Homology
BLAST of mRNA_C-linearis_contig99.17172.1 vs. uniprot
Match:
D7G7U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U4_ECTSI)
HSP 1 Score: 147 bits (370), Expect = 1.980e-39
Identity = 78/109 (71.56%), Postives = 89/109 (81.65%), Query Frame = 2
Query: 359 VAYDRLVADFEALQCVRSQRQRRQASATRKKPPDGDAVADAASGVLAAEEAAERYLSKMPAAHQTRDEVSACWRALSEHQHFRRLTTPEKLQMINHRPLQPVAVHLMIE 685
V YDRLVADFEAL+CVR QR+RR+A +K+PPD + + G LAAEEA ERYLSKMPAA +TR+ VSACWRALSEH+HF RLTTPEKLQMINHRP Q VAVHL+ E
Sbjct: 4 VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGS----SGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLVSE 108
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17172.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.98e-39 / Id = 71.56 Sequence D7G7U4_ECTSI
Match Name E-value Identity Description
D7G7U4_ECTSI 1.980e-39 71.56 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description RNA polymerase II, Rpb4 Ec32 ortholog Ec-06_000280.1 Exons 4 Model size 1320 Cds size 246 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930850.1087496-UTR-C-linearis_contig99:343009..343551 1622930850.1087496-UTR-C-linearis_contig99:343009..343551 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 343010..343551 - 1690881281.670561-UTR-C-linearis_contig99:343009..343551 1690881281.670561-UTR-C-linearis_contig99:343009..343551 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 343010..343551 - 1622930850.2085369-UTR-C-linearis_contig99:345051..345583 1622930850.2085369-UTR-C-linearis_contig99:345051..345583 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 345052..345583 - 1690881281.722987-UTR-C-linearis_contig99:345051..345583 1690881281.722987-UTR-C-linearis_contig99:345051..345583 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 345052..345583 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930850.1260586-CDS-C-linearis_contig99:343551..343578 1622930850.1260586-CDS-C-linearis_contig99:343551..343578 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 343552..343578 - 1690881281.6794722-CDS-C-linearis_contig99:343551..343578 1690881281.6794722-CDS-C-linearis_contig99:343551..343578 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 343552..343578 - 1622930850.1436288-CDS-C-linearis_contig99:344012..344087 1622930850.1436288-CDS-C-linearis_contig99:344012..344087 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 344013..344087 - 1690881281.6871245-CDS-C-linearis_contig99:344012..344087 1690881281.6871245-CDS-C-linearis_contig99:344012..344087 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 344013..344087 - 1622930850.1624427-CDS-C-linearis_contig99:344523..344637 1622930850.1624427-CDS-C-linearis_contig99:344523..344637 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 344524..344637 - 1690881281.6982448-CDS-C-linearis_contig99:344523..344637 1690881281.6982448-CDS-C-linearis_contig99:344523..344637 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 344524..344637 - 1622930850.18923-CDS-C-linearis_contig99:345021..345051 1622930850.18923-CDS-C-linearis_contig99:345021..345051 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 345022..345051 - 1690881281.7095726-CDS-C-linearis_contig99:345021..345051 1690881281.7095726-CDS-C-linearis_contig99:345021..345051 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 345022..345051 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17172.1
>prot_C-linearis_contig99.17172.1 ID=prot_C-linearis_contig99.17172.1|Name=mRNA_C-linearis_contig99.17172.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=82bp
