mRNA_C-linearis_contig99.17147.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17147.1
Unique NamemRNA_C-linearis_contig99.17147.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig99.17147.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.950e-17
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 3 
Query:  366 LSFLISRVQQSRKRSRDDEGNGLLGFLQDSALIEVVDESDLEEDVAPLK 512
            L FLISRVQQSRKR RDDEGNG+LGFLQDSALIEVVD+SDLEEDVAPLK
Sbjct:   34 LPFLISRVQQSRKRGRDDEGNGILGFLQDSALIEVVDDSDLEEDVAPLK 82
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5E5_9PHAE2.950e-1791.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:119540..120237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size699
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.9237528-UTR-C-linearis_contig99:119539..1198351622930845.9237528-UTR-C-linearis_contig99:119539..119835Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 119540..119835 +
1690881279.5956264-UTR-C-linearis_contig99:119539..1198351690881279.5956264-UTR-C-linearis_contig99:119539..119835Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 119540..119835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.9402087-CDS-C-linearis_contig99:119835..1202371622930845.9402087-CDS-C-linearis_contig99:119835..120237Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 119836..120237 +
1690881279.6088233-CDS-C-linearis_contig99:119835..1202371690881279.6088233-CDS-C-linearis_contig99:119835..120237Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 119836..120237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17147.1prot_C-linearis_contig99.17147.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 119836..120237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17147.1

>prot_C-linearis_contig99.17147.1 ID=prot_C-linearis_contig99.17147.1|Name=mRNA_C-linearis_contig99.17147.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp
MWRNTNVIPTSRLFHALLSTAFCLSFLISRVQQSRKRSRDDEGNGLLGFL
QDSALIEVVDESDLEEDVAPLKVSKLKGMISPTGDVFGIGCFARWLFQDI
VWRIHALTSNISASCIVLNNKDHRFPSFVFRRAA
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mRNA from alignment at C-linearis_contig99:119540..120237+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17147.1 ID=mRNA_C-linearis_contig99.17147.1|Name=mRNA_C-linearis_contig99.17147.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=698bp|location=Sequence derived from alignment at C-linearis_contig99:119540..120237+ (Chordaria linearis ClinC8C monoicous)
GTATGTACTTATATGTGTTGCCTTACATGGTCGATGAATGTCGTACACGC
CACCGAGGCCGTGTGGCACCCACCTGCTTGTGTGCGTTTCCCTTTGTGCC
ATGTTTCAGATTCAGGTTTTCTATACCAAGTGCATTCGTTAAATTTGTTC
CTCCTGGGATTTCGAATTTAGGAGATGGTTGTGTCGTGTACCATGCTCCC
AATTTCTGTGTTTTGCGGGGAAGATGGCAGACACAAATACACCACGTTCT
ACGCTCGCTGAAAAGAGGGAGTAAATAGAGACAACCAACCGTAAAGATGT
GGAGAAACACGAACGTGATACCCACAAGCCGCCTCTTTCACGCCCTGCTG
TCGACGGCGTTTTGCCTTTCTTTCTTGATTTCACGCGTGCAGCAGTCCAG
AAAACGTAGTCGCGACGACGAGGGCAACGGGTTACTGGGCTTCCTCCAGG
ACTCAGCGCTTATCGAGGTGGTGGATGAGTCCGACCTTGAAGAAGACGTG
GCACCCTTGAAAGTGAGTAAATTGAAAGGGATGATCTCCCCCACTGGCGA
CGTCTTTGGTATTGGTTGTTTCGCTCGATGGCTCTTCCAAGATATTGTGT
GGCGAATTCATGCATTGACCAGCAATATATCAGCATCGTGCATCGTTTTG
AATAACAAAGACCACCGCTTCCCCTCCTTCGTTTTCCGACGTGCCGCA
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Coding sequence (CDS) from alignment at C-linearis_contig99:119540..120237+

>mRNA_C-linearis_contig99.17147.1 ID=mRNA_C-linearis_contig99.17147.1|Name=mRNA_C-linearis_contig99.17147.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at C-linearis_contig99:119540..120237+ (Chordaria linearis ClinC8C monoicous)
ATGTGGAGAAACACGAACGTGATACCCACAAGCCGCCTCTTTCACGCCCT
GCTGTCGACGGCGTTTTGCCTTTCTTTCTTGATTTCACGCGTGCAGCAGT
CCAGAAAACGTAGTCGCGACGACGAGGGCAACGGGTTACTGGGCTTCCTC
CAGGACTCAGCGCTTATCGAGGTGGTGGATGAGTCCGACCTTGAAGAAGA
CGTGGCACCCTTGAAAGTGAGTAAATTGAAAGGGATGATCTCCCCCACTG
GCGACGTCTTTGGTATTGGTTGTTTCGCTCGATGGCTCTTCCAAGATATT
GTGTGGCGAATTCATGCATTGACCAGCAATATATCAGCATCGTGCATCGT
TTTGAATAACAAAGACCACCGCTTCCCCTCCTTCGTTTTCCGACGTGCCG
CAATGTGGAGAAACACGAACGTGATACCCACAAGCCGCCTCTTTCACGCC
CTGCTGTCGACGGCGTTTTGCCTTTCTTTCTTGATTTCACGCGTGCAGCA
GTCCAGAAAACGTAGTCGCGACGACGAGGGCAACGGGTTACTGGGCTTCC
TCCAGGACTCAGCGCTTATCGAGGTGGTGGATGAGTCCGACCTTGAAGAA
GACGTGGCACCCTTGAAAGTGAGTAAATTGAAAGGGATGATCTCCCCCAC
TGGCGACGTCTTTGGTATTGGTTGTTTCGCTCGATGGCTCTTCCAAGATA
TTGTGTGGCGAATTCATGCATTGACCAGCAATATATCAGCATCGTGCATC
GTTTTGAATAACAAAGACCACCGCTTCCCCTCCTTCGTTTTCCGACGTGC
CGCA
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