mRNA_C-linearis_contig99.17179.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig99.17179.1
Unique Name	mRNA_C-linearis_contig99.17179.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: D8LPM7_ECTSI (RPA_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM7_ECTSI)

HSP 1 Score: 375 bits (964), Expect = 3.020e-124
Identity = 195/267 (73.03%), Postives = 224/267 (83.90%), Query Frame = 1

Query:  115 KQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNG--------MLNN-NQGGGDAKGFSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRSTET 888
            +QS+LSVN+KQV LESEM+NQD+GAKIDG DV+ +K+VGCIVE+D+ASTNTEYT+EDTTGRLKVK FHNDGEG NDR+AEKRAR Q+GTYVRVFGNVRSWKDDRHSVAY + P+ DM+EVT H L+TIYTHLFNTKGPLPGK S  GGA VAQPMNGVGSPGF+G SSQ GFTSPGN         M NN N     +KGF+ +QQ+VHD F+GAD+EQGRS+ +VA++L   GIS+ DV  AVQFLS EGHLYSTIDDDHYRSTET
Sbjct:   64 QQSLLSVNIKQV-LESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKMFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPITDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGVGSPGFNGGSSQHGFTSPGNNXXXXXXXXMYNNSNMDPEGSKGFTPIQQKVHDQFLGADEEQGRSIAEVADSLTREGISRTDVSTAVQFLSSEGHLYSTIDDDHYRSTET 329

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BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A835YU42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU42_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.260e-51
Identity = 114/270 (42.22%), Postives = 165/270 (61.11%), Query Frame = 1

Query:   97 GQRSKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPL---PGKGSVG-GGAAVAQPMN--GVGSPGF--HGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
            G+ S+EKQSI+ + +KQV LES+  N D   K+DGV++  V++VGCI+++++ STN  + IED TGR+  K F    E       E+R+R + G YV V G ++ W+D  H  A+ I P++D N++T H+L+ IY HL NT GPL   PG  + G GGAA AQPM     GSPGF   G ++QQG      G  N   G  D+   + + Q++ D+F    +  G S+   A+ L+ +GI   D+ DAV +LS EGH+Y+T+DD HY+ST
Sbjct:   28 GRPSREKQSIMPLTIKQV-LESQHDNPDDKPKVDGVEIVHVRLVGCIIDINEHSTNAVFKIEDGTGRIDAKVFIEQDES--QLQTERRSRCREGVYVAVVGQIKRWQDKLHVHAFDIRPLEDTNQITQHFLEAIYAHLHNTLGPLRKAPGGAAGGIGGAAGAQPMAVANYGSPGFARQGGAAQQGNY----GAFNGGGGEMDSNNLAPLHQKLLDIFQADTNPHGLSLDYCADVLKPQGIGYDDIRDAVVYLSSEGHIYTTVDDFHYKST 290

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BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A7S3AZ16_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AZ16_9EUKA)

HSP 1 Score: 139 bits (351), Expect = 1.070e-33
Identity = 96/261 (36.78%), Postives = 145/261 (55.56%), Query Frame = 1

Query:  106 SKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFI--GADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
            +++KQS++   +KQ+      SN +A   IDG D+  + +VG I   D+ +TN +Y+++D T  + VK +  D E  ++   E+RA+ + G  VRV G +R++ + +  VAY I+P+ + NE T H++D ++THL  TKG   G G V  G     PMNG G     G + QQG         N   GG  A     V   V   F   G   + G ++ DV  A+  + IS+Q V +AV+FL+ EGHLYSTIDDDH+++T
Sbjct:   67 NRDKQSLIPATIKQLKNAVPASNGEASFMIDGADLHQITIVGLITSADEQATNLQYSVDDGTDHIMVKMWI-DAEA-DESFQERRAQWKEGVVVRVIGQLRAFNNSKSVVAYSIQPITNFNEYTFHFIDVVHTHLKATKGKPVGVG-VPRGIMGGFPMNGGG---MGGPAMQQGMAQA---APNVPTGGAPA----DVNNLVLSFFKTKGEASDMGCTIGDVVGAVSAQNISEQRVREAVEFLTNEGHLYSTIDDDHFKAT 314

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BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A7S0HR69_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HR69_9EUKA)

HSP 1 Score: 139 bits (350), Expect = 2.300e-33
Identity = 96/258 (37.21%), Postives = 144/258 (55.81%), Query Frame = 1

