prot_C-linearis_contig96.17028.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig96.17028.1
Unique Nameprot_C-linearis_contig96.17028.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length214
Homology
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: D7G481_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G481_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 3.590e-86
Identity = 142/214 (66.36%), Postives = 165/214 (77.10%), Query Frame = 0
Query:    1 PLLWSLIIRQCQLSSLIPVAGLLHHLEGMMGLRVHEVAGLALAGVERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAITRTWRAGKTTDNNTTGGKRGCTILECTTRPRVRDGPVDGYFSDGAACVSRRAG 214
            PLLWSL  RQCQL SL+PVAGLLHHL+G++GL +H + GL LAGVERVLADARCL TLTI  C LA LPRLQSGSIE+LD+S+N +ESA+GLE LFRLKELNLAGN I TL+ LRPL+ LG G LREL+LD NPV+N P RYRESV  + PSIQLLDG+A ++ WR    T  NT G + G     C+T PRVR+   +GYFSDGA   SRRAG
Sbjct:    4 PLLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGIDGLTLAGVERVLADARCLCTLTIRHCRLARLPRLQSGSIEVLDISNNAIESAAGLETLFRLKELNLAGNRIRTLSGLRPLVPLGTGRLRELNLDSNPVQNTP-RYRESVLAVFPSIQLLDGIAKSQKWRMRTATKTNTVG-EEGHDRRACSTPPRVRNAFSEGYFSDGATWNSRRAG 215          
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: A0A6H5KR55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR55_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 5.830e-83
Identity = 139/213 (65.26%), Postives = 164/213 (77.00%), Query Frame = 0
Query:    2 LLWSLIIRQCQLSSLIPVAGLLHHLEGMMGLRVHEVAGLALAGVERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAITRTWRAGKTTDNNTTGGKRGCTILECTTRPRVRDGPVDGYFSDGAACVSRRAG 214
            LLWSL  RQCQL SL+PVAGLLHHL+G++GL +H   GLALAG+ERVLADARCL TLTI  CGLA LPRLQSGSIE+LD S+N +ESA+GLE LFRL+ELNLAGN I TL+DLRPL+ LG G LREL+L+ NPV++ P RYRESV  + PSIQLLDG+A ++ WR    T  N  G + G     C+T PRVR+   +GYFSDGA   SRRAG
Sbjct:   89 LLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGTDGLALAGIERVLADARCLCTLTIRDCGLARLPRLQSGSIEVLDFSNNAIESAAGLETLFRLQELNLAGNRIRTLSDLRPLLPLGTGRLRELNLENNPVQDSP-RYRESVLAVFPSIQLLDGIAKSQKWRMRTATKPNMAG-EEGHNRRACSTPPRVRNAFAEGYFSDGATWNSRRAG 299          
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: A0A0L0SBP9_ALLM3 (Uncharacterized protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SBP9_ALLM3)

HSP 1 Score: 57.0 bits (136), Expect = 6.240e-6
Identity = 56/165 (33.94%), Postives = 81/165 (49.09%), Query Frame = 0
Query:    2 LLWSLIIRQCQLSSLIPVAGLLHHLEGMMG----LRVHEVAGLALAGVERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAIT 162
            L+ SL +R CQL+++ P+A L H  E  +G     R+ ++A L L    RVL DA C +   +       +P      +  L+LS N+L S   +  L R+ EL LA N+++    +  L  L A  L  L L  N        YR  V   +P IQ+LDGVA+T
Sbjct:  576 LVTSLSLRNCQLTTVSPLADLAHLEELFIGGNRLTRIDDLAHLPL----RVL-DASCNAITAV------DVPARAFAKLTHLNLSSNRLTSLDMVRTLPRVTELYLAHNHVTDSGHMNALAVLPA--LHVLDLTGNAFIGAVPHYRAYVIYCVPLIQVLDGVAVT 727          
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: R7VI33_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VI33_CAPTE)

HSP 1 Score: 55.5 bits (132), Expect = 1.150e-5
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 0
Query:   46 ERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAITRT-------WRAGK 169
            E++L D R LS L              S S+++L+++ N+L+S   L  L  L + ++A N +S + +L   ++      R L L  NPV N  S+YR+ V  + PS+++LDG  IT T       W+A K
Sbjct:  135 EKLLFDPRSLSAL--------------SRSLQVLNVTGNRLDSLQDLFSLTELMQFSVADNQLSDIKELAHFLTSNRHLWR-LDLSGNPVCN-KSKYRDRVIIMSPSLEVLDGKEITDTARQFLTSWQANK 249          
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: UPI00186483C2 (geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Elopomorpha TaxID=32521 RepID=UPI00186483C2)

HSP 1 Score: 54.3 bits (129), Expect = 4.480e-5
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 0
Query:   76 IEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSI 153
            +E+L++ DN +E+  GL  L RL+EL+L  N IS L++L+PL S     L  L L  NPV   P+   E +A LLPS+
Sbjct:  503 LEVLEVDDNAIETLPGLYHLPRLEELSLRNNQISRLSELKPLSSCPK--LTRLDLRGNPVTQTPNLQSE-LAELLPSV 577          
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: UPI00106C733E (leucine-rich repeat and guanylate kinase domain-containing protein-like isoform X1 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C733E)

HSP 1 Score: 53.9 bits (128), Expect = 6.480e-5
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 0
Query:   76 IEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAIT 162
            +++LDLS N + S  GL+    L+E+NL GN I  + ++R +  L    LR+L+  RNP++ + S YR S+   L +++ LDGV +T
Sbjct:  245 LKVLDLSCNYIRSLKGLQEHEFLQEINLEGNQIIDIAEIRYIRELRL--LRKLNFQRNPIQEM-SDYRLSILFRLQTLKNLDGVDVT 328          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G481_ECTSI3.590e-8666.36Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KR55_9PHAE5.830e-8365.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L0SBP9_ALLM36.240e-633.94Uncharacterized protein n=2 Tax=Allomyces macrogyn... [more]
R7VI33_CAPTE1.150e-532.06Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
UPI00186483C24.480e-543.59geranylgeranyl transferase type-2 subunit alpha n=... [more]
UPI00106C733E6.480e-537.93leucine-rich repeat and guanylate kinase domain-co... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14580LRR_9coord: 76..164
e-value: 2.2E-8
score: 33.8
NoneNo IPR availablePANTHERPTHR18849LEUCINE RICH REPEAT PROTEINcoord: 8..166
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 49..164
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 40..167
e-value: 4.9E-22
score: 79.8
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 97..118
score: 8.728
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 75..96
score: 7.55
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 124..145
score: 5.995

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:150670..152018 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17028.1mRNA_C-linearis_contig96.17028.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig96 150670..152018 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig96.17028.1 ID=prot_C-linearis_contig96.17028.1|Name=mRNA_C-linearis_contig96.17028.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=214bp
PLLWSLIIRQCQLSSLIPVAGLLHHLEGMMGLRVHEVAGLALAGVERVLA
DARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKE
LNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLL
PSIQLLDGVAITRTWRAGKTTDNNTTGGKRGCTILECTTRPRVRDGPVDG
YFSDGAACVSRRAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt