prot_C-linearis_contig95.16987.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig95.16987.1
Unique Nameprot_C-linearis_contig95.16987.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length207
Homology
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BLAST of mRNA_C-linearis_contig95.16987.1 vs. uniprot
Match: D7G5K9_ECTSI (HA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K9_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.800e-12
Identity = 48/121 (39.67%), Postives = 65/121 (53.72%), Query Frame = 0 
Query:   79 WDGDIDPWAEAKSRALMQQFKDSVLDEDGLSVRVLTEESARRVADQAADGILDLAEREFRSRLHPPASSSSLFHPDDLDXXXXXXXXXXLAEVGGIVAGSSHRRAKENNDRLEEGGRIMDW 199
            W   +D     + +ALMQQFK+SVL EDGLS+R +++ESA+ +ADQAA G+LDL +REF SR+   +  SS  H                + V      +  R   E  D  EEGG  +DW
Sbjct:    2 WRQLVDASLAKQIQALMQQFKESVLGEDGLSLRAMSDESAKELADQAATGLLDLVDREFHSRISRASGGSSADHATAAHTGHPATDGRKRSVVSPFST-APERDRDEEEDSEEEGG--LDW 119
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16987.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5K9_ECTSI1.800e-1239.67HA domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..207
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.485

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:360912..364531 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16987.1mRNA_C-linearis_contig95.16987.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig95 360883..364531 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig95.16987.1 ID=prot_C-linearis_contig95.16987.1|Name=mRNA_C-linearis_contig95.16987.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=207bp
MGWRPSIGLCHASVLLSEMRVQAFVPAAGRSTGTSTKGYRHHKSELKHSS
STSREERRQAKTRLEATPQQSDMGGDVWWDGDIDPWAEAKSRALMQQFKD
SVLDEDGLSVRVLTEESARRVADQAADGILDLAEREFRSRLHPPASSSSL
FHPDDLDLDLDLDLDLDLAEVGGIVAGSSHRRAKENNDRLEEGGRIMDWG
QAEERKG
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