prot_C-linearis_contig96.17059.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig96.17059.1
Unique Name	prot_C-linearis_contig96.17059.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	532

Homology

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BLAST of mRNA_C-linearis_contig96.17059.1 vs. uniprot
Match: A0A6H5L4D8_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D8_9PHAE)

HSP 1 Score: 423 bits (1087), Expect = 1.920e-140
Identity = 288/392 (73.47%), Postives = 308/392 (78.57%), Query Frame = 0

Query:  162 SSMRLPWMGVLAATAVAGGAAAVYPRGARSNVTWKEGSKQVSAKVGGLTVNVARAQNLKSVSTMSTQDPYVKAKLLVDGYQISEVRSGTHNNGGRNPDWTRRNNFFTFYVPSNVPLSKLAVVLEVYDSNSMSSDKMIGTCGQIPLNGIADGKMRWWTVTSGGQLQASAYSDVQFGEGKPPKNGGQCQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRNEYNSYVNGMNSAGRNQEVVSFEVWANGRYRD---RSSXXXXXXXXXXXXXYD------RKN----GGRKHGYGDRGG---YAVPAG---GYAAPTGTAPPXXXXXXXXXXXSAAFQSPNYRPPATAPSAPPAYPSTAYPPAAGVAGQPQAPPPYPGE--PQQG--YYN 530
            S+MRLPWMGVLAATAVA GAAA YPRGARS VTWKEGSKQVSA+VGGLTVNVA AQNLKSVSTMSTQDPYVKAKLLVDGYQ+SEV+SGTHNNGGRNP W  RNNFFTFYVPSNVPL KLAVVLE+YD N+MS+DKMIGTCG+IPL GIADGKMRWWTVTSGGQLQAS +SDV+F   K  K+GGQ Q  XXXXXXXXXXXXXXXXXXXXXXXXXX      SRNEYN+YVNGMN+AGRN EV+ +E WANGRYRD   R SXXXXXXXXXXXXX        RK+    GG +HGYGD  G   YA PAG   GYA PT   P             A FQSP+YRPPATAPSAPPAYP+TAYPPAA   GQ   PPPYP    PQQG  YY+
Sbjct:   94 SAMRLPWMGVLAATAVASGAAAAYPRGARSQVTWKEGSKQVSAQVGGLTVNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQVSEVKSGTHNNGGRNPSWAGRNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGIADGKMRWWTVTSGGQLQASVFSDVKFNSTKASKSGGQKQHXXXXXXXXXXXXXXXXXXXXXXXXXXX------SRNEYNNYVNGMNNAGRNHEVLPYEAWANGRYRDNRRRESXXXXXXXXXXXXXXXXXXXXXRKHQYGGGGSRHGYGDNRGHTKYAAPAGSNAGYAPPTALPP----YTYGAGGAPANFQSPDYRPPATAPSAPPAYPATAYPPAASAPGQXXXPPPYPRATAPQQGGVYYS 475

[Close]

BLAST of mRNA_C-linearis_contig96.17059.1 vs. uniprot
Match: D7G451_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G451_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 1.590e-103
Identity = 162/187 (86.63%), Postives = 172/187 (91.98%), Query Frame = 0

Query:  162 SSMRLPWMGVLAATAVAGGAAAVYPRGARSNVTWKEGSKQVSAKVGGLTVNVARAQNLKSVSTMSTQDPYVKAKLLVDGYQISEVRSGTHNNGGRNPDWTRRNNFFTFYVPSNVPLSKLAVVLEVYDSNSMSSDKMIGTCGQIPLNGIADGKMRWWTVTSGGQLQASAYSDVQFGEGKPPKNGGQCQ 348
            S+MRLPWMGVLAATAVAGGAAA YPRGARS VTWKEGSKQVSA+VGGLTVNVA AQNLKSVSTMSTQDPYVKAKLLVDGYQISEV+SGTHNNGGRNP W RRNNFFTFYVPSNVPL KLAVVLE+YD N+MS+DKMIGTCG+IPL GIADGKMRWWTVTSGGQLQAS +SDV+F   K  K+GGQ Q
Sbjct:  117 SAMRLPWMGVLAATAVAGGAAAAYPRGARSQVTWKEGSKQVSAQVGGLTVNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQISEVKSGTHNNGGRNPSWARRNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGIADGKMRWWTVTSGGQLQASVFSDVKFNSTKASKSGGQKQ 303

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig96.17059.1 vs. uniprot

BLAST of mRNA_C-linearis_contig96.17059.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L4D8_9PHAE	1.920e-140	73.47	C2 domain-containing protein n=1 Tax=Ectocarpus sp...	[more]
D7G451_ECTSI	1.590e-103	86.63	C2 domain-containing protein n=1 Tax=Ectocarpus si...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..92
None	No IPR available	PANTHER	PTHR47052	FAMILY NOT NAMED	coord: 202..530
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 46..66
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 27..45
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 7..26
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 166..185
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..6
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 186..531
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 67..165
None	No IPR available	SUPERFAMILY	49562	C2 domain (Calcium/lipid-binding domain, CaLB)	coord: 203..323
None	No IPR available	TMHMM	TMhelix		coord: 127..149
None	No IPR available	TMHMM	TMhelix		coord: 7..29
None	No IPR available	TMHMM	TMhelix		coord: 44..66
None	No IPR available	TMHMM	TMhelix		coord: 164..186
IPR000008	C2 domain	SMART	SM00239	C2_3c	coord: 208..318 e-value: 3.7E-6 score: 36.4
IPR000008	C2 domain	PFAM	PF00168	C2	coord: 209..311 e-value: 6.2E-11 score: 42.5
IPR000008	C2 domain	PROSITE	PS50004	C2	coord: 209..302 score: 13.801
IPR035892	C2 domain superfamily	GENE3D	2.60.40.150		coord: 203..377 e-value: 1.6E-16 score: 62.7

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig96	contig	C-linearis_contig96:649417..653669 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig96.17059.1	mRNA_C-linearis_contig96.17059.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig96 648684..654774 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig96.17059.1 ID=prot_C-linearis_contig96.17059.1|Name=mRNA_C-linearis_contig96.17059.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=532bp
MPDLKDFGGLGGLSGAAGGLGALASLAGGGRRGPGGGGGGGGLGGLGGLG
VGMLAGMAGGAAMGGGRNNNHYNNHRNDMVNLRNNYNNHRNNHCGGGGYH
SGHGGHGGFGGGGGFGHHGGYGYGRGGVGVGLGGMGMGGGYGMGGMGGHH
GYRGGHHGYRGSSMRLPWMGVLAATAVAGGAAAVYPRGARSNVTWKEGSK
QVSAKVGGLTVNVARAQNLKSVSTMSTQDPYVKAKLLVDGYQISEVRSGT
HNNGGRNPDWTRRNNFFTFYVPSNVPLSKLAVVLEVYDSNSMSSDKMIGT
CGQIPLNGIADGKMRWWTVTSGGQLQASAYSDVQFGEGKPPKNGGQCQQQ
YQQRPKKSKDKSKKKKKKKSKDKRRYGGGGGGSRNEYNSYVNGMNSAGRN
QEVVSFEVWANGRYRDRSSSSSDSSSSSSDSDYDRKNGGRKHGYGDRGGY
AVPAGGYAAPTGTAPPGGYNYVAGGAPSAAFQSPNYRPPATAPSAPPAYP
STAYPPAAGVAGQPQAPPPYPGEPQQGYYNP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000008	C2_dom
IPR035892	C2_domain_sf