Query:  115 KQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSA-EKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIG-ADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
            KQS+    +KQ+   +  S  D G  +DG D+  V +VG I   D+ +TN +YT++D T  + VK +    +   D +A EKRA+ + G  VRV G +R++   R  VA+ I+P+ D NE T H+++ ++THL NTKG    +G+   GA +A    GV + G  G  + QG    G G     Q G  A G +S Q  V   F   A+ + G +++D  NA+  +G++   V  AV+ L  EGHLYSTIDD+HY++T
Sbjct:   88 KQSLAPCTIKQLK-NAPASGGDNGFSVDGKDLHQVTIVGLITHADEQNTNLQYTVDDGTDSINVKMWI---DAATDEAAMEKRAQWREGAVVRVIGQMRAFNQVRSIVAFHIQPLTDFNEYTFHFIEVVHTHLRNTKGAAAEQGAPAAGAGMAGASMGV-AGGMAGGMAPQG----GAGFAP--QAGFAANGAASTQDTVMKYFTSYAETDIGCTISDCVNAMAPQGVTDAQVRTAVEALVNEGHLYSTIDDEHYKAT 334

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BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: F0YKH3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKH3_AURAN)

HSP 1 Score: 132 bits (333), Expect = 6.130e-32
Identity = 94/262 (35.88%), Postives = 141/262 (53.82%), Query Frame = 1

Query:  106 SKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQI-GTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFI--GADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
            +++KQS++ + +KQV+  ++ + +D G  +DG +V  V+VVG I+  D   T   YTIED TG L+   + N  E G   + E+RA   + G+YV V G ++ +    +  AY + P++D NE+THHYL+ IY+H   T     G    GGGAA      G  +P   G  S     + G+G            G ++ Q +V + +   G  DE G +V  VA++L    +    V   V+FLS EGHLYSTIDDDH++ST
Sbjct:    1 ARDKQSLIPMTIKQVLSATKAAGEDDGFAVDGREVNQVRVVGNILRQDKKETKHVYTIEDQTGMLECTMWVNQEEAG--ATVEERAEKMVNGSYVCVIGGLKEYNGKLNVSAYDVRPIEDFNEITHHYLEAIYSHAKQTNAIKTG----GGGAAAPASAFGAFNP-SGGRVSADAMDTSGDG------------GMTADQTKVFNFYTTEGTGDE-GCNVNSVASSLA---MDLNQVKHIVEFLSSEGHLYSTIDDDHHKST 239

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BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A7S2B4J1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B4J1_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.460e-31
Identity = 92/237 (38.82%), Postives = 129/237 (54.43%), Query Frame = 1

Query:  178 DAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPL-PGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIG-ADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
            D+  K+DG D+  +K+VG I+ +++ ST   Y IED TG +  K + + G+   D  AEKRA  + G+YVR  G +R ++ +     Y + PV D NE+THH L+ IY HL NTKG    G+              GVG  GF+  +      S    M ++ QG GD   FS+VQ +V   F      E+G S+ D   +L   G   Q V + V+FLS EGHLYSTIDD+H++ST
Sbjct:   11 DSNYKVDGQDIHQLKLVGNILSIEEHSTYAVYKIEDGTGVVDCKLWIDAGDSEAD--AEKRALCRQGSYVRAVGVLRDFQGNASVQLYDMRPVTDHNEITHHMLEAIYVHLQNTKGSKNAGQPXXXXXXXXXXXXXGVG--GFNAPAVNTNLNSA---MASDGQGSGD---FSTVQTEVLAYFTNNGSGEEGASINDAVKSLCANGHHDQAVRETVEFLSNEGHLYSTIDDEHFKST 237

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BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A8J2SFF3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SFF3_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.470e-30
Identity = 94/264 (35.61%), Postives = 139/264 (52.65%), Query Frame = 1

Query:  100 QRSKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGD-AKGFSSVQQQVHDMFI--GADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
            ++ ++KQ++  V +KQ+    +    D G KID  ++  V+VV C+   +   T   Y IED TG ++V  + ND +  +  + +K A+   G YV V GN++ +       AY + PV+D N+VTHHYL+ IY H         GK  V  GAA A   + +   GFH ++  Q              GG D A G +S+Q++V D +   G  DE G +   VA +L   G+    V  AV+FLS EGHLYSTID+DH++ST
Sbjct:   36 KKPRDKQTLTPVTIKQLQSAEKGVGDDDGYKIDNAEIHSVRVVACVQTDEVRETKATYNIEDGTGSVEVTFWLNDAQDEDSWARQKLAKMTPGAYVVVHGNIKEYDGRLTISAYDMRPVEDFNQVTHHYLEAIYVHAKRV-----GKIQVSSGAAPAAKRDSM--AGFHPTTHGQSAA-----------GGADGADGMTSLQKRVLDYYTENGTGDE-GCNTDSVAASL---GLDLGQVKAAVEFLSSEGHLYSTIDEDHHKST 277