MPAAHQTRDEVSACWRALSEHQHFRRLTTPEKLQMINHRPLQPVAVHLMI back to top mRNA from alignment at C-linearis_contig99:343010..345583-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17172.1 ID=mRNA_C-linearis_contig99.17172.1|Name=mRNA_C-linearis_contig99.17172.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2574bp|location=Sequence derived from alignment at C-linearis_contig99:343010..345583- (Chordaria linearis ClinC8C monoicous)TTGTGTGCACACAGAGTGTTCATCTTTCCGGACGAATTCAAAAAAATCAC
GGGGGGACTTGCAAAATCAAATCAAATATATCTCAGATACCCTGGACTAC
TAATGTGTGCTACGGCGCCCCCTGGCATCCTAATTTTAATTTTTGACCAG
CCTTTCCAGCTACTGCTGTACTGCTGTCTGCCTTTCCACAGAAGCTTGGG
CGCAATGGAAGTGTGAGTATGGTTTTCATTCCCACTACGTGTTGGCGCCG
CACGATCGATGGTATTGTAGCAATTTTTCAACACGCATCTTCACTGGACC
GAACTCTGCGAGAGCTTCCTGTTGCTGCGCTGCTTCTTCGCCGTTTTGCT
CTCGCAGGGTCGCGTACGATAGGCTAGTTGCGGACTTTGAGGCTCTGCAA
TGTGTGCGTAGCCAGCGCCAACGGCGACAAGCTAGCGCGACAAGGAAGAA
GCCTCCGGACGGCGATGCTGTTGCCGATGCCGCCAGCGGCGTTTTGGCAG
CCGAGGAAGCGGCAGAGCGGTACTTATCCAAG ATGCCTGCCGCACATCAG
ACCAGAGATGAG GTGAGGGATAGGGCGGAGCCTCATAAGAGACAGTGGTT
ATTGTCGTTTATCGTTGATGTTGTGGTGCGGCTGCGTTGTGCGTTGGTGC
TTGTTTCGAAATCGAAGATCTGAGGATCTGTGCCGTGTCTCCGTGTCGCC
ACGAAAAGGGAGAAACATGCACACACACGAGATCGAAGTTGTGCGTTTTC
CCCTTGTAACAGGGGGTGTTTCTTATGCGAATGCTGATACCCTGTACGTT
GAAGGAATTGCTTGGTAACGGGATGGAGCTCGCTAAGGTACCGCTGAGGT
ACCACCACTGCCGGCCAACCGCTTGTCTTAACAGCTATCAGCCCGGCCGT
GTTGCCCTCGACCGCGTGTTGCCTGTCAACCTGTTGTTATGTGAAGGTAT
CCGCGTGCTGGCGAGCGCTTTCGGAACACCAGCATTTCCGCCGGCTCACT
ACCCCGGAGAAGCTTCAGATGATCAATCACCGCCCCTTGCAGCCTGTAGC
AGTGCACTTG GTGAGGAAAGCACAGCACATGTGTTGGTGTTGGTATTGTG
AGTCATGACAAGCCGCCGATGAGCCATGCTGCAACATGGTTCTCAGGAGC
ACGCTGTCTCCGGTTTATGTTTCGTCATCGCCAGCGAAGGCCCCCTATGT
TCGATTTTCATGTGTACACTCAAAAGCTATCTTAGCTCTCGTTGTAGCGT
TGGACGAGCTAAATCGCGTGGCGTGCCGCCATGTGATGATCAGTTCCTTT
TCGTTTTGTGCGGAATTCAGAGCACTACTCTGTCGTGGCACGGGCCTTGG
CCCCCCGCGTGAAACGACTCGCGACTAGGAGAGTCGGAAGAGTAGAAAGA
GTTGCGCACGCTTGCTCTTGCTTTACAGTTCTTGTACACAACGTGACCAT
GTTCGATGGCTACCGTATGCGCTCGACGGGTTGGCGCACGCCGCAGATGA
TCGAAGACTGCCATCGGAGATTCCGCGACGACGCTCTGGTGGAGGAACTC
ATCGCACTCCTGGAAAAGCAC GTGAGAGCTACCGGTACATGTTACCGGCA
TGTAACCCTTGTTATTTGTTATTTAGGCTGCACTGCTGCCTTGCCAACTC
GGCATCGCCAAAGCCCCTCCGACCGTTTCTCGACCGATGAACTTGCTGTA
GACTATCTTCTGTCGGGAGGGGAAGAAAGGTCAAACGTTTGTGTGCGTAG
CGAAGAAGCACTTAGTTTACTCAACAGCAGAGCCTTATATCTCAGCTCTG
CGGACAGTAGCACGGGACGTGGCTGCATCCCGGAAACTAAACTAGTGTTT
CCTTGTGTTTTTCAACCCTATTGTAAACTCGAGGCAAGTTGAATTCTCTG
GCTCGCCGAAACAGCAGTGATGGTAGTTGGGGATGTGAAAGTCTAAAAAT
ATCTTCGTCGCAATGTCACGTCCAAACCTGCTGCTGCCATCGATCTTGTC
GGCAGTTGGGATCTGCGGAGAGCGGCGAGTGA AGCAGCAGCCGGTTCGCT
AGGATTGGATTGCCTGCGCTGTATCAACTCTATATCTAGGAGCTTGGTGG
GAACACGCGTCGAGCCGCAGCTACAATAAGCTCGAGCCTTGCTTCGGATT
GGTTTCGAAGCAAGGCGGTCATAGCTCGTATGATGTCGACTTTCCGTACA
ATAGTCGTACAGGGATGCTAGGCTAGGTTGCATCCCGACACAGGCTCGTG
TGATGTTTTCGTGTACATAGTTACGATTTTCGTCTACATGCTTTCACGCG
GTGCTGCCAGCAAGTGCGTGTGGGGATTCTTCACGGGGTACATACGTGGA
TCGGCCTTCGCGGGTTCTCGCTCAAACGGCTCCGATCAATAATGATTAGT
TTTCTTTTTTGTTGACCAGAGGGTGGCGCAGGGCGGTCGAACGTGTTGCT
CGATGGGTGTGATGGGTACGATATTTTGCTCCATGAGTGATAGCTGTTCA
CCTCCTCTGCCGTAAGTTATCGCTCGATGTGACAAGGCGTTGCCCACAAC
GTGCGTCTCAGGGATGTCCTGAAG back to top Coding sequence (CDS) from alignment at C-linearis_contig99:343010..345583-
>mRNA_C-linearis_contig99.17172.1 ID=mRNA_C-linearis_contig99.17172.1|Name=mRNA_C-linearis_contig99.17172.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at C-linearis_contig99:343010..345583- (Chordaria linearis ClinC8C monoicous) back to top