Homology
BLAST of mRNA_C-linearis_contig99.17153.1 vs. uniprot
Match:
D7G7W2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W2_ECTSI)
HSP 1 Score: 202 bits (514), Expect = 3.620e-58
Identity = 144/309 (46.60%), Postives = 165/309 (53.40%), Query Frame = 1
Query: 64 TNTRKRGAAFLLEKPLVSRLPFEVEQHFSSAFPPPKRVKPAPTRCWRDDNLDKDPC-TDVQSETSGMQEFRQ---REEV----------------AAADVEVEVGGEKGCWL-------TGGRDKLSGGGEHEEK-VRE-LRVAATGVPATGAAAGNSAMVQLKIDAMFAAPRIPPKETKDCSAHPNQKLELDLDAPPPGDSECAGATRKADRGMDVDRGVAGADXXXXXXXXXXGSSCYACRGSLGTGTEGGDVLCAFCDRVACQGCWQKCYACEVPHCSLCLAADYSSQFECFFCPPCNQDRRLESC 903
+ TRKRGA F+ EKPLVSRLPFEVE KR + A T P D+ TS E +Q RE + A A V +V E+GCW G RD +G EK RE L A ATG A +VQLKIDAMFA P +P +CS N EL D ECAG T + D MDVD GV GA+ G +CYACRG+LGT GGD+LC+FCDR ACQ CWQ+C ACEVPHCSLCLAADY+SQFEC+FCPPC QD RLESC
Sbjct: 4 STTRKRGAFFVFEKPLVSRLPFEVE--VDGGVLAKKRARIAATXXXXXXXXXSPPAHEDLDVNTSENFETKQWWTREALQERHRXXXXXXXXXXXAIAAVGADV--ERGCWSGGIWGAREGRRDTRAGTRPSLEKGERECLDEEAVSTAATGGAGAGRTLVQLKIDAMFAVPGLPCTPPSECSGR-NPDAEL-------CDGECAGTTSRGDGAMDVDVGV-GAEPREEG-----GPACYACRGALGT--AGGDILCSFCDRAACQACWQRCSACEVPHCSLCLAADYNSQFECYFCPPCYQDERLESC 292
BLAST of mRNA_C-linearis_contig99.17153.1 vs. uniprot
Match:
A0A6H5LJI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJI1_9PHAE)
HSP 1 Score: 193 bits (491), Expect = 9.360e-55
Identity = 136/311 (43.73%), Postives = 166/311 (53.38%), Query Frame = 1
Query: 64 TNTRKRGAAFLLEKPLVSRLPFEVEQHFSSAFPPPKRVKPAPTRCWRD---------DNLDKDPCTDVQSE----TSGMQEFRQREEV-------AAADVEVEVGGEKGCWLTG--------GRDKLSGGGEHEEKVREL--RVAATGVPATGAAAGNSAMVQLKIDAMFAAPRIPPKETKDCSAH-PNQKLELDLDAPPPGDSECAGATRKADRGMDVDRGVAGADXXXXXXXXXXGSSCYACRGSLGTGTEGGDVLCAFCDRVACQGCWQKCYACEVPHCSLCLAADYSSQFECFFCPPCNQDRRLESC 903
+ TRKRGA ++ EKPLVSRLPFE E KRV+ A T ++LD + +V+++ +QE + EE A A V +VG +GCWL G GRD G E+V A ATG A +VQLKIDAMFA P +P +CS N +L D ECA T + D MDVD GV GA+ G +CYACRG+LGT GGD+LC+FCDR ACQ CWQ+C AC VPHCSLCLAADY+SQFEC+FCP C QD+RLE C
Sbjct: 4 STTRKRGAFYVFEKPLVSRLPFEAEVDAGGLAR--KRVRIAATTTTETTRPPSPPAHEDLDVNTSENVETQHWWTREALQERHRGEEADSCSSSSAIAPVGADVG--RGCWLGGRWGAREGSGRDTRGGTRPSMERVEPECPDKQAVSTAATGGAGPGRTLVQLKIDAMFAVPGLPCTPPSECSGRIANAEL---------CDGECARTTCRGDGAMDVDVGV-GAEPGEEG-----GPACYACRGALGT--AGGDILCSFCDRAACQACWQRCSACGVPHCSLCLAADYNSQFECYFCPSCYQDKRLECC 293
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17153.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 3.62e-58 / Id = 46.60 Expect = 9.36e-55 / Id = 43.73 Sequence D7G7W2_ECTSI A0A6H5LJI1_9PHAE
Match Name E-value Identity Description
