Homology
BLAST of mRNA_C-linearis_contig96.17053.1 vs. uniprot
Match: D7G4B9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B9_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 4.870e-18 Identity = 77/185 (41.62%), Postives = 103/185 (55.68%), Query Frame = 1 Query: 238 MAAVRGGSGGIEDELVGAAVQISELRQEKKRLTLARDSALVEIEEFKKIRVENSRQIQEHEARRAEVAATHAKELEDV-------KRNEREAIETAKKACAELQKRNEETTKLKTELSEAKAAAAETAAGPPV---NRRRVTATGLKPVSPGPVAAAAGGAGAPLRRGVRYAMDEGEEKDGNGGA 762
MAA+RGG GGIED+L+GA +IS+L +E K T+ RD A E N+R ++ HE R ++ HAKE+ED+ K+NEREAIETA+K AEL+ E K+KTEL NRRRVTA G++ +SP GG P G +YAM++GE+ +G G A
Sbjct: 1 MAAMRGGRGGIEDDLIGAVKEISKLSKENK--TVKRDLASAVSE--------NARLVKTHEDSRKKLELAHAKEIEDMTKAIEDAKKNEREAIETAEKTFAELKNCTIEKEKIKTELGXXXXXXXXXXXXXXXXXXNRRRVTAIGVRQISP------VGGGAGPKGGGSQYAMEDGEDDNGRGTA 169
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-02_002110.1 |
| Exons | 4 |
| Model size | 785 |
| Cds size | 783 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930818.9961827-CDS-C-linearis_contig96:577617..577890 | 1622930818.9961827-CDS-C-linearis_contig96:577617..577890 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 577618..577890 - |
| 1690881266.0328906-CDS-C-linearis_contig96:577617..577890 | 1690881266.0328906-CDS-C-linearis_contig96:577617..577890 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 577618..577890 - |
| 1622930819.0113916-CDS-C-linearis_contig96:578302..578401 | 1622930819.0113916-CDS-C-linearis_contig96:578302..578401 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 578303..578401 - |
| 1690881266.0449998-CDS-C-linearis_contig96:578302..578401 | 1690881266.0449998-CDS-C-linearis_contig96:578302..578401 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 578303..578401 - |
| 1622930819.0482054-CDS-C-linearis_contig96:578735..578775 | 1622930819.0482054-CDS-C-linearis_contig96:578735..578775 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 578736..578775 - |
| 1690881266.057948-CDS-C-linearis_contig96:578735..578775 | 1690881266.057948-CDS-C-linearis_contig96:578735..578775 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 578736..578775 - |
| 1622930819.087283-CDS-C-linearis_contig96:579636..580007 | 1622930819.087283-CDS-C-linearis_contig96:579636..580007 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 579637..580007 - |
| 1690881266.0726354-CDS-C-linearis_contig96:579636..580007 | 1690881266.0726354-CDS-C-linearis_contig96:579636..580007 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 579637..580007 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17053.1 >prot_C-linearis_contig96.17053.1 ID=prot_C-linearis_contig96.17053.1|Name=mRNA_C-linearis_contig96.17053.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=261bp
