mRNA_C-linearis_contig96.17059.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig96.17059.1 vs. uniprot
Match: A0A6H5L4D8_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D8_9PHAE) HSP 1 Score: 420 bits (1080), Expect = 2.820e-134 Identity = 287/392 (73.21%), Postives = 307/392 (78.32%), Query Frame = 1 Query: 580 SSMRLPWMGVLAATAVAGGAAAVYPRGARSNVTWKEGSKQVSAKVGGLTVNVARAQNLKSVSTMSTQDPYVKAKLLVDGYQISEVRSGTHNNGGRNPDWTRRNNFFTFYVPSNVPLSKLAVVLEVYDSNSMSSDKMIGTCGQIPLNGIADGKMRWWTVTSGGQLQASAYSDVQFGEGKPPKNGGQCQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRNEYNSYVNGMNSAGRNQEVVSFEVWANGRYRD---RSSXXXXXXXXXXXXXYD------RKN----GGRKHGYGDRGG---YAVPAG---GYAAPTGTAPPXXXXXXXXXXXSAAFQSPNYRPPATAPSAPPAYPSTAYPPAAGVAGQPQAXPPYPGE--PQQG--YYN 1686
S+MRLPWMGVLAATAVA GAAA YPRGARS VTWKEGSKQVSA+VGGLTVNVA AQNLKSVSTMSTQDPYVKAKLLVDGYQ+SEV+SGTHNNGGRNP W RNNFFTFYVPSNVPL KLAVVLE+YD N+MS+DKMIGTCG+IPL GIADGKMRWWTVTSGGQLQAS +SDV+F K K+GGQ Q XXXXXXXXXXXXXXXXXXXXXXXXXX SRNEYN+YVNGMN+AGRN EV+ +E WANGRYRD R SXXXXXXXXXXXXX RK+ GG +HGYGD G YA PAG GYA PT P A FQSP+YRPPATAPSAPPAYP+TAYPPAA GQ PPYP PQQG YY+
Sbjct: 94 SAMRLPWMGVLAATAVASGAAAAYPRGARSQVTWKEGSKQVSAQVGGLTVNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQVSEVKSGTHNNGGRNPSWAGRNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGIADGKMRWWTVTSGGQLQASVFSDVKFNSTKASKSGGQKQHXXXXXXXXXXXXXXXXXXXXXXXXXXX------SRNEYNNYVNGMNNAGRNHEVLPYEAWANGRYRDNRRRESXXXXXXXXXXXXXXXXXXXXXRKHQYGGGGSRHGYGDNRGHTKYAAPAGSNAGYAPPTALPP----YTYGAGGAPANFQSPDYRPPATAPSAPPAYPATAYPPAASAPGQXXXPPPYPRATAPQQGGVYYS 475
BLAST of mRNA_C-linearis_contig96.17059.1 vs. uniprot
Match: D7G451_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G451_ECTSI) HSP 1 Score: 325 bits (832), Expect = 3.440e-99 Identity = 162/187 (86.63%), Postives = 172/187 (91.98%), Query Frame = 1 Query: 580 SSMRLPWMGVLAATAVAGGAAAVYPRGARSNVTWKEGSKQVSAKVGGLTVNVARAQNLKSVSTMSTQDPYVKAKLLVDGYQISEVRSGTHNNGGRNPDWTRRNNFFTFYVPSNVPLSKLAVVLEVYDSNSMSSDKMIGTCGQIPLNGIADGKMRWWTVTSGGQLQASAYSDVQFGEGKPPKNGGQCQ 1140
S+MRLPWMGVLAATAVAGGAAA YPRGARS VTWKEGSKQVSA+VGGLTVNVA AQNLKSVSTMSTQDPYVKAKLLVDGYQISEV+SGTHNNGGRNP W RRNNFFTFYVPSNVPL KLAVVLE+YD N+MS+DKMIGTCG+IPL GIADGKMRWWTVTSGGQLQAS +SDV+F K K+GGQ Q
Sbjct: 117 SAMRLPWMGVLAATAVAGGAAAAYPRGARSQVTWKEGSKQVSAQVGGLTVNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQISEVKSGTHNNGGRNPSWARRNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGIADGKMRWWTVTSGGQLQASVFSDVKFNSTKASKSGGQKQ 303 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17059.1 >prot_C-linearis_contig96.17059.1 ID=prot_C-linearis_contig96.17059.1|Name=mRNA_C-linearis_contig96.17059.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=532bp MPDLKDFGGLGGLSGAAGGLGALASLAGGGRRGPGGGGGGGGLGGLGGLGback to top mRNA from alignment at C-linearis_contig96:648684..654774+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17059.1 ID=mRNA_C-linearis_contig96.17059.1|Name=mRNA_C-linearis_contig96.17059.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6091bp|location=Sequence derived from alignment at C-linearis_contig96:648684..654774+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:648684..654774+ >mRNA_C-linearis_contig96.17059.1 ID=mRNA_C-linearis_contig96.17059.1|Name=mRNA_C-linearis_contig96.17059.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3192bp|location=Sequence derived from alignment at C-linearis_contig96:648684..654774+ (Chordaria linearis ClinC8C monoicous)back to top |