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BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A7S0DLE7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DLE7_9EUKA)

HSP 1 Score: 129 bits (324), Expect = 2.310e-30
Identity = 93/265 (35.09%), Postives = 132/265 (49.81%), Query Frame = 1

Query:   97 GQRSKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMF--IGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRSTE 885
            GQ+    QS+  +  KQ       +   +   IDG  +A V+VVG I+ +D  ST + Y I+D +G+L VK + ND         ++  R  I  YVRV G +R     R  VA+ I+P+  MNE+T H LD I+THL NTKGPL  K +       A   N +             +   G+ M   +      +G  +VQQ+V   F  IG+  EQG SV +V   LR        + +AV FLS EGHLYST+D+ H++ T+
Sbjct:   34 GQQKGRNQSMTPITCKQA--REAKAIDGSSFTIDGQTIAQVRVVGLILNVDHESTQSSYGIDDGSGQLTVKMYRNDDA----EDLDQHCREDI--YVRVVGTMRELAGQRIVVAFQIQPLKSMNEITLHNLDVIHTHLRNTKGPLESKKN-----RKAAANNNL-------------YNEHGDSMYKKSSSEAQVEGMDNVQQEVLQAFKSIGSAKEQGASVNEVIQRLRK--FDPVKIREAVDFLSNEGHLYSTLDETHFKCTD 270

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BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: K3W659_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W659_GLOUD)

HSP 1 Score: 130 bits (326), Expect = 2.660e-30
Identity = 86/276 (31.16%), Postives = 142/276 (51.45%), Query Frame = 1

Query:  106 SKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKG-----------------FSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
            S++ Q++L +  KQ  L S  ++ D   +ID  +V  VK+VG +  +   STN  + ++D TG +  + F +  +   D +  + A+ + G YVRV GN+R++++     A+ + P++D NE+THH+LD IY H +NTKGPL   G   G  A   P+ G          S  GF +P  G    NQG     G                 FS  Q+ + D+      ++G  +  +   LRG+ +S+  +  A+ +L+ EGH+YSTID++H++ T
Sbjct:   44 SRDAQTLLPITAKQ--LASRNASDDDVIRIDNQEVTNVKMVGILSNVVPHSTNVNFQLDDGTGIIDGRMFLHADDA--DLAESEIAKLRDGIYVRVVGNLRTFQEKVSLSAFSVTPIEDFNEITHHFLDAIYVHCYNTKGPLQSSGGAAGANAFGTPVKG----------SSSGFDAPLAGQQTWNQGSSTYLGHSGSMGGGMDYGMMDSNFSPEQKAILDVLGTCTSDRGLKIDQIFLELRGQ-MSEDQLRGALNYLTSEGHVYSTIDENHFKRT 304

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BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A6G0IC02_LARCR (Replication protein A 32 kDa subunit n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0IC02_LARCR)

HSP 1 Score: 129 bits (323), Expect = 3.510e-30
Identity = 89/240 (37.08%), Postives = 132/240 (55.00%), Query Frame = 1

Query:  169 SNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGR-LKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRSTE 885
            S  D   KI  V+VA V +VG I   D + TN +Y ++D TG  + +K + +  +   D +         GTYV+V GN+RS+++ R  VA+ + P++DMNE+T H L+ +  H+  +K P    G+ GG ++   PM+    PG     S +G  S  N M NN        G S+ Q QV  +     D+QG S+ D+   LR  GIS   +  AV+FLS EGH++STID+DHY+ST+
Sbjct:   55 SQADEAFKIGEVEVAQVTIVGIIRSTDKSMTNIQYKVDDMTGAPMDIKQWVDTEDPSMDSTVL-----PPGTYVKVSGNLRSFQNHRSVVAFSVRPLEDMNEITSHMLEVVQAHMVLSK-PQSTPGTGGGTSSNVTPMS---RPGME---SMRGSYSGANDMANN--------GLSANQNQVLSLIRSCPDQQGISIQDLK--LRLSGISLGVIKQAVEFLSNEGHIFSTIDEDHYKSTD 272