HETGASRFVPLCFLAAISRGLERQHLTRCSASVHSAGKEGKKTACCGSFK
GREIDERGKPTLDSARAFVGRPAQQQQQTMAAVRGGSGGIEDELVGAAVQ
ISELRQEKKRLTLARDSALVEIEEFKKIRVENSRQIQEHEARRAEVAATH
AKELEDVKRNEREAIETAKKACAELQKRNEETTKLKTELSEAKAAAAETA
AGPPVNRRRVTATGLKPVSPGPVAAAAGGAGAPLRRGVRYAMDEGEEKDG
NGGAVDETEDG back to topmRNA from alignment at C-linearis_contig96:577617..580007- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig96.17053.1 ID=mRNA_C-linearis_contig96.17053.1|Name=mRNA_C-linearis_contig96.17053.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2391bp|location=Sequence derived from alignment at C-linearis_contig96:577617..580007- (Chordaria linearis ClinC8C monoicous)
CATGAAACCGGAGCCTCCCGCTTTGTCCCACTCTGCTTCCTTGCTGCTAT
CTCTCGCGGACTCGAACGCCAGCACCTCACACGGTGCAGTGCAAGTGTAC
ATTCCGCCGGAAAAGAAGGCAAGAAAACGGCTTGCTGTGGTTCCTTCAAA
GGCCGAGAAATCGACGAGAGAGGAAAGCCTACTCTAGATTCCGCGCGTGC
TTTTGTCGGGAGGCCTGCACAACAGCAACAGCAAACCATGGCAGCCGTGA
GAGGGGGAAGCGGCGGGATCGAGGACGAGCTCGTCGGCGCAGCCGTGCAG
ATATCGGAGCTACGCCAGGAAAAGAAGAGGCTGACGCTCGCTCGTGATTC
AGCCCTGGTCGAGATCGAGGAGTGAGTGTGCCATTCCGGGAATACCTAAC
TGCCACGACGGCTGTTCGACCAGAGCAGCTTGCTGTGTGTCGCTTATCGC
CTGGTCGAATAAGAGGAGCCAAGCAGGGTTGTTGTAACAAGGATATCGGT
TTGTGTAGCTCGAGCTGGGGCTGGAGGTCGTATTGGTTTTGTTTTGGAAC
GGCGTATTTTGTGTGACAGCTTCCGTTCATGACGCCGAATACCACCTACC
CCCCCGAAACGGGTTTGGTATGTGGGAAGTGTGCGTGTGTGTGTGTGTGT
GTGGCGATTGATACTCGTCTTTTAGCTGCGTCGCAACGCGCTGCCAAGTT
CATTCCACAAGTGCATCGTCAGCCCTTCGTGCCAAACCCATCTCGGAGAA
GTGGCAATCCATTTGTAAGGCTGTAACATTTCGGCCAGGCGATGGGTCTG
CAGAGCTGTTGTAGCTGCCTTGCTGCTGCTTCCGCACCACACAGCAGTAA
CGGAGACATGGTTGAAAAGGGAGTGGACGACTCGTCCTCCTCTCTGCACT
TTTCTCGCAAAAAAATTGCTCCCGATGCAAGGAGAAGTGTTTTACGGAGT
GCAAATTGGGCCACTCACACGCACACACCCAGCACCTCGCTCGATGCCTA
ACTGATTGTGTGCGTCACATCCCTCTCGCAGACTTGCAAAAACGGTCTTA
AATTAGGCACTCCCTCCCGTAGAAAAATTGACCCTAGCTTCGGTTCCGTC
GACCCCCCGTTGCATGCGTATTCACGTTCCATCGAATGAAATGCTCCATA
CCTCTGTCTGACAAGCTCCTCTCATGGTGGTCTGTCGGTCATTATGTGTC
TCTCTCAACGGACCCATCGCATGTTCCGCCAGGTTCAAGAAGATTCGCGT
GGAAAACTCCCGCCAAATCCAGGTGCGGGGACTTTTGTTTTCCGTTTGTC
TTTCCCTGTACAAGTCGGAAGGCTTTGAGGAAGTGGATTGAGCGAAATAA
CTGCGCACGGTGTTTCGTCCTCCTTGTAGTGTGTCGCCGTGAGCTAGCGA
GTTGTTTGGTTGATTGACTCCTGTTGGGCCCAGCCAGACATTCAAAACAA
AACGCTGTGTTTTCAACCCCTTTCCCCTTTACTCCTGCCCATTTTGTGAC
GAATTTTTTGCCCTTCAGCCCGAATCACTGGCCGCCGTTGTTAGAATTTT
CTTGAGTCTTCCCCCTTGTTTCGCCCATGTATCTCACCTTGCCTCGCGTT
TCGCAGGAGCACGAGGCTCGCCGGGCGGAGGTAGCGGCGACCCACGCGAA
AGAGCTGGAGGACGTGAAGAGGAACGAGAGAGAGGCCATCGAAACGGCCA
AGAAGGTATGAGTACATAAATATAGAATGGTAGAGACACGCTGCTGCGTA
CATGCGGTCTTAGAGTTGTTCTTCGCGTGGAACATGCATGTGTCTAGCCG
