%), Postives = 224/267 (83.90%), Query Frame = 0
Query:   23 KQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNG--------MLNN-NQGGGDAKGFSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRSTET 280
            +QS+LSVN+KQV LESEM+NQD+GAKIDG DV+ +K+VGCIVE+D+ASTNTEYT+EDTTGRLKVK FHNDGEG NDR+AEKRAR Q+GTYVRVFGNVRSWKDDRHSVAY + P+ DM+EVT H L+TIYTHLFNTKGPLPGK S  GGA VAQPMNGVGSPGF+G SSQ GFTSPGN         M NN N     +KGF+ +QQ+VHD F+GAD+EQGRS+ +VA++L   GIS+ DV  AVQFLS EGHLYSTIDDDHYRSTET
Sbjct:   64 QQSLLSVNIKQV-LESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKMFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPITDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGVGSPGFNGGSSQHGFTSPGNNXXXXXXXXMYNNSNMDPEGSKGFTPIQQKVHDQFLGADEEQGRSIAEVADSLTREGISRTDVSTAVQFLSSEGHLYSTIDDDHYRSTET 329          
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A835YU42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU42_9STRA)

HSP 1 Score: 186 bits (473), Expect = 3.030e-54
Identity = 114/270 (42.22%), Postives = 165/270 (61.11%), Query Frame = 0
Query:   17 GQRSKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPL---PGKGSVG-GGAAVAQPMN--GVGSPGF--HGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 278
            G+ S+EKQSI+ + +KQV LES+  N D   K+DGV++  V++VGCI+++++ STN  + IED TGR+  K F    E       E+R+R + G YV V G ++ W+D  H  A+ I P++D N++T H+L+ IY HL NT GPL   PG  + G GGAA AQPM     GSPGF   G ++QQG      G  N   G  D+   + + Q++ D+F    +  G S+   A+ L+ +GI   D+ DAV +LS EGH+Y+T+DD HY+ST
Sbjct:   28 GRPSREKQSIMPLTIKQV-LESQHDNPDDKPKVDGVEIVHVRLVGCIIDINEHSTNAVFKIEDGTGRIDAKVFIEQDES--QLQTERRSRCREGVYVAVVGQIKRWQDKLHVHAFDIRPLEDTNQITQHFLEAIYAHLHNTLGPLRKAPGGAAGGIGGAAGAQPMAVANYGSPGFARQGGAAQQGNY----GAFNGGGGEMDSNNLAPLHQKLLDIFQADTNPHGLSLDYCADVLKPQGIGYDDIRDAVVYLSSEGHIYTTVDDFHYKST 290          
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A7S3AZ16_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AZ16_9EUKA)

HSP 1 Score: 139 bits (351), Expect = 7.650e-36
Identity = 96/260 (36.92%), Postives = 144/260 (55.38%), Query Frame = 0
Query:   21 KEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFI--GADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 278
            ++KQS++   +KQ+      SN +A   IDG D+  + +VG I   D+ +TN +Y+++D T  + VK +  D E  ++   E+RA+ + G  VRV G +R++ + +  VAY I+P+ + NE T H++D ++THL  TKG   G G V  G     PMNG G     G + QQG         N   GG  A     V   V   F   G   + G ++ DV  A+  + IS+Q V +AV+FL+ EGHLYSTIDDDH+++T
Sbjct:   68 RDKQSLIPATIKQLKNAVPASNGEASFMIDGADLHQITIVGLITSADEQATNLQYSVDDGTDHIMVKMWI-DAEA-DESFQERRAQWKEGVVVRVIGQLRAFNNSKSVVAYSIQPITNFNEYTFHFIDVVHTHLKATKGKPVGVG-VPRGIMGGFPMNGGG---MGGPAMQQGMAQA---APNVPTGGAPA----DVNNLVLSFFKTKGEASDMGCTIGDVVGAVSAQNISEQRVREAVEFLTNEGHLYSTIDDDHFKAT 314          
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A7S0HR69_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HR69_9EUKA)