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot

BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
D8LPM7_ECTSI	3.020e-124	73.03	RPA_C domain-containing protein n=2 Tax=Ectocarpus...	[more]
A0A835YU42_9STRA	1.260e-51	42.22	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S3AZ16_9EUKA	1.070e-33	36.78	Hypothetical protein n=1 Tax=Haptolina ericina Tax...	[more]
A0A7S0HR69_9EUKA	2.300e-33	37.21	Hypothetical protein n=2 Tax=Phaeocystis antarctic...	[more]
F0YKH3_AURAN	6.130e-32	35.88	Uncharacterized protein (Fragment) n=1 Tax=Aureoco...	[more]
A0A7S2B4J1_9STRA	1.460e-31	38.82	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A8J2SFF3_9STRA	1.470e-30	35.61	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A7S0DLE7_9EUKA	2.310e-30	35.09	Hypothetical protein n=1 Tax=Amorphochlora amoebif...	[more]
K3W659_GLOUD	2.660e-30	31.16	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
A0A6G0IC02_LARCR	3.510e-30	37.08	Replication protein A 32 kDa subunit n=1 Tax=Larim...	[more]

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Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	379.8
Seed ortholog evalue	1.1e-102
Seed eggNOG ortholog	2880.D8LPM7
Preferred name	RPA2
KEGG rclass	RC02795
KEGG ko	ko:K02999,ko:K10739,ko:K10741
KEGG Reaction	R00435,R00441,R00442,R00443
KEGG Pathway	ko00230,ko00240,ko01100,ko03020,ko03030,ko03420,ko03430,ko03440,ko03460,map00230,map00240,map01100,map03020,map03030,map03420,map03430,map03440,map03460
KEGG Module	M00182,M00288
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000018,GO:0000075,GO:0000076,GO:0000077,GO:0000082,GO:0000228,GO:0000278,GO:0000280,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000781,GO:0000785,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005662,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006268,GO:0006269,GO:0006270,GO:0006278,GO:0006281,GO:0006282,GO:0006283,GO:0006284,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006302,GO:0006310,GO:0006312,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010468,GO:0010564,GO:0010569,GO:0010605,GO:0010629,GO:0010833,GO:0010948,GO:0016043,GO:0016070,GO:0016458,GO:0016567,GO:0016604,GO:0016605,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019899,GO:0019902,GO:0019903,GO:0019985,GO:0022402,GO:0022414,GO:0022607,GO:0030491,GO:0030894,GO:0031323,GO:0031334,GO:0031570,GO:0031571,GO:0031625,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032392,GO:0032446,GO:0032508,GO:0032774,GO:0032991,GO:0032993,GO:0033036,GO:0033260,GO:0033365,GO:0033554,GO:0033683,GO:0034502,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0036211,GO:0036297,GO:0042162,GO:0042276,GO:0042592,GO:0042769,GO:0043047,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043412,GO:0043565,GO:0043596,GO:0043601,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044786,GO:0044819,GO:0044843,GO:0045184,GO:0045786,GO:0045930,GO:0046483,GO:0047485,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051095,GO:0051096,GO:0051128,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051606,GO:0051641,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070727,GO:0070987,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090734,GO:0097159,GO:0098505,GO:0098687,GO:0098847,GO:0140013,GO:1900034,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901976,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902295,GO:1902318,GO:1902806,GO:1902807,GO:1902969,GO:1902981,GO:1903046,GO:1903047,GO:2000001,GO:2000045,GO:2000134,GO:2000779,GO:2001020
EggNOG free text desc.	DNA metabolic process
EggNOG OGs	COG5235@1,KOG3108@2759
Ec32 ortholog description	Nucleic acid-binding, OB-fold
Ec32 ortholog	Ec-06_004810.1
EC	2.7.7.6
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03400
Exons	8
Model size	1566
Cds size	843
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig99.17179.1	prot_C-linearis_contig99.17179.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig99 380500..385683 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930851.3133702-UTR-C-linearis_contig99:380451..380499	1622930851.3133702-UTR-C-linearis_contig99:380451..380499	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig99 380452..380499 +
1690881282.2551746-UTR-C-linearis_contig99:380451..380499	1690881282.2551746-UTR-C-linearis_contig99:380451..380499	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig99 380452..380499 +
1622930851.5072918-UTR-C-linearis_contig99:385683..386358	1622930851.5072918-UTR-C-linearis_contig99:385683..386358	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig99 385684..386358 +
1690881282.3642278-UTR-C-linearis_contig99:385683..386358	1690881282.3642278-UTR-C-linearis_contig99:385683..386358	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig99 385684..386358 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig99:380452..386358+
coding sequence from alignment at C-linearis_contig99:380452..386358+

protein sequence of mRNA_C-linearis_contig99.17179.1

>prot_C-linearis_contig99.17179.1 ID=prot_C-linearis_contig99.17179.1|Name=mRNA_C-linearis_contig99.17179.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=281bp
MTGGAVDSPAGGGGSGGQRSKEKQSILSVNVKQVVLESEMSNQDAGAKID
GVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRS
AEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTI
YTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNG
MLNNNQGGGDAKGFSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQ
QDVLDAVQFLSGEGHLYSTIDDDHYRSTET*

