mRNA_C-linearis_contig99.17168.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17168.1
Unique NamemRNA_C-linearis_contig99.17168.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig99.17168.1 vs. uniprot
Match: D7G7U7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U7_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.570e-37
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 1 
Query:   58 MPFSLTENIPFLALPVTLITLKITYDVLPPVAFLALVAVAIGCYMFYAGNKSPAAQRTAKKAEATADSLIQELTREEDRAKE 303
            MPFSLTEN+PFLALP+ LITLK+TYDVLP +AFLALVAVA+GCYMFYAG  SPAAQRTAKKAEATADSLI+ELTREEDRAKE
Sbjct:    1 MPFSLTENLPFLALPLALITLKVTYDVLPFMAFLALVAVAVGCYMFYAGKSSPAAQRTAKKAEATADSLIRELTREEDRAKE 82
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7U7_ECTSI2.570e-3787.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:302401..307195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionNeurotransmitter-gated ion-channel transmembrane domain
Ec32 orthologEc-06_000250.1
Exons6
Model size600
Cds size600
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17168.1prot_C-linearis_contig99.17168.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 302401..307195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.4771676-CDS-C-linearis_contig99:302400..3024721622930845.4771676-CDS-C-linearis_contig99:302400..302472Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 302401..302472 -
1690881279.4058478-CDS-C-linearis_contig99:302400..3024721690881279.4058478-CDS-C-linearis_contig99:302400..302472Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 302401..302472 -
1622930845.4912267-CDS-C-linearis_contig99:302934..3030991622930845.4912267-CDS-C-linearis_contig99:302934..303099Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 302935..303099 -
1690881279.420229-CDS-C-linearis_contig99:302934..3030991690881279.420229-CDS-C-linearis_contig99:302934..303099Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 302935..303099 -
1622930845.5081863-CDS-C-linearis_contig99:304078..3041481622930845.5081863-CDS-C-linearis_contig99:304078..304148Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 304079..304148 -
1690881279.4304874-CDS-C-linearis_contig99:304078..3041481690881279.4304874-CDS-C-linearis_contig99:304078..304148Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 304079..304148 -
1622930845.5248106-CDS-C-linearis_contig99:305848..3059311622930845.5248106-CDS-C-linearis_contig99:305848..305931Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 305849..305931 -
1690881279.4417212-CDS-C-linearis_contig99:305848..3059311690881279.4417212-CDS-C-linearis_contig99:305848..305931Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 305849..305931 -
