mRNA_C-linearis_contig96.17053.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17053.1
Unique NamemRNA_C-linearis_contig96.17053.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig96.17053.1 vs. uniprot
Match: D7G4B9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B9_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 4.870e-18
Identity = 77/185 (41.62%), Postives = 103/185 (55.68%), Query Frame = 1 
Query:  238 MAAVRGGSGGIEDELVGAAVQISELRQEKKRLTLARDSALVEIEEFKKIRVENSRQIQEHEARRAEVAATHAKELEDV-------KRNEREAIETAKKACAELQKRNEETTKLKTELSEAKAAAAETAAGPPV---NRRRVTATGLKPVSPGPVAAAAGGAGAPLRRGVRYAMDEGEEKDGNGGA 762
            MAA+RGG GGIED+L+GA  +IS+L +E K  T+ RD A    E        N+R ++ HE  R ++   HAKE+ED+       K+NEREAIETA+K  AEL+    E  K+KTEL                   NRRRVTA G++ +SP       GG   P   G +YAM++GE+ +G G A
Sbjct:    1 MAAMRGGRGGIEDDLIGAVKEISKLSKENK--TVKRDLASAVSE--------NARLVKTHEDSRKKLELAHAKEIEDMTKAIEDAKKNEREAIETAEKTFAELKNCTIEKEKIKTELGXXXXXXXXXXXXXXXXXXNRRRVTAIGVRQISP------VGGGAGPKGGGSQYAMEDGEDDNGRGTA 169
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4B9_ECTSI4.870e-1841.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:577617..580007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_002110.1
Exons4
Model size785
Cds size783
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17053.1prot_C-linearis_contig96.17053.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 577618..580007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.9961827-CDS-C-linearis_contig96:577617..5778901622930818.9961827-CDS-C-linearis_contig96:577617..577890Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 577618..577890 -
1690881266.0328906-CDS-C-linearis_contig96:577617..5778901690881266.0328906-CDS-C-linearis_contig96:577617..577890Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 577618..577890 -
1622930819.0113916-CDS-C-linearis_contig96:578302..5784011622930819.0113916-CDS-C-linearis_contig96:578302..578401Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 578303..578401 -
1690881266.0449998-CDS-C-linearis_contig96:578302..5784011690881266.0449998-CDS-C-linearis_contig96:578302..578401Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 578303..578401 -
1622930819.0482054-CDS-C-linearis_contig96:578735..5787751622930819.0482054-CDS-C-linearis_contig96:578735..578775Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 578736..578775 -
1690881266.057948-CDS-C-linearis_contig96:578735..5787751690881266.057948-CDS-C-linearis_contig96:578735..578775Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 578736..578775 -
1622930819.087283-CDS-C-linearis_contig96:579636..5800071622930819.087283-CDS-C-linearis_contig96:579636..580007Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 579637..580007 -