mRNA from alignment at C-linearis_contig99:380452..386358+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig99.17179.1 ID=mRNA_C-linearis_contig99.17179.1|Name=mRNA_C-linearis_contig99.17179.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5907bp|location=Sequence derived from alignment at C-linearis_contig99:380452..386358+ (Chordaria linearis ClinC8C monoicous)
GGCGGTGGCGGGTTCGGGTCTCCTTCGGGAGGAGGTGGGGGCGGGTACAT
GACCGGGGGCGCCGTGGACAGCCCGGCGGGTGGTGGTGGGAGCGGGGGTC
AACGGAGCAAGGAGAAGCAGTCCATCCTCTCGGTCAACGTCAAACAGGTG
GTAGTTAAATATCATATGTAGAAGTATTTATACATCGTACCGTGGTGTGT
GTTTCCGTTGTTGCTATGATATGATATGATACGGCACCTATTTTTCTTGC
CAATCAAACCAAACCCATGAAAGCGCGAGAGTCATGTGTCATGTGTACGG
ACAGCATTGGGGTGAATCGGGCGCAAGAGCGGGCCACGGGATTTAAAAAA
AAATCGGCGGCCTGTGTAGTTCTGTTGTTCGCTCTCTCCCGCTTAGTAGT
TTTGCCCAGCCTTGATCGTGATCGTCGGTGGACCAGACCAGACCAGACCA
ACCTCTCCCCAGAAACCCCTCAGCTTTGATTTCATTTCATGTGCGTGTTT
ATTAGCGTCGACCACACCGACCGACTTACCAAAGAGAAGATGCCAGTCTT
ATCAAAGAGAAGATGCCAGTCCTACCAAAGAGAAGATGCCAGTCTTACCA
AAGAGAAGATGCCAGTCTTACCAAAGAGAAGATGCCAGTCTTATCAAAGA
GAAGATGCCAGTCTTATCAAAGAGAAGATGCCAGTCTTACCAAAGAGAAG
ATGCCAGTCTTATCAAAGAGAAGGTGCCAGTCTTATCAAAGAGAAGGTGC
CAGTCTTACCAAAGAGAAGATGCCAGTCTTACCAAAGAGAAGATGCCAGT
CTTATCAAAGAGGAGGTGCCAGTTTTATCAAAGATAAGATGCCAGTTTTA
TCAAAGAGAAGATGCCAGTCTTTCCAAAGAGAAGATGCCAGTCTTACCAA
AGAGAAGATACCAGTTTTATCAAAGAGGAGGTGCCAGTTTTATCAAAGAT
AAGATGCCAGTCTTACCAAAGAGAAGATGCCAGTTTTATCAAAGAGAAGG
TGCCAGTCTTATCAAAGAGAAGATGCCAGTTTTATCAAAGAGAAGGTGCC
AGTCTTATCAAAGAGAAGATGCCAGTCTTACCAAAGAGAAGATGCCAGTC
TTACCAAAGAGAAGATGCCAGTTTTATGAAAGAGAAGGTGCCAGTCTTAT
CAAAGATAAGATGCCAGTCTTACCGAAGAGAAGATGCCAGTTTTATCAAA
GAGAAGGTGCCAGTCTTATCAAAGAGGAGATGCCAGTCTTATCAAAGAGA
AGATGCCAGTCTTATCAAAGAGAAGATGCCAGTCTTACCAAAGAGAGGAT
GCCAGTCTTATCAAAGAGGAGATGCCAGTCTTATCAAAGAGGAGATGCCA
GTCTTACCAAAGAGCGGGCACGAAATTAAACCACCGTGTAACGCTGCTCT
GTTGATACGGTAGGTGCTGGAGTCGGAGATGTCGAACCAGGACGCTGGCG
CCAAGATCGACGGGGTCGATGTTGCACTGGTAAGAAAACAAGTATCGCGA
CCCTATAATTGCTCAGTGTAGTGTAGTGTAGCGTAGTGTACCAGTTATGG
TTGGGGGTCACGTTTGGCGAAGCGGCATGGGGCATGGGGCATGGGGGGGC
CTTCTTGGACGCGCCGTTTGTAGATAGCGCCGGAGGGAATCCATCACCGT
AGGAAAGGCAGGGCTTGCTTTGATCTCCTTTGATCTCCCCGACAGCTTTC
