prot_C-linearis_contig99.17147.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig99.17147.1
Unique Nameprot_C-linearis_contig99.17147.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length134
Homology
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BLAST of mRNA_C-linearis_contig99.17147.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.570e-18
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 0 
Query:   24 LSFLISRVQQSRKRSRDDEGNGLLGFLQDSALIEVVDESDLEEDVAPLK 72
            L FLISRVQQSRKR RDDEGNG+LGFLQDSALIEVVD+SDLEEDVAPLK
Sbjct:   34 LPFLISRVQQSRKRGRDDEGNGILGFLQDSALIEVVDDSDLEEDVAPLK 82
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17147.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5E5_9PHAE1.570e-1891.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 30..134
NoneNo IPR availableTMHMMTMhelixcoord: 10..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:119836..120237 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17147.1mRNA_C-linearis_contig99.17147.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig99 119540..120237 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig99.17147.1 ID=prot_C-linearis_contig99.17147.1|Name=mRNA_C-linearis_contig99.17147.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp
MWRNTNVIPTSRLFHALLSTAFCLSFLISRVQQSRKRSRDDEGNGLLGFL
QDSALIEVVDESDLEEDVAPLKVSKLKGMISPTGDVFGIGCFARWLFQDI
VWRIHALTSNISASCIVLNNKDHRFPSFVFRRAA
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