1690881266.0726354-CDS-C-linearis_contig96:579636..5800071690881266.0726354-CDS-C-linearis_contig96:579636..580007Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 579637..580007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17053.1

>prot_C-linearis_contig96.17053.1 ID=prot_C-linearis_contig96.17053.1|Name=mRNA_C-linearis_contig96.17053.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=261bp
HETGASRFVPLCFLAAISRGLERQHLTRCSASVHSAGKEGKKTACCGSFK
GREIDERGKPTLDSARAFVGRPAQQQQQTMAAVRGGSGGIEDELVGAAVQ
ISELRQEKKRLTLARDSALVEIEEFKKIRVENSRQIQEHEARRAEVAATH
AKELEDVKRNEREAIETAKKACAELQKRNEETTKLKTELSEAKAAAAETA
AGPPVNRRRVTATGLKPVSPGPVAAAAGGAGAPLRRGVRYAMDEGEEKDG
NGGAVDETEDG
back to top

mRNA from alignment at C-linearis_contig96:577617..580007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17053.1 ID=mRNA_C-linearis_contig96.17053.1|Name=mRNA_C-linearis_contig96.17053.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2391bp|location=Sequence derived from alignment at C-linearis_contig96:577617..580007- (Chordaria linearis ClinC8C monoicous)
CATGAAACCGGAGCCTCCCGCTTTGTCCCACTCTGCTTCCTTGCTGCTAT
CTCTCGCGGACTCGAACGCCAGCACCTCACACGGTGCAGTGCAAGTGTAC
ATTCCGCCGGAAAAGAAGGCAAGAAAACGGCTTGCTGTGGTTCCTTCAAA
GGCCGAGAAATCGACGAGAGAGGAAAGCCTACTCTAGATTCCGCGCGTGC
TTTTGTCGGGAGGCCTGCACAACAGCAACAGCAAACCATGGCAGCCGTGA
GAGGGGGAAGCGGCGGGATCGAGGACGAGCTCGTCGGCGCAGCCGTGCAG
ATATCGGAGCTACGCCAGGAAAAGAAGAGGCTGACGCTCGCTCGTGATTC
AGCCCTGGTCGAGATCGAGGAGTGAGTGTGCCATTCCGGGAATACCTAAC
TGCCACGACGGCTGTTCGACCAGAGCAGCTTGCTGTGTGTCGCTTATCGC
CTGGTCGAATAAGAGGAGCCAAGCAGGGTTGTTGTAACAAGGATATCGGT
TTGTGTAGCTCGAGCTGGGGCTGGAGGTCGTATTGGTTTTGTTTTGGAAC
GGCGTATTTTGTGTGACAGCTTCCGTTCATGACGCCGAATACCACCTACC
CCCCCGAAACGGGTTTGGTATGTGGGAAGTGTGCGTGTGTGTGTGTGTGT
GTGGCGATTGATACTCGTCTTTTAGCTGCGTCGCAACGCGCTGCCAAGTT
CATTCCACAAGTGCATCGTCAGCCCTTCGTGCCAAACCCATCTCGGAGAA
GTGGCAATCCATTTGTAAGGCTGTAACATTTCGGCCAGGCGATGGGTCTG
CAGAGCTGTTGTAGCTGCCTTGCTGCTGCTTCCGCACCACACAGCAGTAA
CGGAGACATGGTTGAAAAGGGAGTGGACGACTCGTCCTCCTCTCTGCACT
TTTCTCGCAAAAAAATTGCTCCCGATGCAAGGAGAAGTGTTTTACGGAGT
GCAAATTGGGCCACTCACACGCACACACCCAGCACCTCGCTCGATGCCTA
ACTGATTGTGTGCGTCACATCCCTCTCGCAGACTTGCAAAAACGGTCTTA
AATTAGGCACTCCCTCCCGTAGAAAAATTGACCCTAGCTTCGGTTCCGTC
GACCCCCCGTTGCATGCGTATTCACGTTCCATCGAATGAAATGCTCCATA
CCTCTGTCTGACAAGCTCCTCTCATGGTGGTCTGTCGGTCATTATGTGTC
TCTCTCAACGGACCCATCGCATGTTCCGCCAGGTTCAAGAAGATTCGCGT
GGAAAACTCCCGCCAAATCCAGGTGCGGGGACTTTTGTTTTCCGTTTGTC
TTTCCCTGTACAAGTCGGAAGGCTTTGAGGAAGTGGATTGAGCGAAATAA
CTGCGCACGGTGTTTCGTCCTCCTTGTAGTGTGTCGCCGTGAGCTAGCGA
GTTGTTTGGTTGATTGACTCCTGTTGGGCCCAGCCAGACATTCAAAACAA
AACGCTGTGTTTTCAACCCCTTTCCCCTTTACTCCTGCCCATTTTGTGAC
GAATTTTTTGCCCTTCAGCCCGAATCACTGGCCGCCGTTGTTAGAATTTT
CTTGAGTCTTCCCCCTTGTTTCGCCCATGTATCTCACCTTGCCTCGCGTT
