mRNA_C-linearis_contig99.17172.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17172.1
Unique NamemRNA_C-linearis_contig99.17172.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig99.17172.1 vs. uniprot
Match: D7G7U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U4_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.980e-39
Identity = 78/109 (71.56%), Postives = 89/109 (81.65%), Query Frame = 2 
Query:  359 VAYDRLVADFEALQCVRSQRQRRQASATRKKPPDGDAVADAASGVLAAEEAAERYLSKMPAAHQTRDEVSACWRALSEHQHFRRLTTPEKLQMINHRPLQPVAVHLMIE 685
            V YDRLVADFEAL+CVR QR+RR+A   +K+PPD  +    + G LAAEEA ERYLSKMPAA +TR+ VSACWRALSEH+HF RLTTPEKLQMINHRP Q VAVHL+ E
Sbjct:    4 VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGS----SGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLVSE 108
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7U4_ECTSI1.980e-3971.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:343010..345583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase II, Rpb4
Ec32 orthologEc-06_000280.1
Exons4
Model size1320
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17172.1prot_C-linearis_contig99.17172.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 343552..345051 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930850.1087496-UTR-C-linearis_contig99:343009..3435511622930850.1087496-UTR-C-linearis_contig99:343009..343551Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 343010..343551 -
1690881281.670561-UTR-C-linearis_contig99:343009..3435511690881281.670561-UTR-C-linearis_contig99:343009..343551Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 343010..343551 -
1622930850.2085369-UTR-C-linearis_contig99:345051..3455831622930850.2085369-UTR-C-linearis_contig99:345051..345583Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 345052..345583 -
1690881281.722987-UTR-C-linearis_contig99:345051..3455831690881281.722987-UTR-C-linearis_contig99:345051..345583Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 345052..345583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930850.1260586-CDS-C-linearis_contig99:343551..3435781622930850.1260586-CDS-C-linearis_contig99:343551..343578Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 343552..343578 -
1690881281.6794722-CDS-C-linearis_contig99:343551..3435781690881281.6794722-CDS-C-linearis_contig99:343551..343578Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 343552..343578 -
1622930850.1436288-CDS-C-linearis_contig99:344012..3440871622930850.1436288-CDS-C-linearis_contig99:344012..344087Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 344013..344087 -
1690881281.6871245-CDS-C-linearis_contig99:344012..3440871690881281.6871245-CDS-C-linearis_contig99:344012..344087Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 344013..344087 -
1622930850.1624427-CDS-C-linearis_contig99:344523..3446371622930850.1624427-CDS-C-linearis_contig99:344523..344637Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 344524..344637 -
1690881281.6982448-CDS-C-linearis_contig99:344523..3446371690881281.6982448-CDS-C-linearis_contig99:344523..344637Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 344524..344637 -
1622930850.18923-CDS-C-linearis_contig99:345021..3450511622930850.18923-CDS-C-linearis_contig99:345021..345051Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 345022..345051 -
1690881281.7095726-CDS-C-linearis_contig99:345021..3450511690881281.7095726-CDS-C-linearis_contig99:345021..345051Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 345022..345051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17172.1

>prot_C-linearis_contig99.17172.1 ID=prot_C-linearis_contig99.17172.1|Name=mRNA_C-linearis_contig99.17172.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=82bp
MPAAHQTRDEVSACWRALSEHQHFRRLTTPEKLQMINHRPLQPVAVHLMI
EDCHRRFRDDALVEELIALLEKHLGSAESGE*