1622930845.5399184-CDS-C-linearis_contig99:306620..3067071622930845.5399184-CDS-C-linearis_contig99:306620..306707Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 306621..306707 -
1690881279.452587-CDS-C-linearis_contig99:306620..3067071690881279.452587-CDS-C-linearis_contig99:306620..306707Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 306621..306707 -
1622930845.556539-CDS-C-linearis_contig99:307072..3071951622930845.556539-CDS-C-linearis_contig99:307072..307195Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 307073..307195 -
1690881279.4634955-CDS-C-linearis_contig99:307072..3071951690881279.4634955-CDS-C-linearis_contig99:307072..307195Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 307073..307195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17168.1

>prot_C-linearis_contig99.17168.1 ID=prot_C-linearis_contig99.17168.1|Name=mRNA_C-linearis_contig99.17168.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=200bp
TREAPPPPSSRPRISSPGTMPFSLTENIPFLALPVTLITLKITYDVLPPV
AFLALVAVAIGCYMFYAGNKSPAAQRTAKKAEATADSLIQELTREEDRAK
EEAARKQAAKDRKAAAKKQQEAARKAAVAAKEAAAAKLLAQQEEESKPRS
APQTQSSGKKQPKKKQPKKQPKAAQQVEEEDSDDEDDFLLRMADLERAR*
back to top

mRNA from alignment at C-linearis_contig99:302401..307195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17168.1 ID=mRNA_C-linearis_contig99.17168.1|Name=mRNA_C-linearis_contig99.17168.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4795bp|location=Sequence derived from alignment at C-linearis_contig99:302401..307195- (Chordaria linearis ClinC8C monoicous)
ACGAGAGAAGCTCCACCCCCTCCAAGCTCTCGTCCCCGCATCTCATCTCC
AGGAACGATGCCTTTCTCCCTGACAGAGAACATCCCCTTCCTCGCGCTCC
CCGTGACGCTGATCACCCTCAAGGTGTGTAGACTAGATGGTCCACTCAAA
ACGGGAGCGTTTTTCTTTCGGAAGGATGCGGTTAGGCTAATCTAAGGGAA
GCGCCAACTCCTTTCGCCTCTTGTCGATCACGTTGTATCCGGTTCCCCTC
TCTTGCTTGATCTCGGTCAGACGATGCTAGTCATGGACATTTGATGGAGT
GGGAATGAACGGCGCTCATGCGTTGCACGAGAATTGCACGCATCGCGCAT
AGATGGCGGATGGTTTCTGCCAGCACAGCAGCCATATTTTGTATTTTGTG
TGCGGTTCTGAGAGGTGTCTCTCGCTCTCGGCTTTTCCCCATCGAACCAC
CCTATCCCCGGTCGTGCTCCTCCCGTTTGCGGCTACAGATCACGTATGAT
GTGCTTCCTCCAGTGGCCTTCTTGGCGCTCGTAGCTGTGGCCATAGGCTG
CTACATGTTCTACGCAGGCAACAAGGTGGGTTTTGTTGTATAATATGTAC
GCCGTTCTAGAACTGCATCTTGGAACCAGAGACGGCACGGCGATTCCCGG
TCGAGCGTCCACACCGCTGAGTTTGTCCGCTCACGCGGTTTTACCGGCAC
ACGGCGGTTGTTTGTATTCGAAGACGCGTTCTCTTTCGCGTTCGCAGCGG
TAGAATTCTGTTGCTGTGCTGAACGCTTTGGCGAGAGCCACACGGGCGCG
TTGCCTAGCTGCTAGCTGGGGCTGCGTGGTTGCCTTTTTCCTTTTTCGCA
AACCTAATCTAAAAGCTTTTTGTGCTCCGGTCCGTCCAGGTCGTCGTTAG
GAAAAATAGATGATATCATATTATAGTTACAAGTCTAGACTGCTAGGTGT
AAACAGCGGCCCGGTAGCTTGCTATGAAGAGCTGCTTTCTGTCAGCTGTG
GCCACTTTTCGGAAGCACCTGTTCCTCTAGTCTAAGTGGCATCTTCCCTT
CTGTATATCAGATATTTTGATCCTGGCATCCGCCTGGCTCTCCGCGCAAG