D7G7W2_ECTSI 3.620e-58 46.60 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5LJI1_9PHAE 9.360e-55 43.73 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description Siva Ec32 ortholog Ec-06_000100.1 Exons 2 Model size 1366 Cds size 849 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930847.2520814-UTR-C-linearis_contig99:220682..220739 1622930847.2520814-UTR-C-linearis_contig99:220682..220739 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 220683..220739 + 1690881280.2045207-UTR-C-linearis_contig99:220682..220739 1690881280.2045207-UTR-C-linearis_contig99:220682..220739 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 220683..220739 + 1622930847.3125653-UTR-C-linearis_contig99:222310..222770 1622930847.3125653-UTR-C-linearis_contig99:222310..222770 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 222311..222770 + 1690881280.2395484-UTR-C-linearis_contig99:222310..222770 1690881280.2395484-UTR-C-linearis_contig99:222310..222770 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 222311..222770 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930847.2736037-CDS-C-linearis_contig99:220739..221133 1622930847.2736037-CDS-C-linearis_contig99:220739..221133 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 220740..221133 + 1690881280.216459-CDS-C-linearis_contig99:220739..221133 1690881280.216459-CDS-C-linearis_contig99:220739..221133 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 220740..221133 + 1622930847.2872646-CDS-C-linearis_contig99:221855..222310 1622930847.2872646-CDS-C-linearis_contig99:221855..222310 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 221856..222310 + 1690881280.2272027-CDS-C-linearis_contig99:221855..222310 1690881280.2272027-CDS-C-linearis_contig99:221855..222310 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 221856..222310 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17153.1
>prot_C-linearis_contig99.17153.1 ID=prot_C-linearis_contig99.17153.1|Name=mRNA_C-linearis_contig99.17153.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp
MATNTRKRGAAFLLEKPLVSRLPFEVEQHFSSAFPPPKRVKPAPTRCWRD back to top mRNA from alignment at C-linearis_contig99:220683..222770+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17153.1 ID=mRNA_C-linearis_contig99.17153.1|Name=mRNA_C-linearis_contig99.17153.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2088bp|location=Sequence derived from alignment at C-linearis_contig99:220683..222770+ (Chordaria linearis ClinC8C monoicous)GTGTGTCGCACCAAGAACTCCCAGCTACGCCTACCTACCGACGAACGTGT