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mRNA from alignment at C-linearis_contig99:343010..345583-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17172.1 ID=mRNA_C-linearis_contig99.17172.1|Name=mRNA_C-linearis_contig99.17172.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2574bp|location=Sequence derived from alignment at C-linearis_contig99:343010..345583- (Chordaria linearis ClinC8C monoicous)
TTGTGTGCACACAGAGTGTTCATCTTTCCGGACGAATTCAAAAAAATCAC
GGGGGGACTTGCAAAATCAAATCAAATATATCTCAGATACCCTGGACTAC
TAATGTGTGCTACGGCGCCCCCTGGCATCCTAATTTTAATTTTTGACCAG
CCTTTCCAGCTACTGCTGTACTGCTGTCTGCCTTTCCACAGAAGCTTGGG
CGCAATGGAAGTGTGAGTATGGTTTTCATTCCCACTACGTGTTGGCGCCG
CACGATCGATGGTATTGTAGCAATTTTTCAACACGCATCTTCACTGGACC
GAACTCTGCGAGAGCTTCCTGTTGCTGCGCTGCTTCTTCGCCGTTTTGCT
CTCGCAGGGTCGCGTACGATAGGCTAGTTGCGGACTTTGAGGCTCTGCAA
TGTGTGCGTAGCCAGCGCCAACGGCGACAAGCTAGCGCGACAAGGAAGAA
GCCTCCGGACGGCGATGCTGTTGCCGATGCCGCCAGCGGCGTTTTGGCAG
CCGAGGAAGCGGCAGAGCGGTACTTATCCAAGATGCCTGCCGCACATCAG
ACCAGAGATGAGGTGAGGGATAGGGCGGAGCCTCATAAGAGACAGTGGTT
ATTGTCGTTTATCGTTGATGTTGTGGTGCGGCTGCGTTGTGCGTTGGTGC
TTGTTTCGAAATCGAAGATCTGAGGATCTGTGCCGTGTCTCCGTGTCGCC
ACGAAAAGGGAGAAACATGCACACACACGAGATCGAAGTTGTGCGTTTTC
CCCTTGTAACAGGGGGTGTTTCTTATGCGAATGCTGATACCCTGTACGTT
GAAGGAATTGCTTGGTAACGGGATGGAGCTCGCTAAGGTACCGCTGAGGT
ACCACCACTGCCGGCCAACCGCTTGTCTTAACAGCTATCAGCCCGGCCGT
GTTGCCCTCGACCGCGTGTTGCCTGTCAACCTGTTGTTATGTGAAGGTAT
CCGCGTGCTGGCGAGCGCTTTCGGAACACCAGCATTTCCGCCGGCTCACT
ACCCCGGAGAAGCTTCAGATGATCAATCACCGCCCCTTGCAGCCTGTAGC
AGTGCACTTGGTGAGGAAAGCACAGCACATGTGTTGGTGTTGGTATTGTG
AGTCATGACAAGCCGCCGATGAGCCATGCTGCAACATGGTTCTCAGGAGC
ACGCTGTCTCCGGTTTATGTTTCGTCATCGCCAGCGAAGGCCCCCTATGT
TCGATTTTCATGTGTACACTCAAAAGCTATCTTAGCTCTCGTTGTAGCGT
TGGACGAGCTAAATCGCGTGGCGTGCCGCCATGTGATGATCAGTTCCTTT
TCGTTTTGTGCGGAATTCAGAGCACTACTCTGTCGTGGCACGGGCCTTGG
CCCCCCGCGTGAAACGACTCGCGACTAGGAGAGTCGGAAGAGTAGAAAGA
GTTGCGCACGCTTGCTCTTGCTTTACAGTTCTTGTACACAACGTGACCAT
GTTCGATGGCTACCGTATGCGCTCGACGGGTTGGCGCACGCCGCAGATGA
TCGAAGACTGCCATCGGAGATTCCGCGACGACGCTCTGGTGGAGGAACTC
ATCGCACTCCTGGAAAAGCACGTGAGAGCTACCGGTACATGTTACCGGCA
TGTAACCCTTGTTATTTGTTATTTAGGCTGCACTGCTGCCTTGCCAACTC
GGCATCGCCAAAGCCCCTCCGACCGTTTCTCGACCGATGAACTTGCTGTA
GACTATCTTCTGTCGGGAGGGGAAGAAAGGTCAAACGTTTGTGTGCGTAG
CGAAGAAGCACTTAGTTTACTCAACAGCAGAGCCTTATATCTCAGCTCTG
CGGACAGTAGCACGGGACGTGGCTGCATCCCGGAAACTAAACTAGTGTTT
CCTTGTGTTTTTCAACCCTATTGTAAACTCGAGGCAAGTTGAATTCTCTG
GCTCGCCGAAACAGCAGTGATGGTAGTTGGGGATGTGAAAGTCTAAAAAT
ATCTTCGTCGCAATGTCACGTCCAAACCTGCTGCTGCCATCGATCTTGTC
GGCAGTTGGGATCTGCGGAGAGCGGCGAGTGAAGCAGCAGCCGGTTCGCT
AGGATTGGATTGCCTGCGCTGTATCAACTCTATATCTAGGAGCTTGGTGG
GAACACGCGTCGAGCCGCAGCTACAATAAGCTCGAGCCTTGCTTCGGATT
GGTTTCGAAGCAAGGCGGTCATAGCTCGTATGATGTCGACTTTCCGTACA
ATAGTCGTACAGGGATGCTAGGCTAGGTTGCATCCCGACACAGGCTCGTG
TGATGTTTTCGTGTACATAGTTACGATTTTCGTCTACATGCTTTCACGCG
GTGCTGCCAGCAAGTGCGTGTGGGGATTCTTCACGGGGTACATACGTGGA
TCGGCCTTCGCGGGTTCTCGCTCAAACGGCTCCGATCAATAATGATTAGT
TTTCTTTTTTGTTGACCAGAGGGTGGCGCAGGGCGGTCGAACGTGTTGCT
CGATGGGTGTGATGGGTACGATATTTTGCTCCATGAGTGATAGCTGTTCA
CCTCCTCTGCCGTAAGTTATCGCTCGATGTGACAAGGCGTTGCCCACAAC
GTGCGTCTCAGGGATGTCCTGAAG
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Coding sequence (CDS) from alignment at C-linearis_contig99:343010..345583-

>mRNA_C-linearis_contig99.17172.1 ID=mRNA_C-linearis_contig99.17172.1|Name=mRNA_C-linearis_contig99.17172.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at C-linearis_contig99:343010..345583- (Chordaria linearis ClinC8C monoicous)
ATGCCTGCCGCACATCAGACCAGAGATGAGATGCCTGCCGCACATCAGAC
CAGAGATGAGGTATCCGCGTGCTGGCGAGCGCTTTCGGAACACCAGCATT
TCCGCCGGCTCACTACCCCGGAGAAGCTTCAGATGATCAATCACCGCCCC
TTGCAGCCTGTAGCAGTGCACTTGGTATCCGCGTGCTGGCGAGCGCTTTC
GGAACACCAGCATTTCCGCCGGCTCACTACCCCGGAGAAGCTTCAGATGA
TCAATCACCGCCCCTTGCAGCCTGTAGCAGTGCACTTGATGATCGAAGAC
TGCCATCGGAGATTCCGCGACGACGCTCTGGTGGAGGAACTCATCGCACT
CCTGGAAAAGCACATGATCGAAGACTGCCATCGGAGATTCCGCGACGACG
CTCTGGTGGAGGAACTCATCGCACTCCTGGAAAAGCACTTGGGATCTGCG
GAGAGCGGCGAGTGATTGGGATCTGCGGAGAGCGGCGAGTGA
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