prot_C-linearis_contig99.17172.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig99.17172.1
Unique Nameprot_C-linearis_contig99.17172.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length82
Homology
BLAST of mRNA_C-linearis_contig99.17172.1 vs. uniprot
Match: D7G7U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U4_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.270e-19
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0
Query:    1 MPAAHQTRDEVSACWRALSEHQHFRRLTTPEKLQMINHRPLQPVAVHLMIE 51
            MPAA +TR+ VSACWRALSEH+HF RLTTPEKLQMINHRP Q VAVHL+ E
Sbjct:   58 MPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLVSE 108          
BLAST of mRNA_C-linearis_contig99.17172.1 vs. uniprot
Match: A0A225VL34_9STRA (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VL34_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.200e-6
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:   27 LTTPEKLQMINHRPLQPVAVHLMIEDCHRRFRDDALVEELIALLEKHLGS 76
            LT+ EKLQ INH P++ V +HL+IEDC  RF  +  V+ELI ++E+ LG+
Sbjct:   80 LTSAEKLQFINHIPMELVDIHLIIEDCAGRF-SETQVDELIRIVERTLGA 128          
BLAST of mRNA_C-linearis_contig99.17172.1 vs. uniprot
Match: A0A397ECQ9_9STRA (DNA-directed RNA polymerase III subunit RPC9 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ECQ9_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 9.260e-6
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 0
Query:   27 LTTPEKLQMINHRPLQPVAVHLMIEDCHRRFRDDALVEELIALLEKHLGSAESGE 81
            LT  EKLQ INH P++ V VHL+IEDC  R  +   VEEL+A+  + LG+ +  E
Sbjct:   74 LTNAEKLQFINHCPMELVDVHLIIEDCAERLTE-VQVEELMAITAETLGATDDDE 127          
BLAST of mRNA_C-linearis_contig99.17172.1 vs. uniprot
Match: A0A485KMP9_9STRA (DNA-directed RNA polymerase III subunit RPC9 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485KMP9_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 9.910e-6
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 0
Query:   27 LTTPEKLQMINHRPLQPVAVHLMIEDCHRRFRDDALVEELIALLEKHLGSAESGE 81
            LT  EKLQ INH P++ V VHL+IEDC  R  +   VEEL+A+  + LG+ +  E
Sbjct:   78 LTNAEKLQFINHCPMELVDVHLIIEDCAERLTE-VQVEELMAITAETLGATDDDE 131          
BLAST of mRNA_C-linearis_contig99.17172.1 vs. uniprot
Match: A0A5D6Y3B9_9STRA (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3B9_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.110e-5
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 0
Query:   27 LTTPEKLQMINHRPLQPVAVHLMIEDCHRRFRDDALVEELIALLEKHLGSAESGE 81
            LT  EKLQ INH P++ V VHL++EDC  RF  +A ++ELI ++E+ L     G+
Sbjct:   79 LTPAEKLQFINHVPVELVDVHLIVEDCAGRF-SEAQIDELIQIVEQTLAHKPEGD 132          
BLAST of mRNA_C-linearis_contig99.17172.1 vs. uniprot
Match: K3X3I4_GLOUD (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3I4_GLOUD)

HSP 1 Score: 49.7 bits (117), Expect = 1.510e-5
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 0
Query:   27 LTTPEKLQMINHRPLQPVAVHLMIEDCHRRFRDDALVEELIALLEKHL 74
            LT  EKLQ INH P++ V VHL++EDC  RF  +A +EELI ++E+ L
Sbjct:   79 LTPAEKLQFINHIPVELVDVHLIVEDCAGRF-SEAQIEELIQIVEQTL 125          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17172.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G7U4_ECTSI1.270e-1980.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A225VL34_9STRA3.200e-652.00DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
A0A397ECQ9_9STRA9.260e-649.09DNA-directed RNA polymerase III subunit RPC9 n=2 T... [more]
A0A485KMP9_9STRA9.910e-649.09DNA-directed RNA polymerase III subunit RPC9 n=4 T... [more]
A0A5D6Y3B9_9STRA1.110e-547.27DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
K3X3I4_GLOUD1.510e-554.17DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 1..75
e-value: 1.6E-12
score: 49.4
IPR005574RNA polymerase subunit RPB4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 2..72
e-value: 7.5E-11
score: 42.4
IPR038846DNA-directed RNA polymerase III subunit RPC9PANTHERPTHR15561CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEINcoord: 2..79
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 3..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:343552..345051 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17172.1mRNA_C-linearis_contig99.17172.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig99 343010..345583 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig99.17172.1 ID=prot_C-linearis_contig99.17172.1|Name=mRNA_C-linearis_contig99.17172.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=82bp
MPAAHQTRDEVSACWRALSEHQHFRRLTTPEKLQMINHRPLQPVAVHLMI
EDCHRRFRDDALVEELIALLEKHLGSAESGE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038324Rpb4/RPC9_sf
IPR005574RPB4/RPC9
IPR038846RPC9
IPR010997HRDC-like_sf