HSP 1 Score: 139 bits (351), Expect = 1.190e-35
Identity = 96/258 (37.21%), Postives = 144/258 (55.81%), Query Frame = 0
Query:   23 KQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSA-EKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIG-ADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 278
            KQS+    +KQ+   +  S  D G  +DG D+  V +VG I   D+ +TN +YT++D T  + VK +    +   D +A EKRA+ + G  VRV G +R++   R  VA+ I+P+ D NE T H+++ ++THL NTKG    +G+   GA +A    GV + G  G  + QG    G G     Q G  A G +S Q  V   F   A+ + G +++D  NA+  +G++   V  AV+ L  EGHLYSTIDD+HY++T
Sbjct:   88 KQSLAPCTIKQLK-NAPASGGDNGFSVDGKDLHQVTIVGLITHADEQNTNLQYTVDDGTDSINVKMWI---DAATDEAAMEKRAQWREGAVVRVIGQMRAFNQVRSIVAFHIQPLTDFNEYTFHFIEVVHTHLRNTKGAAAEQGAPAAGAGMAGASMGV-AGGMAGGMAPQG----GAGFAP--QAGFAANGAASTQDTVMKYFTSYAETDIGCTISDCVNAMAPQGVTDAQVRTAVEALVNEGHLYSTIDDEHYKAT 334          
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: F0YKH3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKH3_AURAN)

HSP 1 Score: 132 bits (333), Expect = 5.890e-34
Identity = 94/261 (36.02%), Postives = 140/261 (53.64%), Query Frame = 0
Query:   21 KEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQI-GTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFI--GADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 278
            ++KQS++ + +KQV+  ++ + +D G  +DG +V  V+VVG I+  D   T   YTIED TG L+   + N  E G   + E+RA   + G+YV V G ++ +    +  AY + P++D NE+THHYL+ IY+H   T     G    GGGAA      G  +P   G  S     + G+G            G ++ Q +V + +   G  DE G +V  VA++L    +    V   V+FLS EGHLYSTIDDDH++ST
Sbjct:    2 RDKQSLIPMTIKQVLSATKAAGEDDGFAVDGREVNQVRVVGNILRQDKKETKHVYTIEDQTGMLECTMWVNQEEAG--ATVEERAEKMVNGSYVCVIGGLKEYNGKLNVSAYDVRPIEDFNEITHHYLEAIYSHAKQTNAIKTG----GGGAAAPASAFGAFNP-SGGRVSADAMDTSGDG------------GMTADQTKVFNFYTTEGTGDE-GCNVNSVASSLA---MDLNQVKHIVEFLSSEGHLYSTIDDDHHKST 239          
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A7S2B4J1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B4J1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.070e-33
Identity = 92/237 (38.82%), Postives = 129/237 (54.43%), Query Frame = 0
Query:   44 DAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPL-PGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIG-ADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 278
            D+  K+DG D+  +K+VG I+ +++ ST   Y IED TG +  K + + G+   D  AEKRA  + G+YVR  G +R ++ +     Y + PV D NE+THH L+ IY HL NTKG    G+              GVG  GF+  +      S    M ++ QG GD   FS+VQ +V   F      E+G S+ D   +L   G   Q V + V+FLS EGHLYSTIDD+H++ST
Sbjct:   11 DSNYKVDGQDIHQLKLVGNILSIEEHSTYAVYKIEDGTGVVDCKLWIDAGDSEAD--AEKRALCRQGSYVRAVGVLRDFQGNASVQLYDMRPVTDHNEITHHMLEAIYVHLQNTKGSKNAGQPXXXXXXXXXXXXXGVG--GFNAPAVNTNLNSA---MASDGQGSGD---FSTVQTEVLAYFTNNGSGEEGASINDAVKSLCANGHHDQAVRETVEFLSNEGHLYSTIDDEHFKST 237          
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A8J2SFF3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SFF3_9STRA)

