mRNA_C-linearis_contig96.17056.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig96.17056.1 vs. uniprot
Match: A0A6H5KTK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK9_9PHAE) HSP 1 Score: 276 bits (707), Expect = 3.490e-79 Identity = 196/354 (55.37%), Postives = 233/354 (65.82%), Query Frame = 3 Query: 60 RSSVAVASVLLPLLFLAGDALLHPALPATSATSSNITPPQLGLHSSVSSPRHRYHGRRRRRPNDPKLGSHPAASSVXXXXXXXXRVSRLDDAVASAAERVEATVMSISSGSLDVSIFPSDARITRSGGSSAR-----GATLTIKASHVDPDTGTRRTWTATRSEKDFFALGVTLMGQLGGSTLKRRVPSPPPEGSSPSIYQVYLRKLIGLPDATTLPALYEFLDTPSELVQEPVLFGEVIDDAFWSGSATPYRSANPDDPRTTSSYSQHPNSPGADNGGXXXXXXXXXXXXXXXXXXXXGAAVGAVAARAASGREDGVGSVAKGAGAVADVAMEKAQALEREFELSRKARMAAG 1106
RS VA + L+P L LA DALLHP T A + P S+ +Y RR + S ++S XXXXX R SRL+DA++ T MS+++ LDV + D R L+I+AS+V+P TGTRRTWTA+RSEKDFFALGVTLMG+L GS +VP PPPEGSSP +++VYLR+LI +P T+LPALYEFLD P +LVQEPVLFGEV+DD F G A YRSANPDDPRT SS S + N+ + G XXXXXXXXXXX GAA+GA+AARAASGREDGVG+VAKGAGAVAD AMEKAQALEREFELSRKA+ AAG
Sbjct: 5 RSVVASTAALIPFLLLAADALLHPTRLTTPAKPAGSNKPGAAPVPQCSTLPQQYFCFRRTSKYRGDISSRCSSSXXXXXXXPRSRSSRLEDALSYT------TRMSLAAEGLDVWVVSDDGRTXXXXXXXXXXXXXXAKLLSIQASYVEPGTGTRRTWTASRSEKDFFALGVTLMGKLAGSAADAKVPGPPPEGSSPVVFEVYLRRLIDVPVVTSLPALYEFLDAPPDLVQEPVLFGEVVDDDFGGGRAKRYRSANPDDPRTASSSSAYGNNVDGNKSGATVAXXXXXXXXXXXV----GAAIGAIAARAASGREDGVGNVAKGAGAVADAAMEKAQALEREFELSRKAKTAAG 348
BLAST of mRNA_C-linearis_contig96.17056.1 vs. uniprot
Match: D7G4B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B6_ECTSI) HSP 1 Score: 253 bits (647), Expect = 4.860e-72 Identity = 151/214 (70.56%), Postives = 172/214 (80.37%), Query Frame = 3 Query: 465 LTIKASHVDPDTGTRRTWTATRSEKDFFALGVTLMGQLGGSTLKRRVPSPPPEGSSPSIYQVYLRKLIGLPDATTLPALYEFLDTPSELVQEPVLFGEVIDDAFWSGSATPYRSANPDDPRTTSSYSQHPNSPGADNGGXXXXXXXXXXXXXXXXXXXXGAAVGAVAARAASGREDGVGSVAKGAGAVADVAMEKAQALEREFELSRKARMAAG 1106
L+I+AS+V+ TGTRRTWTA+RSEKDFFALGVTLMG+L GS +VP PPPEGSSP++++VYLR+LI +P T+LPALYEFLD P +LVQEPVLFGEV+DD F G A YRSANPDDPRT SS S + G D G XXXXXXXXX GAA+GA+AARAASGREDGVG+VAKGAGAVAD AMEKAQALEREFELSRKA+ AAG
Sbjct: 41 LSIQASYVELGTGTRRTWTASRSEKDFFALGVTLMGKLAGSAADAKVPGPPPEGSSPAVFEVYLRRLIDVPVVTSLPALYEFLDAPPDLVQEPVLFGEVVDDDFGGGRAKRYRSANPDDPRTASSSSAY----GNDVDGNKSGATVAGXXXXXXXXXPVGAAIGAMAARAASGREDGVGNVAKGAGAVADAAMEKAQALEREFELSRKAKTAAG 250
BLAST of mRNA_C-linearis_contig96.17056.1 vs. uniprot
Match: A0A835ZJG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJG0_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 7.420e-7 Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 3 Query: 507 RRTWTATRSEKDFFALGVTLMGQLGGSTLKRRVPSPPPEGSSPSIYQVYLRKLIGLPDATTLPALYEFLDTPSELVQEPVLFGEVIDDAFWSGSATPYRSANPD 818
RRTW+ RS+ F AL ++ L T + P P + ++ + YL +L+ A P LY FL P ++V+EPVL GEV+D+ W+ RSA+PD
Sbjct: 236 RRTWSVVRSDAQFAALSDAILAALAAGTAPPPLRYPGPAAGADALER-YLAQLLRSGAALASPDLYAFLAAPPDVVEEPVLIGEVVDEDSWTDRRV--RSADPD 336 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17056.1 >prot_C-linearis_contig96.17056.1 ID=prot_C-linearis_contig96.17056.1|Name=mRNA_C-linearis_contig96.17056.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=464bp MVRPRSRSSVAVASVLLPLLFLAGDALLHPALPATSATSSNITPPQLGLHback to top mRNA from alignment at C-linearis_contig96:609144..616017- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17056.1 ID=mRNA_C-linearis_contig96.17056.1|Name=mRNA_C-linearis_contig96.17056.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6874bp|location=Sequence derived from alignment at C-linearis_contig96:609144..616017- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:609144..616017- >mRNA_C-linearis_contig96.17056.1 ID=mRNA_C-linearis_contig96.17056.1|Name=mRNA_C-linearis_contig96.17056.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2784bp|location=Sequence derived from alignment at C-linearis_contig96:609144..616017- (Chordaria linearis ClinC8C monoicous)back to top |