ATCGCTG ATGGCGACGAACACGAGAAAGAGAGGGGCGGCGTTTCTGCTGG
AGAAGCCTCTGGTTTCGCGCCTCCCTTTCGAGGTGGAGCAGCATTTCTCG
AGCGCTTTCCCGCCTCCCAAGCGAGTGAAGCCAGCACCAACACGTTGTTG
GCGCGATGACAACCTTGACAAGGACCCTTGTACGGATGTTCAGAGCGAGA
CCAGCGGCATGCAGGAATTTCGCCAGAGAGAGGAGGTTGCTGCCGCTGAT
GTGGAAGTGGAAGTCGGTGGTGAAAAGGGCTGTTGGTTGACGGGAGGCAG
GGATAAACTTAGCGGCGGTGGCGAGCACGAGGAGAAGGTGCGAGAGCTAC
GCGTAGCAGCAACAGGGGTACCAGCAACAGGGGCAGCAGCGGGCAACTCA
G GTGAGCTTAGAGGAAGTGACGGAAAACACGGGTGATGTTTTGTGGAGGA
CGTCGGTACCGCGATTGCAGTCGAGGAAGGGAAAGAGAGCCATGCACAAC
AGACACTAGTGCCGTTTCCGGAGTATTTCAAAATTTCAGTTCAAATCCAT
CTCGCCGCTCGCCATCACTCAAGCAAAGCCCTGTCATAGAGGTCCAAAGG
AGAGCAGGGTCCGCCTGTCTTGGGTTGACCACAGACACGCCTAGTACGAG
ATAAGAGGAAAACACCAGAGTCTCTCGGGCATCTTATCTTATGCATTCTG
GTCGCCTTCTTTGTTCGGTGATGTGCTCTGCTCTTCAGAAACTCCGCTGC
TCTTCAAACTCAAAACTGACGAAGCCTGTGCGATTGGCGCAATCATACAT
AGCTCTCGGTTGTTGTGCTCAGCCCTGTTGCCGCCCGCAATTGATAAGCA
ATGTAGTTTACAGTTATACTAAGGCAAATATTTTTGCCGTTAAGTATCGT
TGATATCTGTTATTCTTACATCGCAACCAAGGTACACATCAGTAGTCTAC
CGATCTGGTTTGAAGAATTCCAAGCCTTGAGAACGGTGAGTCTACACCCA
CCCTTCGCGCGTGCGCCTATGATCTTTAACCGTTCCCCTTCTCTGTCTCT
GTCTCTCTGTCCCTATGTGTGTGTGTGTGTGTGTGTGTGCTTGTTCTGCG
TGCCTTGCTAGGACCCCGGCGAGCTATGGTGCAGCTCAAAATCGACGCCA
TGTTTGCGGCGCCCAGAATACCGCCGAAAGAAACTAAAGATTGCTCAGCC
CACCCCAACCAAAAATTAGAATTAGATTTGGACGCCCCCCCCCCAGGAGA
CTCCGAATGTGCTGGAGCTACGAGGAAAGCAGACCGGGGAATGGATGTTG
ACAGGGGGGTAGCTGGAGCAGATGCTGGGGAAGGGGAAGGGGAGGGGGAG
GGTGGATCCTCTTGCTATGCTTGCCGGGGCAGCCTAGGGACAGGAACAGA
GGGTGGGGACGTCTTGTGTGCGTTTTGCGATCGCGTCGCGTGCCAGGGGT
GCTGGCAGAAGTGTTACGCGTGCGAGGTGCCACACTGCAGCTTGTGTTTA
GCGGCGGACTATAGCTCGCAGTTCGAGTGCTTTTTCTGTCCGCCTTGCAA
TCAGGACCGGCGACTTGAGTCGTGCTAG GTGCTTTTTCTAGGAAGCAATA
TAGATCGGAGAGCGCTTTGTGGCAGGGTTAGGGGCTTCTGCTGCTGAAGG
GGAGGGGATGTGTTCCCAGGACCACGCAAGTTGTTGCGTTCGGGTGTCGA
AATCCACAAGTCAACGGTCACGATAGGCTGTCGGGTGTAGTACTCACAGT
TTTTTGTGAGTTGATAGCGTGAACTTGCAAGCTGTCCCCACTCCATGTAC
AGCAGTCTAAGGTCGTAAGCGCGAAAGATGGTTGTTGGTTGTTGTGTTTC
CCCAAAACAAATGTTGACGTTGCGTTTACTGAAGTTCAAGTCCGGGTCAA
CGCCGTTGCTATAAGGTGGATCCCTCCTGCGTTTGATCGTCCGTTCAGAC
AATAACAGTTTTTTTTTCTCGCTGTGATCGAGGGCGCTGTAGCCGCACGA
CTGGTGCACTGCTGTACATGGTACGCATCATGTGCGGT back to top Coding sequence (CDS) from alignment at C-linearis_contig99:220683..222770+
>mRNA_C-linearis_contig99.17153.1 ID=mRNA_C-linearis_contig99.17153.1|Name=mRNA_C-linearis_contig99.17153.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at C-linearis_contig99:220683..222770+ (Chordaria linearis ClinC8C monoicous) back to top