CGAGCAAAGGCGCTCGACTCGATTTGGCTCGACTTGGCTTGGCTTGGCTT
GACTTCCGTGCCCTTCGCCTCTCCTCTGCCGACAAATCGGGCGTGGAAGT
GTGACGAAATCCTCATGCTCCTAGACCCTTGCGCCCCGAAGAGACCAGCA
TCGCGGTGCAAGTAGACAGTGCAAGTAGGGAGCACGAGACTGTGTGAAGA
ATGACAGTCACGGGGAATGAGGAATGGGAAAGCGTGGCTATGTTGAGACA
AAGAGCGGCTCTAAGGTATGGAAAGAGGAAGAGTTGTAAAATGTACTCGT
AGAAAGATTAGATTCAGATGCAACGCAAGCGTGAGATGCCTCATCTGCTG
GGTACGCGTCTCCCTTTCATGCCCCCTGCCCTTCTTCGAAATGGTAAGTG
CCATACAAAACACGCTCTCTGCGCCGCAATCCAGCCACCATAAGTATTTA
TAAGCGTCACACGCCCCCCCACGCCCCCCCCCCGCCGCGCCGCCGGTTGT
GTTGCCGAACTTTGGAACAAATGTCAATGTTCTTCGACACATATACATAC
CCATACCTACCAACAACGAAACGAAACAAAGGTGAAAGTTGTGGGGTGCA
TCGTGGAAATGGACGATGCTTCCACCAACACCGAGTACACCATCGAGGAC
ACCACTGGCCGCCTCAAGGTACTGTACCTACGTGTGTATGTCATGTGTTG
TCATCTGTTGTCATCTATGTCATCTGTTGGGTTGTTGTCAAGCAGACAAG
ACAGAAGAGAAGACAGAAGAGAAGACTGCTGTTTCAAGTGTTTCGGGGCA
ACTGGGTTGATTGGATGAGACGAAGGAGAAAGCGGCCCCGTTGGCGTTAG
GAGGAAAGGAGAAAACGTAAGGAGGATAATGCCGTCTATTTCATTGGATA
TGATGCAGTCTGTTCCATTGGATATGATGCAGTCTGTTCCATTGGATATG
ATGCCGTCTATTTCATTGGATATGATGCAGTCTGTTTCATTGGATATGAT
GCAGTCTGTTTCATTGGATATGATGCCGTCTGTTTCATTAGATATGATAC
CGTCTATTTCATTGGATATGATGCCGTCTATTTCATTGGATATGATGCAG
ACTGTTTCATTGGATGTGATGCCGTCTGTTTCATTGGATATAACGCTCAT
TCTCACTCTCGCGTGTTTATGTCGGGTCAAGTCCGTAGGTCCCAGCGTGG
TACATTTTGCAGCCAAGGTTCAAGGTTTGCACCATTTGGCTTCAAAGGTT
GGATTTTCGCTGATTCCCTCTGCCCCTTTCTTGTTGTGCCATGTTCTTCG
TATTTTTGTTACTGGTATATTGTGTTATGGTAGGTGAAAAATTTTCACAA
CGATGGGGAGGGCGGGAACGACCGCAGCGCTGAGAAGCGCGCGCGCAACC
AGATCGGGACGTACGTACGGGTCTTTGGCAACGTGAGTGTTCCTCAAAAC
ATTTGGCAACGTCAAAACGTCAAAACATTTCATTTTTTTCTTATCTTCGC
CTTTTGCACTCTTGTTTATGCGTATGCGTATGCGTATGCGTATGCGTATG
TATGTGTATTTACAATGGCCATCTTGGTAGTTTCGGGCTTCAGGTGTGCG
TGCTTGCTAGCGAGGCTTCTTGTGTCTCATGTCAGTCTGCCTGGTGATAA
GAGTCTCACGGCGTGATATTACTTCGAGTATGTATACTCCGTATATTGTT
GTGGTACATACTTGTATGACGTGACACATGTAACAGGTCCGGTCGTGGAA
GGACGACCGGCACTCAGTGGCGTACCTGATCGAGCCGGTGGACGACATGA
ACGAGGTCACACACCACTACCTTGACACCATCTACACGCACCTCTTTAAC
ACGAAGGGGCCGTTGCCCGGGAAGGGATCGGTCGGCGGGGGTGCTGCCGT
GGCACAGCCTATGAACGTGAGCACCGTAACTGCCCCCTATTACCACTTCT
CACGCTACTCATACTTTCGCTGCTGCTGCTGCTGCTGCTGTTGTGAAGAG
TGCGATCTGTGTGGGTTCCTCCTGAGACTTTCTGCAGCTACTGCTGTACG
ATCGTGTCAAGTGTTTTGTTGCATGATGATAGCGCTTTGTTTCGTTTTGA
