prot_C-linearis_contig96.17056.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig96.17056.1
Unique Nameprot_C-linearis_contig96.17056.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length464
Homology
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BLAST of mRNA_C-linearis_contig96.17056.1 vs. uniprot
Match: A0A6H5KTK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK9_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 3.200e-84
Identity = 196/354 (55.37%), Postives = 233/354 (65.82%), Query Frame = 0 
Query:    7 RSSVAVASVLLPLLFLAGDALLHPALPATSATSSNITPPQLGLHSSVSSPRHRYHGRRRRRPNDPKLGSHPAASSVXXXXXXXXRVSRLDDAVASAAERVEATVMSISSGSLDVSIFPSDARITRSGGSSAR-----GATLTIKASHVDPDTGTRRTWTATRSEKDFFALGVTLMGQLGGSTLKRRVPSPPPEGSSPSIYQVYLRKLIGLPDATTLPALYEFLDTPSELVQEPVLFGEVIDDAFWSGSATPYRSANPDDPRTTSSYSQHPNSPGADNGGXXXXXXXXXXXXXXXXXXXXGAAVGAVAARAASGREDGVGSVAKGAGAVADVAMEKAQALEREFELSRKARMAAG 355
            RS VA  + L+P L LA DALLHP    T A  +    P        S+   +Y   RR       + S  ++S  XXXXX   R SRL+DA++        T MS+++  LDV +   D R                  L+I+AS+V+P TGTRRTWTA+RSEKDFFALGVTLMG+L GS    +VP PPPEGSSP +++VYLR+LI +P  T+LPALYEFLD P +LVQEPVLFGEV+DD F  G A  YRSANPDDPRT SS S + N+   +  G    XXXXXXXXXXX     GAA+GA+AARAASGREDGVG+VAKGAGAVAD AMEKAQALEREFELSRKA+ AAG
Sbjct:    5 RSVVASTAALIPFLLLAADALLHPTRLTTPAKPAGSNKPGAAPVPQCSTLPQQYFCFRRTSKYRGDISSRCSSSXXXXXXXPRSRSSRLEDALSYT------TRMSLAAEGLDVWVVSDDGRTXXXXXXXXXXXXXXAKLLSIQASYVEPGTGTRRTWTASRSEKDFFALGVTLMGKLAGSAADAKVPGPPPEGSSPVVFEVYLRRLIDVPVVTSLPALYEFLDAPPDLVQEPVLFGEVVDDDFGGGRAKRYRSANPDDPRTASSSSAYGNNVDGNKSGATVAXXXXXXXXXXXV----GAAIGAIAARAASGREDGVGNVAKGAGAVADAAMEKAQALEREFELSRKAKTAAG 348
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BLAST of mRNA_C-linearis_contig96.17056.1 vs. uniprot
Match: D7G4B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B6_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 5.830e-77
Identity = 151/214 (70.56%), Postives = 172/214 (80.37%), Query Frame = 0 
Query:  142 LTIKASHVDPDTGTRRTWTATRSEKDFFALGVTLMGQLGGSTLKRRVPSPPPEGSSPSIYQVYLRKLIGLPDATTLPALYEFLDTPSELVQEPVLFGEVIDDAFWSGSATPYRSANPDDPRTTSSYSQHPNSPGADNGGXXXXXXXXXXXXXXXXXXXXGAAVGAVAARAASGREDGVGSVAKGAGAVADVAMEKAQALEREFELSRKARMAAG 355
            L+I+AS+V+  TGTRRTWTA+RSEKDFFALGVTLMG+L GS    +VP PPPEGSSP++++VYLR+LI +P  T+LPALYEFLD P +LVQEPVLFGEV+DD F  G A  YRSANPDDPRT SS S +    G D  G         XXXXXXXXX  GAA+GA+AARAASGREDGVG+VAKGAGAVAD AMEKAQALEREFELSRKA+ AAG
Sbjct:   41 LSIQASYVELGTGTRRTWTASRSEKDFFALGVTLMGKLAGSAADAKVPGPPPEGSSPAVFEVYLRRLIDVPVVTSLPALYEFLDAPPDLVQEPVLFGEVVDDDFGGGRAKRYRSANPDDPRTASSSSAY----GNDVDGNKSGATVAGXXXXXXXXXPVGAAIGAMAARAASGREDGVGNVAKGAGAVADAAMEKAQALEREFELSRKAKTAAG 250
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BLAST of mRNA_C-linearis_contig96.17056.1 vs. uniprot
Match: A0A835ZJG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJG0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.110e-7
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 0 
Query:  156 RRTWTATRSEKDFFALGVTLMGQLGGSTLKRRVPSPPPEGSSPSIYQVYLRKLIGLPDATTLPALYEFLDTPSELVQEPVLFGEVIDDAFWSGSATPYRSANPD 259
            RRTW+  RS+  F AL   ++  L   T    +  P P   + ++ + YL +L+    A   P LY FL  P ++V+EPVL GEV+D+  W+      RSA+PD
Sbjct:  236 RRTWSVVRSDAQFAALSDAILAALAAGTAPPPLRYPGPAAGADALER-YLAQLLRSGAALASPDLYAFLAAPPDVVEEPVLIGEVVDEDSWTDRRV--RSADPD 336
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17056.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KTK9_9PHAE3.200e-8455.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4B6_ECTSI5.830e-7770.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZJG0_9STRA2.110e-736.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 395..422
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..463
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.714

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:610971..615976 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17056.1mRNA_C-linearis_contig96.17056.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig96 609144..616017 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig96.17056.1 ID=prot_C-linearis_contig96.17056.1|Name=mRNA_C-linearis_contig96.17056.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=464bp
MVRPRSRSSVAVASVLLPLLFLAGDALLHPALPATSATSSNITPPQLGLH
SSVSSPRHRYHGRRRRRPNDPKLGSHPAASSVSSSSSSSSRVSRLDDAVA
SAAERVEATVMSISSGSLDVSIFPSDARITRSGGSSARGATLTIKASHVD
PDTGTRRTWTATRSEKDFFALGVTLMGQLGGSTLKRRVPSPPPEGSSPSI
YQVYLRKLIGLPDATTLPALYEFLDTPSELVQEPVLFGEVIDDAFWSGSA
TPYRSANPDDPRTTSSYSQHPNSPGADNGGSKSGATVAGAVVGGLVAGPL
GAAVGAVAARAASGREDGVGSVAKGAGAVADVAMEKAQALEREFELSRKA
RMAAGKAKQAVQKVDSEYSVRQRAKEAARRTARAAQRTSRDLRVSERAAR
AAKAAEQAAKRAAEAARKADEEHRLRERAGNAFRRVRSRVKRSVEKLEER
RKKNPGDPNNDGS*
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