HSP 1 Score: 130 bits (328), Expect = 8.020e-33
Identity = 96/269 (35.69%), Postives = 141/269 (52.42%), Query Frame = 0
Query:   13 GGSGGQRSKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGD-AKGFSSVQQQVHDMFI--GADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 278
            GG   ++ ++KQ++  V +KQ+    +    D G KID  ++  V+VV C+   +   T   Y IED TG ++V  + ND +  +  + +K A+   G YV V GN++ +       AY + PV+D N+VTHHYL+ IY H         GK  V  GAA A   + +   GFH ++  Q              GG D A G +S+Q++V D +   G  DE G +   VA +L   G+    V  AV+FLS EGHLYSTID+DH++ST
Sbjct:   31 GGEKEKKPRDKQTLTPVTIKQLQSAEKGVGDDDGYKIDNAEIHSVRVVACVQTDEVRETKATYNIEDGTGSVEVTFWLNDAQDEDSWARQKLAKMTPGAYVVVHGNIKEYDGRLTISAYDMRPVEDFNQVTHHYLEAIYVHAKRV-----GKIQVSSGAAPAAKRDSM--AGFHPTTHGQSAA-----------GGADGADGMTSLQKRVLDYYTENGTGDE-GCNTDSVAASL---GLDLGQVKAAVEFLSSEGHLYSTIDEDHHKST 277          
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A6G0IC02_LARCR (Replication protein A 32 kDa subunit n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0IC02_LARCR)

HSP 1 Score: 130 bits (326), Expect = 1.440e-32
Identity = 101/286 (35.31%), Postives = 150/286 (52.45%), Query Frame = 0
Query:    1 MTGGAVDSPAG----GGGSGGQRSKEKQS--ILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGR-LKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRSTE 279
            M GG   SP G        GG++    +S  I+   V Q++     S  D   KI  V+VA V +VG I   D + TN +Y ++D TG  + +K + +  +   D +         GTYV+V GN+RS+++ R  VA+ + P++DMNE+T H L+ +  H+  +K P    G+ GG ++   PM+    PG     S +G  S  N M NN        G S+ Q QV  +     D+QG S+ D+   LR  GIS   +  AV+FLS EGH++STID+DHY+ST+
Sbjct:   12 MGGGYTQSPGGFASPAASQGGEKKGRTRSSQIIPCTVSQLM---SASQADEAFKIGEVEVAQVTIVGIIRSTDKSMTNIQYKVDDMTGAPMDIKQWVDTEDPSMDSTVL-----PPGTYVKVSGNLRSFQNHRSVVAFSVRPLEDMNEITSHMLEVVQAHMVLSK-PQSTPGTGGGTSSNVTPMS---RPGME---SMRGSYSGANDMANN--------GLSANQNQVLSLIRSCPDQQGISIQDLK--LRLSGISLGVIKQAVEFLSNEGHIFSTIDEDHYKSTD 272          
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A3Q3VTT8_MOLML (Replication protein A2 n=5 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3VTT8_MOLML)

HSP 1 Score: 129 bits (324), Expect = 2.830e-32
Identity = 101/287 (35.19%), Postives = 151/287 (52.61%), Query Frame = 0
Query:    1 MTGGAVDSPAG-------GGGSGGQRSKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGR-LKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRSTE 279
            M GG   SP G        GG    R++  Q I+   V Q++L S++   D   K+  V+VA V +VG I   D + TN +Y ++D TG  + VK + +  + G D +         GTYV+V GN+RS+++ R  VA+ + P++DMNE+T H L+ +  H+  +K P    G+ GG ++   P++  GS    G     G+    N M NN        G S+ Q QV  +  G    QG S+ D+   L G  IS   +  AV+FLS EGH++STID+DHY+ST+
Sbjct:   12 MAGGYTQSPGGFASPALSQGGEKKGRTRTTQ-IIPCTVSQLMLASQV---DEAFKVGDVEVAQVTIVGVIRNTDKSMTNIQYKVDDMTGAPMDVKQWVDTEDPGVDNTVL-----PPGTYVKVSGNLRSFQNHRSVVAFRVRPLEDMNEITSHMLEVVQAHMVLSK-PQSMSGAGGGMSSNVMPVSRPGSENMGG-----GYAGANN-MANN--------GLSANQNQVLSLIRGCPYPQGISIQDLKQRLSG--ISLSVIKQAVEFLSNEGHIFSTIDEDHYKSTD 272          
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: C1MT71_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MT71_MICPC)