AAATGTCCGATATCCGAGGCACGCTCCAGGGTCGGCGTGTCTGCTTCAAA
TGCCAAGTGTGGTGGTACTACTGATTTGAGCGTTTTATGTGTGCTGTGCC
CCCCCCCTTTGTGTTGTCGTTTGTGTGTGGGCGTGGTAGGGCGTCGGGTC
GCCTGGGTTCCACGGAAGCAGCAGCCAGCAGGGCTTCACCAGCCCAGGGA
ACGGCATGCTCAACAACAACCAGGGTGGGGGAGATGCGAAGGGCTTCAGT
TCAGTCCAACAACAGGTGTGTATTTGTGTGTTGTGTTGTGTTGTGTTTTC
CGTTTTCCTTCACGAAAGGACCAGCTGAAGTCTCCTCTCCGCCCATCTCG
TACCATTGTGCACTTCGACGTGGATGCCAACCCCCAATTATTAGTGCGCA
CGGCTAGTGCTGTAGCTGAAAGGTTCGAGGTCCGTACCACCGCCGTCCGT
TTCGTCCGTTGGGCCCCCGACGTGGGAGCAGCAATTCTTCATTTTCACCG
CCGGTTTTGACCTCCAGACAAAAATTAGTCGTCTGCCCCTTCCCCCCCTT
CTCTCCCTGCGCGTGCTGTCCGTTGAACGGAAACTACGGAAACGGCAAGG
TGCACGACATGTTCATCGGCGCAGACGACGAGCAAGGGCGGAGCGTGACG
GACGTCGCCAACGCGCTCCGCGGCCGCGGGATCTCGCAACAGGACGTTCT
GTGAGTTGGTAGTTGCCGCCTTGCTGTCTGTCCCTCGGTCTACTGACTGT
TGTATGTTTCTTTGCAGTACAGCTGTATGATATGATATGATATGATATGA
TATGATATGGTATGGTATGATATGATATGATATGATACGAAATATGACCA
ATGACTTTTTTTCTCAAATACATACGTCCCTGGTTTGTGGAAAGCGCTAT
CTAGTCGTGTGTACACAGAGGGAAGAGATTGCCGCGCTCTTCTCGTATTA
AAAATCGAAGGCGAAGCACCGCAGGAGGGGAGGGTGGGGGGCCTCAATGA
GAGGAACCCTTCTGTGTGACCACGGGCTAGAGCTCCTATCCGGCAGAAAT
GCTGTGAGCACTGGTTTGTACGAGTACGTGAAGATAAAAAATAAAATAAA
ATAAAAAAGAGTACGAAGAGGCTGTCTCTCTCACGTACACGCTGACGAGC
AATGTACCCCACCAGGTTGGTCTGCTGCAGCAGTAGAGCCGTCGTGGTGA
CGTGAAAACGTGAAATTGTCAATCCAAGCGCGTATTGCTTTCGCTTTCGC
CGCAACTTAACCTCCCCTCCTCGAAAATTCTCCTCTTGTGCGCGTGTGTT
CTTCTCCCTCTTCGCTCGTTTTCGTTTGTCTTCTCTTGTCTTGTGATCAG
CGACGCGGTACAATTCCTGTCGGGAGAGGGGCACCTATACTCCACAATCG
ACGACGACCACTACCGCTCCACAGAGACCTGAATTGAGTGATGAAGTGTC
TCTCTTCAAAAAGAGCAGACCGCGGTGTTTTATGTGTCTCTTCTTGGGAG
TATGTTGTGTTGCTCAGGGGGGACGAAGAATGGAAATCGCAGTCCAAAAG
ACACGTAGACTGCTGTATCGTTGCATCTTGTCTAGTTTGTTTCCCCCCTG
TAGTGCCTTTCTCTCTCGCCCCCCCCGCGCACTGTCCCCACGCGACACGG
CGGTGGCTTGTTACCGCCTTCTAGCCGCCAAGGGTAGTTTGTATGAACGT
GCCCACCCTTTTTTGCGTGTTCTCGCGCACGGGGTCCATCTAGCCTTGGT
TTGAGTGCCGCGAGAATGTCAAGATCGCCTTGAGAATGTCAGGATCGCGT
GGATCGCGTGGGTTTTGTTCACATCGGAGGCCTAAAACTATGCTATTATA
GTATAGCTTTGTCGTCTTGTCTCGGCCTGGTTCGGGTGTGGGGCGCTTCG
GCTTAAGTTTAGCACATTTAGCACATTTAGCACAACAGCCTGCGAGCTTT
ACGGGTTCGCCTATCCATCTATCCGTGGGAAGCGTTCCTATTCATGTAAA
TTACAAGTAAACACGCTCATTCTTTTTGTTTATGTACATGTACGACGAGG
AAGTGCTCCGAAAGACAACGGTTAAAGGTTTTCATCATCATGATGCAGAC
CATGGAT

