mRNA_C-linearis_contig99.17147.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17147.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 2.950e-17 Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 3 Query: 366 LSFLISRVQQSRKRSRDDEGNGLLGFLQDSALIEVVDESDLEEDVAPLK 512
L FLISRVQQSRKR RDDEGNG+LGFLQDSALIEVVD+SDLEEDVAPLK
Sbjct: 34 LPFLISRVQQSRKRGRDDEGNGILGFLQDSALIEVVDDSDLEEDVAPLK 82 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17147.1 >prot_C-linearis_contig99.17147.1 ID=prot_C-linearis_contig99.17147.1|Name=mRNA_C-linearis_contig99.17147.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp MWRNTNVIPTSRLFHALLSTAFCLSFLISRVQQSRKRSRDDEGNGLLGFLback to top mRNA from alignment at C-linearis_contig99:119540..120237+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17147.1 ID=mRNA_C-linearis_contig99.17147.1|Name=mRNA_C-linearis_contig99.17147.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=698bp|location=Sequence derived from alignment at C-linearis_contig99:119540..120237+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:119540..120237+ >mRNA_C-linearis_contig99.17147.1 ID=mRNA_C-linearis_contig99.17147.1|Name=mRNA_C-linearis_contig99.17147.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at C-linearis_contig99:119540..120237+ (Chordaria linearis ClinC8C monoicous)back to top |