CGTATGCCCCTCTACTTGGGCTGCAGATCATCGCGAAGTGGAAAAACATG
CCGTTACCGTGAATACAATTTTCTACCGCCACATAGTAGTGAGTCGACGG
GTCATAGCGTGTTTCATTCGTTTGTTTGTTTTCCCTCCCTCTCTCTCTAC
ATGCCTCTGTGTATCTCTCTCTCTCCCTTTCACGCACACACACGCACGCA
AACCCGGAAACACGACGTCTTTTGATGCGCCCCCTCCTGCCATCCCCCCA
GCCGCACTTACTTTTTTCTCGCCGTCCTTCTTTTACGTCTTCGCCACTCC
TCCCCCCCCCCCCCAAGGCGTGCGCCGAGCTGCAGAAGCGCAACGAGGAA
ACGACCAAGCTCAAGACCGAGCTGAGCGAGGCAAAGGCTGCGGCCGCCGA
GACAGCAGCAGGGCCCCCCGTCAATCGCCGCAGAGTTACGGCTACGGGGC
TCAAGCCGGTCTCCCCCGGGCCGGTGGCGGCGGCGGCAGGAGGAGCCGGG
GCGCCGCTGAGGCGTGGAGTCCGGTACGCGATGGACGAAGGGGAGGAGAA
GGACGGCAACGGGGGCGCTGTAGATGAAACCGAGGACGGGG back to topCoding sequence (CDS) from alignment at C-linearis_contig96:577617..580007- >mRNA_C-linearis_contig96.17053.1 ID=mRNA_C-linearis_contig96.17053.1|Name=mRNA_C-linearis_contig96.17053.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at C-linearis_contig96:577617..580007- (Chordaria linearis ClinC8C monoicous)
CATGAAACCGGAGCCTCCCGCTTTGTCCCACTCTGCTTCCTTGCTGCTAT
CTCTCGCGGACTCGAACGCCAGCACCTCACACGGTGCAGTGCAAGTGTAC
ATTCCGCCGGAAAAGAAGGCAAGAAAACGGCTTGCTGTGGTTCCTTCAAA
GGCCGAGAAATCGACGAGAGAGGAAAGCCTACTCTAGATTCCGCGCGTGC
TTTTGTCGGGAGGCCTGCACAACAGCAACAGCAAACCATGGCAGCCGTGA
GAGGGGGAAGCGGCGGGATCGAGGACGAGCTCGTCGGCGCAGCCGTGCAG
ATATCGGAGCTACGCCAGGAAAAGAAGAGGCTGACGCTCGCTCGTGATTC
AGCCCTGGTCGAGATCGAGGACATGAAACCGGAGCCTCCCGCTTTGTCCC
ACTCTGCTTCCTTGCTGCTATCTCTCGCGGACTCGAACGCCAGCACCTCA
CACGGTGCAGTGCAAGTGTACATTCCGCCGGAAAAGAAGGCAAGAAAACG
GCTTGCTGTGGTTCCTTCAAAGGCCGAGAAATCGACGAGAGAGGAAAGCC
TACTCTAGATTCCGCGCGTGCTTTTGTCGGGAGGCCTGCACAACAGCAAC
AGCAAACCATGGCAGCCGTGAGAGGGGGAAGCGGCGGGATCGAGGACGAG
CTCGTCGGCGCAGCCGTGCAGATATCGGAGCTACGCCAGGAAAAGAAGAG
GCTGACGCTCGCTCGTGATTCAGCCCTGGTCGAGATCGAGGAGTTCAAGA
AGATTCGCGTGGAAAACTCCCGCCAAATCCAGGTTCAAGAAGATTCGCGT
GGAAAACTCCCGCCAAATCCAGGAGCACGAGGCTCGCCGGGCGGAGGTAG
CGGCGACCCACGCGAAAGAGCTGGAGGACGTGAAGAGGAACGAGAGAGAG
GCCATCGAAACGGCCAAGAAGGAGCACGAGGCTCGCCGGGCGGAGGTAGC
GGCGACCCACGCGAAAGAGCTGGAGGACGTGAAGAGGAACGAGAGAGAGG
CCATCGAAACGGCCAAGAAGGCGTGCGCCGAGCTGCAGAAGCGCAACGAG
GAAACGACCAAGCTCAAGACCGAGCTGAGCGAGGCAAAGGCTGCGGCCGC
CGAGACAGCAGCAGGGCCCCCCGTCAATCGCCGCAGAGTTACGGCTACGG
GGCTCAAGCCGGTCTCCCCCGGGCCGGTGGCGGCGGCGGCAGGAGGAGCC
GGGGCGCCGCTGAGGCGTGGAGTCCGGTACGCGATGGACGAAGGGGAGGA
GAAGGACGGCAACGGGGGCGCTGTAGATGAAACCGAGGACGGGGCGTGCG
CCGAGCTGCAGAAGCGCAACGAGGAAACGACCAAGCTCAAGACCGAGCTG
AGCGAGGCAAAGGCTGCGGCCGCCGAGACAGCAGCAGGGCCCCCCGTCAA
TCGCCGCAGAGTTACGGCTACGGGGCTCAAGCCGGTCTCCCCCGGGCCGG
TGGCGGCGGCGGCAGGAGGAGCCGGGGCGCCGCTGAGGCGTGGAGTCCGG
TACGCGATGGACGAAGGGGAGGAGAAGGACGGCAACGGGGGCGCTGTAGA
TGAAACCGAGGACGGG back to top
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