HSP 1 Score: 129 bits (324), Expect = 2.830e-32
Identity = 97/284 (34.15%), Postives = 149/284 (52.46%), Query Frame = 0
Query:    5 AVDSPAGGGGSGGQRSKEK-QSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNF--HNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFN-----TKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIGADD--EQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 278
            A  + A GG   G RS+ + +S++ + VKQ+    + SN D   K++G +V  + ++G IV+ +D+ST+  YTI+D TG  +VK +   +D +G N   AE +    +G YVRV+G++R+++  R  +A+ + PV D NE+T+H+L+ +Y +  N     T G  P   ++GG +A A P                   S G         GG      S   QV  +F G     E G  V DV   L GR  ++  V ++V+ L  EGHLYSTIDDDH++ST
Sbjct:   20 AGQTAAAGGXDXGARSQGRAESLVPLTVKQLKESIDASNVDDAFKVNGEEVHNLTLLGKIVKANDSSTSLMYTIDDGTGTCEVKIWVDADDADGQNQNKAEWK----VGAYVRVYGHLRAFQGQRGVIAFNMRPVTDFNEITYHFLEVVYCNSHNASRAATAGAAPATAAMGGDSAYAAP-------------------SAGXXXXXXXXXGG------SANDQVFAIFNGPQGHGESGVRVDDVVTQLNGR-FTEAQVRESVEHLVNEGHLYSTIDDDHFKST 273          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPM7_ECTSI3.960e-12873.03RPA_C domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835YU42_9STRA3.030e-5442.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3AZ16_9EUKA7.650e-3636.92Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0HR69_9EUKA1.190e-3537.21Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
F0YKH3_AURAN5.890e-3436.02Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2B4J1_9STRA2.070e-3338.82Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2SFF3_9STRA8.020e-3335.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6G0IC02_LARCR1.440e-3235.31Replication protein A 32 kDa subunit n=1 Tax=Larim... [more]
A0A3Q3VTT8_MOLML2.830e-3235.19Replication protein A2 n=5 Tax=Percomorphaceae Tax... [more]
C1MT71_MICPC2.830e-3234.15Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014646Replication factor A protein 2PIRSFPIRSF036949RPA32coord: 1..279
e-value: 1.1E-52
score: 176.8
NoneNo IPR availableGENE3D2.40.50.140coord: 18..158
e-value: 1.3E-36
score: 127.2
IPR014892Replication protein A, C-terminalPFAMPF08784RPA_Ccoord: 153..273
e-value: 3.3E-14
score: 53.4
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 207..280
e-value: 6.6E-21
score: 75.9
IPR040260Replication factor A protein-likePANTHERPTHR13989REPLICATION PROTEIN A-RELATEDcoord: 9..278
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 212..279
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 39..158

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:380500..385683 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17179.1mRNA_C-linearis_contig99.17179.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig99 380452..386358 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig99.17179.1 ID=prot_C-linearis_contig99.17179.1|Name=mRNA_C-linearis_contig99.17179.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=281bp
MTGGAVDSPAGGGGSGGQRSKEKQSILSVNVKQVVLESEMSNQDAGAKID
GVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRS
AEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTI
YTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNG
MLNNNQGGGDAKGFSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQ
QDVLDAVQFLSGEGHLYSTIDDDHYRSTET*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014646Rfa2/RPA32
IPR014892RPA_C
IPR036388WH-like_DNA-bd_sf
IPR040260RFA2-like
IPR036390WH_DNA-bd_sf
IPR012340NA-bd_OB-fold