GGATGTGTATCGGCCACTTCTATGTTTGTGTGATTTCTTTGCTTCTGCTG
GTGCTTTATAAGTGTTCCTCTTGCCTACAGCTGTACTCTTTTTGACATTG
TTGTGGACATGCTGTCAATGTCAAAATCGATGTTGCGCCGTTGTTGTGCC
GTTATCGCGAGCAGAGCCCAGCGGCCCAGAGGACGGCTAAGAAGGCCGAG
GCCACTGCGGACAGTCTTATCCAGGAGCTCACCCGGGAGGAAGACAGGTG
AACACACCCCGGTGGTCTAGTGGATACCCACGCAGTCTACTAAGCGCCAG
GTCATGGGTTCGAGTCCCGACGAAGTGAGTTTTTTTTCTCACTTTCGTTC
CTGGTACATTGAAAACTTGCTGCATAGCTTGTGAGTAAATACTACTTTCG
ACTTCGTTGTTGACGAGGGTAAGGAGTGCTGAACCCTGCTCGCGATAAAA
AACATCAAAGGCATGCACCGCAGGAGGTAGGTGGAGACATCCCCTCTTGT
GTGACCCCGCATGGTAGCCTATCTAGTTGTAGTGAAGAGGAGGAGGCAGG
CTACGAAAAAACATTAATGAGGGAGAAAAAAAAACTGTCATACGAAGTAT
GCATGCAGGAGGACGCAGACAGCTAGACAGAAACGCAGGAGCCGTAATTT
TGGTTTCAGACAAGAGGTCGACCTGAAATACCCTCGTGTTCAAGTGTGCT
CGTGCGGGCGCATCATCGTGGCCGCCTTTCTCCGTGGTTCGCTGGTTGTG
GTGCGACCATGCCGTTGCGCGCGAATGTTGGCATCTGTGCGTGTTTGTCG
CATACAGCTGTCTCTTGTCGACCAAATAACACCAGCATCTAGGTTGGGCT
TGAGTGATGGGTGAGATGCGGCGTACAGGCGAGAAACGCAATTCAATCTG
CACAGAGCTGCTGTCTGTCACTACTGCTGTAGATCGCTCGACGGCTCAAC
CAGGGAGCTCCACACCCTAACGTAATACCTGCATGCGTTTCAGCGCAGCA
CACGCTATTTAACTGTTAGTGTGTGTGTTTGTTTTCTTCCCATTTATTTT
GGCGACAGTCCCTTTCCGATCAAGGCCAGACGTGTACTACACGTTGCGGT
GTATTTAGAGTACTACACTTGTTCGGTGCATTTTTCTGTACAACTAGAAC
CAACCGGGGTCACACAGGAGGGGGTAAACACTGGGGCTTTTTTCTTCTTT
TTCTGTTTCTTTTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTAGATT
TTATCGCGAGAAGGGTGCAGCCATCCATTTCCCTCGTCAACGTGCTAAGT
CGAAGTTTGGTACTCACGAGCTTTTTCAGCTATGTTATCGCTTTCACCTG
CAAAGTCGCAAAATAAACACCTTTGCTTGGGATTGAACTCCAGACTTTGC
TGCTAGTGGGTTCGAGCTTAAACCACTAGTCCACCGGGGCGTCCGGTAAG
TAGCCCCGCCCTTTCTCTTGAGTTAGCGTCGTTGGAAATCCACCGCTGTC
ATCCTTGCAGCTAAGCAATACAGAAGGGTATTTAGTTATTTACCCATCTG
TTTCTCCTCAGTTAGCCATTCGTACCAGCGGTGAGCTTTGTACGCCGACG
CCGACATCGACCGCGAACGTCAACCCATCTCAACTATTCAGCTACCGCAG
CGTACCTCCACCTCCTTTTTTGTTCGTGGTTTGTTTGGGAGTATTGTATC
GAAGAAAGGTTAAGCTAGCTTTCGTACGTGCATCCCAAACTCTCACAGTC
AAAGTCTCAAACGAGGACGAACGAGCAAACGACTGACGTTGTCGTCGCGG
GCTGCGGTGCGGTGTGCTATTTTGCTCTTGGCGATTCATCGGTGACTGCC
ATTTTCACATTATTATACTCAGTATATGGTAGATATGCCGTAAACAGCAA
GCTTCTCTTTGGCTGCATTACTCTGCGCTGTGACTTCGTGCACCCAGGGC
AAAGGAGGAGGCGGCCAGGAAGCAGGCGGCCAAGGACAGGAAAGCAGCGG
CAAAGAAGCAGCAGGAGGTGAGTTGTGTTGTGTTGGTGTCTTGGATCTTT
CTCATCGCTCGCTTGAGAGGTGCCATGAACCACGCGTCGGTGTGTGTAGG
AGCTTCTTCCGCATCGACTGGTACCTTGGCATTCGGGCGTATCCCGTTCT
GTTGTCAAAGAAGTCTATTCGTGCAACACGACTCTGGCGGCGATAAGGGA
TTCGGAAGGAAGGAAGCAAGGGAGGGATGAATAGGGCACTGAAGTGATGG
ATCGAAACACGAAAAATAGCATCAAGATGTTTGTCTCATCTCCACCCTCA
CGGTCCAGTCACGCCAGCCGGACTGTTGTGTAACGTGAAAGGCGAGAGAC
GGCCTTGACCCACTCGATCGATCTGTTCGATAGTCACAGGCTGTGATTTT
AGGCCATCTGGAGTTGCCTTTCGCACGTCACGTGTTTTTTGTTTTTTTAG
GTAGTCAGAGCGGGTGCGTCCCGACGATCGATGGAATCGACGGTAGTTTT
TGCGTTGACCCTGTTTGCGTCGGAATAACTCTAAGGGGGATGAGCCCTGG
CATTCTGGCATTCGCATACCGGGATCTAAGCACATACCCTGGACCGACTT
