prot_C-linearis_contig99.17168.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig99.17168.1
Unique Name	prot_C-linearis_contig99.17168.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	200

Homology

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BLAST of mRNA_C-linearis_contig99.17168.1 vs. uniprot
Match: D7G7U7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U7_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.570e-37
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 0

Query:   20 MPFSLTENIPFLALPVTLITLKITYDVLPPVAFLALVAVAIGCYMFYAGNKSPAAQRTAKKAEATADSLIQELTREEDRAKE 101
            MPFSLTEN+PFLALP+ LITLK+TYDVLP +AFLALVAVA+GCYMFYAG  SPAAQRTAKKAEATADSLI+ELTREEDRAKE
Sbjct:    1 MPFSLTENLPFLALPLALITLKVTYDVLPFMAFLALVAVAVGCYMFYAGKSSPAAQRTAKKAEATADSLIRELTREEDRAKE 82

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig99.17168.1 vs. uniprot

BLAST of mRNA_C-linearis_contig99.17168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

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POSITION

0


Match Name	E-value	Identity	Description
D7G7U7_ECTSI	2.570e-37	87.80	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 78..126
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 41..45
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 46..66
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..20
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 67..199
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 21..40
None	No IPR available	TMHMM	TMhelix		coord: 46..68

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig99	contig	C-linearis_contig99:302401..307195 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig99.17168.1	mRNA_C-linearis_contig99.17168.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig99 302401..307195 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig99.17168.1 ID=prot_C-linearis_contig99.17168.1|Name=mRNA_C-linearis_contig99.17168.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=200bp
TREAPPPPSSRPRISSPGTMPFSLTENIPFLALPVTLITLKITYDVLPPV
AFLALVAVAIGCYMFYAGNKSPAAQRTAKKAEATADSLIQELTREEDRAK
EEAARKQAAKDRKAAAKKQQEAARKAAVAAKEAAAAKLLAQQEEESKPRS
APQTQSSGKKQPKKKQPKKQPKAAQQVEEEDSDDEDDFLLRMADLERAR*