prot_C-linearis_contig99.17153.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig99.17153.1
Unique Nameprot_C-linearis_contig99.17153.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length283
Homology
BLAST of mRNA_C-linearis_contig99.17153.1 vs. uniprot
Match: D7G7W2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W2_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.170e-60
Identity = 144/309 (46.60%), Postives = 165/309 (53.40%), Query Frame = 0
Query:    3 TNTRKRGAAFLLEKPLVSRLPFEVEQHFSSAFPPPKRVKPAPTRCWRDDNLDKDPC-TDVQSETSGMQEFRQ---REEV----------------AAADVEVEVGGEKGCWL-------TGGRDKLSGGGEHEEK-VRE-LRVAATGVPATGAAAGNSAMVQLKIDAMFAAPRIPPKETKDCSAHPNQKLELDLDAPPPGDSECAGATRKADRGMDVDRGVAGADXXXXXXXXXXGSSCYACRGSLGTGTEGGDVLCAFCDRVACQGCWQKCYACEVPHCSLCLAADYSSQFECFFCPPCNQDRRLESC 282
            + TRKRGA F+ EKPLVSRLPFEVE          KR + A T           P   D+   TS   E +Q   RE +                A A V  +V  E+GCW         G RD  +G     EK  RE L   A    ATG A     +VQLKIDAMFA P +P     +CS   N   EL        D ECAG T + D  MDVD GV GA+          G +CYACRG+LGT   GGD+LC+FCDR ACQ CWQ+C ACEVPHCSLCLAADY+SQFEC+FCPPC QD RLESC
Sbjct:    4 STTRKRGAFFVFEKPLVSRLPFEVE--VDGGVLAKKRARIAATXXXXXXXXXSPPAHEDLDVNTSENFETKQWWTREALQERHRXXXXXXXXXXXAIAAVGADV--ERGCWSGGIWGAREGRRDTRAGTRPSLEKGERECLDEEAVSTAATGGAGAGRTLVQLKIDAMFAVPGLPCTPPSECSGR-NPDAEL-------CDGECAGTTSRGDGAMDVDVGV-GAEPREEG-----GPACYACRGALGT--AGGDILCSFCDRAACQACWQRCSACEVPHCSLCLAADYNSQFECYFCPPCYQDERLESC 292          
BLAST of mRNA_C-linearis_contig99.17153.1 vs. uniprot
Match: A0A6H5LJI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJI1_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 3.430e-57
Identity = 136/311 (43.73%), Postives = 166/311 (53.38%), Query Frame = 0
Query:    3 TNTRKRGAAFLLEKPLVSRLPFEVEQHFSSAFPPPKRVKPAPTRCWRD---------DNLDKDPCTDVQSE----TSGMQEFRQREEV-------AAADVEVEVGGEKGCWLTG--------GRDKLSGGGEHEEKVREL--RVAATGVPATGAAAGNSAMVQLKIDAMFAAPRIPPKETKDCSAH-PNQKLELDLDAPPPGDSECAGATRKADRGMDVDRGVAGADXXXXXXXXXXGSSCYACRGSLGTGTEGGDVLCAFCDRVACQGCWQKCYACEVPHCSLCLAADYSSQFECFFCPPCNQDRRLESC 282
            + TRKRGA ++ EKPLVSRLPFE E          KRV+ A T              ++LD +   +V+++       +QE  + EE        A A V  +VG  +GCWL G        GRD   G     E+V        A    ATG A     +VQLKIDAMFA P +P     +CS    N +L          D ECA  T + D  MDVD GV GA+          G +CYACRG+LGT   GGD+LC+FCDR ACQ CWQ+C AC VPHCSLCLAADY+SQFEC+FCP C QD+RLE C
Sbjct:    4 STTRKRGAFYVFEKPLVSRLPFEAEVDAGGLAR--KRVRIAATTTTETTRPPSPPAHEDLDVNTSENVETQHWWTREALQERHRGEEADSCSSSSAIAPVGADVG--RGCWLGGRWGAREGSGRDTRGGTRPSMERVEPECPDKQAVSTAATGGAGPGRTLVQLKIDAMFAVPGLPCTPPSECSGRIANAEL---------CDGECARTTCRGDGAMDVDVGV-GAEPGEEG-----GPACYACRGALGT--AGGDILCSFCDRAACQACWQRCSACGVPHCSLCLAADYNSQFECYFCPSCYQDKRLECC 293          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17153.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7W2_ECTSI1.170e-6046.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LJI1_9PHAE3.430e-5743.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022773SivaPFAMPF05458Sivacoord: 211..274
e-value: 8.8E-7
score: 28.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:220740..222310 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17153.1mRNA_C-linearis_contig99.17153.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig99 220683..222770 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig99.17153.1 ID=prot_C-linearis_contig99.17153.1|Name=mRNA_C-linearis_contig99.17153.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp
MATNTRKRGAAFLLEKPLVSRLPFEVEQHFSSAFPPPKRVKPAPTRCWRD
DNLDKDPCTDVQSETSGMQEFRQREEVAAADVEVEVGGEKGCWLTGGRDK
LSGGGEHEEKVRELRVAATGVPATGAAAGNSAMVQLKIDAMFAAPRIPPK
ETKDCSAHPNQKLELDLDAPPPGDSECAGATRKADRGMDVDRGVAGADAG
EGEGEGEGGSSCYACRGSLGTGTEGGDVLCAFCDRVACQGCWQKCYACEV
PHCSLCLAADYSSQFECFFCPPCNQDRRLESC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022773Siva