TTAAAGCTTGACTAGTCCGTAACGAAGAGGGTTCCAATACCAAACGATAC
GTTTTCGGACAACCATCCTGTCAACGAGATGTTTCCGACGCCGCCCTTTT
TGGCACTGACATGACAGTCTCGTTGTTGTTGTCACGGAGTATAAGAAAGA
GCTTAGAAAGAGCTTTGAAAGTCGGTCCAGGGGGTGTGCTTAGACCCCGA
TTCTTGCGGTACTTACTCAACCTCAGCCAAAAGTGTTGATACGCATTGCT
GTAAATAACGGTACGTGCATAGGTAATGGCAGTCGGTGCATTGTATCAGT
GATCGGAATATTGTCCACGCCTACTTTGTGCAGGTCATGCATAGGACGAT
AGGGTAACATGTTGTTCCACCCCTGTCCCTCTCGCTTTCCGTGCAGGCTG
CCCGCAAGGCTGCAGTTGCCGCCAAGGAAGCCGCTGCCGCCAAGTTGCTG
GCGCAGCAGGAGGAGGAGAGCAAGCCTCGCTCCGCCCCGCAGACACAGTC
TTCCGGCAAGAAGCAGCCCAAGAAGAAGCAGCCCAAGAAGCAGCCCAAGG
CGGCACAACAGGTGAAACACAAAATACTTGGAAGGCTGCACATGGCAATA
TTGATTTTGATGCTGCAGCACGCTATGCCGACCCGAAGGTGGATAACAGA
TGCAGGTAAAAGAAGATAAAGTTCGTGCTTCGAAGTATATATAGACGCAG
TATGTAAGGGTTCACTTGTTACAACTACTGCGCGAATACAAGTCCCTGGT
TGTTGATGGTCTGGCCTAGTCTACGCGGTGCATCTGATGCACGTGATAAC
TGATTGTTTCGTGTGCGTTCCCCTCTCCCGTGCCCCTGCGATGTTTGTGT
GCATGTATGTATGCATGCATCATTGTGCGGTATGTATGTATGCGGTGGTC
CTCCTCCTTCCGCTGCTGCTGCGGGCTGGCTCCGATTGGGCGGGCTGCGG
ATTGCGTGGATCTCATTGGCCGGTCGGAAATATGGATGGATCTACTGGCT
GGTGTTGTGTTGTGTAACTGAAGGTTGAAGAGGAGGACTCGGACGATGAG
GATGACTTCCTGCTGCGCATGGCGGACCTCGAGCGGGCGAGGTGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig99:302401..307195-

>mRNA_C-linearis_contig99.17168.1 ID=mRNA_C-linearis_contig99.17168.1|Name=mRNA_C-linearis_contig99.17168.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at C-linearis_contig99:302401..307195- (Chordaria linearis ClinC8C monoicous)
ACGAGAGAAGCTCCACCCCCTCCAAGCTCTCGTCCCCGCATCTCATCTCC
AGGAACGATGCCTTTCTCCCTGACAGAGAACATCCCCTTCCTCGCGCTCC
CCGTGACGCTGATCACCCTCAAGACGAGAGAAGCTCCACCCCCTCCAAGC
TCTCGTCCCCGCATCTCATCTCCAGGAACGATGCCTTTCTCCCTGACAGA
GAACATCCCCTTCCTCGCGCTCCCCGTGACGCTGATCACCCTCAAGATCA
CGTATGATGTGCTTCCTCCAGTGGCCTTCTTGGCGCTCGTAGCTGTGGCC
ATAGGCTGCTACATGTTCTACGCAGGCAACAAGATCACGTATGATGTGCT
TCCTCCAGTGGCCTTCTTGGCGCTCGTAGCTGTGGCCATAGGCTGCTACA
TGTTCTACGCAGGCAACAAGAGCCCAGCGGCCCAGAGGACGGCTAAGAAG
GCCGAGGCCACTGCGGACAGTCTTATCCAGGAGCTCACCCGGGAGGAAGA
CAGAGCCCAGCGGCCCAGAGGACGGCTAAGAAGGCCGAGGCCACTGCGGA
CAGTCTTATCCAGGAGCTCACCCGGGAGGAAGACAGGGCAAAGGAGGAGG
CGGCCAGGAAGCAGGCGGCCAAGGACAGGAAAGCAGCGGCAAAGAAGCAG
CAGGAGGGCAAAGGAGGAGGCGGCCAGGAAGCAGGCGGCCAAGGACAGGA
AAGCAGCGGCAAAGAAGCAGCAGGAGGCTGCCCGCAAGGCTGCAGTTGCC
GCCAAGGAAGCCGCTGCCGCCAAGTTGCTGGCGCAGCAGGAGGAGGAGAG
CAAGCCTCGCTCCGCCCCGCAGACACAGTCTTCCGGCAAGAAGCAGCCCA
AGAAGAAGCAGCCCAAGAAGCAGCCCAAGGCGGCACAACAGGCTGCCCGC
AAGGCTGCAGTTGCCGCCAAGGAAGCCGCTGCCGCCAAGTTGCTGGCGCA
GCAGGAGGAGGAGAGCAAGCCTCGCTCCGCCCCGCAGACACAGTCTTCCG
GCAAGAAGCAGCCCAAGAAGAAGCAGCCCAAGAAGCAGCCCAAGGCGGCA
CAACAGGTTGAAGAGGAGGACTCGGACGATGAGGATGACTTCCTGCTGCG
CATGGCGGACCTCGAGCGGGCGAGGTGAGTTGAAGAGGAGGACTCGGACG
ATGAGGATGACTTCCTGCTGCGCATGGCGGACCTCGAGCGGGCGAGGTGA
back to top