mRNA_C-linearis_contig96.17028.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: D7G481_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G481_ECTSI) HSP 1 Score: 263 bits (672), Expect = 3.590e-86 Identity = 142/214 (66.36%), Postives = 165/214 (77.10%), Query Frame = 1 Query: 1 PLLWSLIIRQCQLSSLIPVAGLLHHLEGMMGLRVHEVAGLALAGVERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAITRTWRAGKTTDNNTTGGKRGCTILECTTRPRVRDGPVDGYFSDGAACVSRRAG 642
PLLWSL RQCQL SL+PVAGLLHHL+G++GL +H + GL LAGVERVLADARCL TLTI C LA LPRLQSGSIE+LD+S+N +ESA+GLE LFRLKELNLAGN I TL+ LRPL+ LG G LREL+LD NPV+N P RYRESV + PSIQLLDG+A ++ WR T NT G + G C+T PRVR+ +GYFSDGA SRRAG
Sbjct: 4 PLLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGIDGLTLAGVERVLADARCLCTLTIRHCRLARLPRLQSGSIEVLDISNNAIESAAGLETLFRLKELNLAGNRIRTLSGLRPLVPLGTGRLRELNLDSNPVQNTP-RYRESVLAVFPSIQLLDGIAKSQKWRMRTATKTNTVG-EEGHDRRACSTPPRVRNAFSEGYFSDGATWNSRRAG 215
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: A0A6H5KR55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR55_9PHAE) HSP 1 Score: 258 bits (659), Expect = 5.830e-83 Identity = 139/213 (65.26%), Postives = 164/213 (77.00%), Query Frame = 1 Query: 4 LLWSLIIRQCQLSSLIPVAGLLHHLEGMMGLRVHEVAGLALAGVERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAITRTWRAGKTTDNNTTGGKRGCTILECTTRPRVRDGPVDGYFSDGAACVSRRAG 642
LLWSL RQCQL SL+PVAGLLHHL+G++GL +H GLALAG+ERVLADARCL TLTI CGLA LPRLQSGSIE+LD S+N +ESA+GLE LFRL+ELNLAGN I TL+DLRPL+ LG G LREL+L+ NPV++ P RYRESV + PSIQLLDG+A ++ WR T N G + G C+T PRVR+ +GYFSDGA SRRAG
Sbjct: 89 LLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGTDGLALAGIERVLADARCLCTLTIRDCGLARLPRLQSGSIEVLDFSNNAIESAAGLETLFRLQELNLAGNRIRTLSDLRPLLPLGTGRLRELNLENNPVQDSP-RYRESVLAVFPSIQLLDGIAKSQKWRMRTATKPNMAG-EEGHNRRACSTPPRVRNAFAEGYFSDGATWNSRRAG 299
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: A0A0L0SBP9_ALLM3 (Uncharacterized protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SBP9_ALLM3) HSP 1 Score: 57.0 bits (136), Expect = 6.240e-6 Identity = 56/165 (33.94%), Postives = 81/165 (49.09%), Query Frame = 1 Query: 4 LLWSLIIRQCQLSSLIPVAGLLHHLEGMMG----LRVHEVAGLALAGVERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAIT 486
L+ SL +R CQL+++ P+A L H E +G R+ ++A L L RVL DA C + + +P + L+LS N+L S + L R+ EL LA N+++ + L L A L L L N YR V +P IQ+LDGVA+T
Sbjct: 576 LVTSLSLRNCQLTTVSPLADLAHLEELFIGGNRLTRIDDLAHLPL----RVL-DASCNAITAV------DVPARAFAKLTHLNLSSNRLTSLDMVRTLPRVTELYLAHNHVTDSGHMNALAVLPA--LHVLDLTGNAFIGAVPHYRAYVIYCVPLIQVLDGVAVT 727
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: R7VI33_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VI33_CAPTE) HSP 1 Score: 55.5 bits (132), Expect = 1.150e-5 Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 1 Query: 136 ERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAITRT-------WRAGK 507
E++L D R LS L S S+++L+++ N+L+S L L L + ++A N +S + +L ++ R L L NPV N S+YR+ V + PS+++LDG IT T W+A K
Sbjct: 135 EKLLFDPRSLSAL--------------SRSLQVLNVTGNRLDSLQDLFSLTELMQFSVADNQLSDIKELAHFLTSNRHLWR-LDLSGNPVCN-KSKYRDRVIIMSPSLEVLDGKEITDTARQFLTSWQANK 249
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: UPI00186483C2 (geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Elopomorpha TaxID=32521 RepID=UPI00186483C2) HSP 1 Score: 54.3 bits (129), Expect = 4.480e-5 Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 226 IEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSI 459
+E+L++ DN +E+ GL L RL+EL+L N IS L++L+PL S L L L NPV P+ E +A LLPS+
Sbjct: 503 LEVLEVDDNAIETLPGLYHLPRLEELSLRNNQISRLSELKPLSSCPK--LTRLDLRGNPVTQTPNLQSE-LAELLPSV 577
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: UPI00106C733E (leucine-rich repeat and guanylate kinase domain-containing protein-like isoform X1 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C733E) HSP 1 Score: 53.9 bits (128), Expect = 6.480e-5 Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 1 Query: 226 IEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAIT 486
+++LDLS N + S GL+ L+E+NL GN I + ++R + L LR+L+ RNP++ + S YR S+ L +++ LDGV +T
Sbjct: 245 LKVLDLSCNYIRSLKGLQEHEFLQEINLEGNQIIDIAEIRYIRELRL--LRKLNFQRNPIQEM-SDYRLSILFRLQTLKNLDGVDVT 328 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17028.1 >prot_C-linearis_contig96.17028.1 ID=prot_C-linearis_contig96.17028.1|Name=mRNA_C-linearis_contig96.17028.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=214bp PLLWSLIIRQCQLSSLIPVAGLLHHLEGMMGLRVHEVAGLALAGVERVLAback to top mRNA from alignment at C-linearis_contig96:150670..152018+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17028.1 ID=mRNA_C-linearis_contig96.17028.1|Name=mRNA_C-linearis_contig96.17028.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1349bp|location=Sequence derived from alignment at C-linearis_contig96:150670..152018+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:150670..152018+ >mRNA_C-linearis_contig96.17028.1 ID=mRNA_C-linearis_contig96.17028.1|Name=mRNA_C-linearis_contig96.17028.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at C-linearis_contig96:150670..152018+ (Chordaria linearis ClinC8C monoicous)back to top |