TCGCAGGAGCACGAGGCTCGCCGGGCGGAGGTAGCGGCGACCCACGCGAA
AGAGCTGGAGGACGTGAAGAGGAACGAGAGAGAGGCCATCGAAACGGCCA
AGAAGGTATGAGTACATAAATATAGAATGGTAGAGACACGCTGCTGCGTA
CATGCGGTCTTAGAGTTGTTCTTCGCGTGGAACATGCATGTGTCTAGCCG
CGTATGCCCCTCTACTTGGGCTGCAGATCATCGCGAAGTGGAAAAACATG
CCGTTACCGTGAATACAATTTTCTACCGCCACATAGTAGTGAGTCGACGG
GTCATAGCGTGTTTCATTCGTTTGTTTGTTTTCCCTCCCTCTCTCTCTAC
ATGCCTCTGTGTATCTCTCTCTCTCCCTTTCACGCACACACACGCACGCA
AACCCGGAAACACGACGTCTTTTGATGCGCCCCCTCCTGCCATCCCCCCA
GCCGCACTTACTTTTTTCTCGCCGTCCTTCTTTTACGTCTTCGCCACTCC
TCCCCCCCCCCCCCAAGGCGTGCGCCGAGCTGCAGAAGCGCAACGAGGAA
ACGACCAAGCTCAAGACCGAGCTGAGCGAGGCAAAGGCTGCGGCCGCCGA
GACAGCAGCAGGGCCCCCCGTCAATCGCCGCAGAGTTACGGCTACGGGGC
TCAAGCCGGTCTCCCCCGGGCCGGTGGCGGCGGCGGCAGGAGGAGCCGGG
GCGCCGCTGAGGCGTGGAGTCCGGTACGCGATGGACGAAGGGGAGGAGAA
GGACGGCAACGGGGGCGCTGTAGATGAAACCGAGGACGGGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig96:577617..580007-

>mRNA_C-linearis_contig96.17053.1 ID=mRNA_C-linearis_contig96.17053.1|Name=mRNA_C-linearis_contig96.17053.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at C-linearis_contig96:577617..580007- (Chordaria linearis ClinC8C monoicous)
CATGAAACCGGAGCCTCCCGCTTTGTCCCACTCTGCTTCCTTGCTGCTAT
CTCTCGCGGACTCGAACGCCAGCACCTCACACGGTGCAGTGCAAGTGTAC
ATTCCGCCGGAAAAGAAGGCAAGAAAACGGCTTGCTGTGGTTCCTTCAAA
GGCCGAGAAATCGACGAGAGAGGAAAGCCTACTCTAGATTCCGCGCGTGC
TTTTGTCGGGAGGCCTGCACAACAGCAACAGCAAACCATGGCAGCCGTGA
GAGGGGGAAGCGGCGGGATCGAGGACGAGCTCGTCGGCGCAGCCGTGCAG
ATATCGGAGCTACGCCAGGAAAAGAAGAGGCTGACGCTCGCTCGTGATTC
AGCCCTGGTCGAGATCGAGGACATGAAACCGGAGCCTCCCGCTTTGTCCC
ACTCTGCTTCCTTGCTGCTATCTCTCGCGGACTCGAACGCCAGCACCTCA
CACGGTGCAGTGCAAGTGTACATTCCGCCGGAAAAGAAGGCAAGAAAACG
GCTTGCTGTGGTTCCTTCAAAGGCCGAGAAATCGACGAGAGAGGAAAGCC
TACTCTAGATTCCGCGCGTGCTTTTGTCGGGAGGCCTGCACAACAGCAAC
AGCAAACCATGGCAGCCGTGAGAGGGGGAAGCGGCGGGATCGAGGACGAG
CTCGTCGGCGCAGCCGTGCAGATATCGGAGCTACGCCAGGAAAAGAAGAG
GCTGACGCTCGCTCGTGATTCAGCCCTGGTCGAGATCGAGGAGTTCAAGA
AGATTCGCGTGGAAAACTCCCGCCAAATCCAGGTTCAAGAAGATTCGCGT
GGAAAACTCCCGCCAAATCCAGGAGCACGAGGCTCGCCGGGCGGAGGTAG
CGGCGACCCACGCGAAAGAGCTGGAGGACGTGAAGAGGAACGAGAGAGAG
GCCATCGAAACGGCCAAGAAGGAGCACGAGGCTCGCCGGGCGGAGGTAGC
GGCGACCCACGCGAAAGAGCTGGAGGACGTGAAGAGGAACGAGAGAGAGG
CCATCGAAACGGCCAAGAAGGCGTGCGCCGAGCTGCAGAAGCGCAACGAG
GAAACGACCAAGCTCAAGACCGAGCTGAGCGAGGCAAAGGCTGCGGCCGC
CGAGACAGCAGCAGGGCCCCCCGTCAATCGCCGCAGAGTTACGGCTACGG
GGCTCAAGCCGGTCTCCCCCGGGCCGGTGGCGGCGGCGGCAGGAGGAGCC
GGGGCGCCGCTGAGGCGTGGAGTCCGGTACGCGATGGACGAAGGGGAGGA
GAAGGACGGCAACGGGGGCGCTGTAGATGAAACCGAGGACGGGGCGTGCG
CCGAGCTGCAGAAGCGCAACGAGGAAACGACCAAGCTCAAGACCGAGCTG
AGCGAGGCAAAGGCTGCGGCCGCCGAGACAGCAGCAGGGCCCCCCGTCAA
TCGCCGCAGAGTTACGGCTACGGGGCTCAAGCCGGTCTCCCCCGGGCCGG
TGGCGGCGGCGGCAGGAGGAGCCGGGGCGCCGCTGAGGCGTGGAGTCCGG
TACGCGATGGACGAAGGGGAGGAGAAGGACGGCAACGGGGGCGCTGTAGA
TGAAACCGAGGACGGG
back to top