Coding sequence (CDS) from alignment at C-linearis_contig99:380452..386358+

>mRNA_C-linearis_contig99.17179.1 ID=mRNA_C-linearis_contig99.17179.1|Name=mRNA_C-linearis_contig99.17179.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1686bp|location=Sequence derived from alignment at C-linearis_contig99:380452..386358+ (Chordaria linearis ClinC8C monoicous)
ATGACCGGGGGCGCCGTGGACAGCCCGGCGGGTGGTGGTGGGAGCGGGGG
TCAACGGAGCAAGGAGAAGCAGTCCATCCTCTCGGTCAACGTCAAACAGG
TGATGACCGGGGGCGCCGTGGACAGCCCGGCGGGTGGTGGTGGGAGCGGG
GGTCAACGGAGCAAGGAGAAGCAGTCCATCCTCTCGGTCAACGTCAAACA
GGTGGTGCTGGAGTCGGAGATGTCGAACCAGGACGCTGGCGCCAAGATCG
ACGGGGTCGATGTTGCACTGGTGCTGGAGTCGGAGATGTCGAACCAGGAC
GCTGGCGCCAAGATCGACGGGGTCGATGTTGCACTGGTGAAAGTTGTGGG
GTGCATCGTGGAAATGGACGATGCTTCCACCAACACCGAGTACACCATCG
AGGACACCACTGGCCGCCTCAAGGTGAAAGTTGTGGGGTGCATCGTGGAA
ATGGACGATGCTTCCACCAACACCGAGTACACCATCGAGGACACCACTGG
CCGCCTCAAGGTGAAAAATTTTCACAACGATGGGGAGGGCGGGAACGACC
GCAGCGCTGAGAAGCGCGCGCGCAACCAGATCGGGACGTACGTACGGGTC
TTTGGCAACGTGAAAAATTTTCACAACGATGGGGAGGGCGGGAACGACCG
CAGCGCTGAGAAGCGCGCGCGCAACCAGATCGGGACGTACGTACGGGTCT
TTGGCAACGTCCGGTCGTGGAAGGACGACCGGCACTCAGTGGCGTACCTG
ATCGAGCCGGTGGACGACATGAACGAGGTCACACACCACTACCTTGACAC
CATCTACACGCACCTCTTTAACACGAAGGGGCCGTTGCCCGGGAAGGGAT
CGGTCGGCGGGGGTGCTGCCGTGGCACAGCCTATGAACGTCCGGTCGTGG
AAGGACGACCGGCACTCAGTGGCGTACCTGATCGAGCCGGTGGACGACAT
GAACGAGGTCACACACCACTACCTTGACACCATCTACACGCACCTCTTTA
ACACGAAGGGGCCGTTGCCCGGGAAGGGATCGGTCGGCGGGGGTGCTGCC
GTGGCACAGCCTATGAACGGCGTCGGGTCGCCTGGGTTCCACGGAAGCAG
CAGCCAGCAGGGCTTCACCAGCCCAGGGAACGGCATGCTCAACAACAACC
AGGGTGGGGGAGATGCGAAGGGCTTCAGTTCAGTCCAACAACAGGGCGTC
GGGTCGCCTGGGTTCCACGGAAGCAGCAGCCAGCAGGGCTTCACCAGCCC
AGGGAACGGCATGCTCAACAACAACCAGGGTGGGGGAGATGCGAAGGGCT
TCAGTTCAGTCCAACAACAGGTGCACGACATGTTCATCGGCGCAGACGAC
GAGCAAGGGCGGAGCGTGACGGACGTCGCCAACGCGCTCCGCGGCCGCGG
GATCTCGCAACAGGACGTTCTGTGCACGACATGTTCATCGGCGCAGACGA
CGAGCAAGGGCGGAGCGTGACGGACGTCGCCAACGCGCTCCGCGGCCGCG
GGATCTCGCAACAGGACGTTCTCGACGCGGTACAATTCCTGTCGGGAGAG
GGGCACCTATACTCCACAATCGACGACGACCACTACCGCTCCACAGAGAC
CTGACGACGCGGTACAATTCCTGTCGGGAGAGGGGCACCTATACTCCACA
ATCGACGACGACCACTACCGCTCCACAGAGACCTGA