Homology
BLAST of mRNA_C-linearis_contig95.16987.1 vs. uniprot
Match:
D7G5K9_ECTSI (HA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K9_ECTSI)
HSP 1 Score: 75.9 bits (185), Expect = 2.240e-12
Identity = 48/121 (39.67%), Postives = 65/121 (53.72%), Query Frame = 3
Query: 264 WDGDIDPWAEAKSRALMQQFKDSVLDEDGLSVRVLTEESARRVADQAADGILDLAEREFRSRLHPPASSSSLFHPDDLDXXXXXXXXXXLAEVGGIVAGSSHRRAKENNDRLEEGGRIMDW 626
W +D + +ALMQQFK+SVL EDGLS+R +++ESA+ +ADQAA G+LDL +REF SR+ + SS H + V + R E D EEGG +DW
Sbjct: 2 WRQLVDASLAKQIQALMQQFKESVLGEDGLSLRAMSDESAKELADQAATGLLDLVDREFHSRISRASGGSSADHATAAHTGHPATDGRKRSVVSPFST-APERDRDEEEDSEEEGG--LDW 119
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16987.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 2.24e-12 / Id = 39.67 Sequence D7G5K9_ECTSI
Match Name E-value Identity Description
D7G5K9_ECTSI 2.240e-12 39.67 HA domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 76.6 Seed ortholog evalue 1.5e-11 Seed eggNOG ortholog 2880.D7G5K9 Hectar predicted targeting category other localisation EggNOG free text desc. Helicase associated domain EggNOG OGs 2B9HJ@1,2S0TY@2759 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 3 Model size 650 Cds size 621 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930815.5357745-UTR-C-linearis_contig95:360882..360911 1622930815.5357745-UTR-C-linearis_contig95:360882..360911 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 360883..360911 + 1690881264.3660471-UTR-C-linearis_contig95:360882..360911 1690881264.3660471-UTR-C-linearis_contig95:360882..360911 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 360883..360911 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930815.5637941-CDS-C-linearis_contig95:360911..361187 1622930815.5637941-CDS-C-linearis_contig95:360911..361187 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 360912..361187 + 1690881264.3760386-CDS-C-linearis_contig95:360911..361187 1690881264.3760386-CDS-C-linearis_contig95:360911..361187 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 360912..361187 + 1622930815.5806313-CDS-C-linearis_contig95:363836..363956 1622930815.5806313-CDS-C-linearis_contig95:363836..363956 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 363837..363956 + 1690881264.3846753-CDS-C-linearis_contig95:363836..363956 1690881264.3846753-CDS-C-linearis_contig95:363836..363956 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 363837..363956 + 1622930815.6446137-CDS-C-linearis_contig95:364306..364531 1622930815.6446137-CDS-C-linearis_contig95:364306..364531 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 364307..364531 + 1690881264.3936632-CDS-C-linearis_contig95:364306..364531 1690881264.3936632-CDS-C-linearis_contig95:364306..364531 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 364307..364531 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16987.1
>prot_C-linearis_contig95.16987.1 ID=prot_C-linearis_contig95.16987.1|Name=mRNA_C-linearis_contig95.16987.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=207bp
MGWRPSIGLCHASVLLSEMRVQAFVPAAGRSTGTSTKGYRHHKSELKHSS back to top mRNA from alignment at C-linearis_contig95:360883..364531+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16987.1 ID=mRNA_C-linearis_contig95.16987.1|Name=mRNA_C-linearis_contig95.16987.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3649bp|location=Sequence derived from alignment at C-linearis_contig95:360883..364531+ (Chordaria linearis ClinC8C monoicous)AGGCAGTTGGACAGGCACGCAGAAAGAGG ATGGGATGGAGGCCGTCAATT
GGGCTCTGCCATGCCTCCGTCCTCCTCTCCGAGATGAGGGTGCAGGCTTT
TGTCCCGGCGGCGGGCCGCAGCACCGGCACCAGCACCAAGGGGTACCGGC
ATCACAAGTCGGAGTTGAAGCACAGCAGCAGCACGTCCCGCGAGGAGCGA
CGACAAGCGAAGACTCGCTTGGAAGCCACGCCGCAGCAGAGCGACATGGG
TGGTGACGTCTGGTGGGATGGGGACATCGACCCCTGGGCTGAAGCCAAAA
GCAGG GTGAGGTGAAAAATCAGGGCGCAGCAACTCAGAATTCGCGCGTAC
GTAAGCAAAGCAGTTACGTATACTACGGTACGCTGTAAGCCGGAAGGAGC
AAACGGCAACGATTTCTTGGCGCCTTGTGTTTTGTTTCGCCTTTGACACG
ACCTATGCGACCAGAGAGTCGAGCCCGGAAAAGCGACATGTAGACTACGC
GCATAAATGGGCAAGTCCTGCGTGTGCCCATATGCCCAAGGCACACGCAC
GCTGTTGCAGCGGATGTTGGCGAGAGGTGGACATTCAACCCCACGAGCTC
GAGCAAATCTACCTCTGCCTCCTCTCTCTCGCCCTTGCCCCTCTACTCTC
CCTGAATTCCGAGGTCTACCCTATGCTAGCTACAGCACTGCTGTTATTTG
AATTTTGGTGCGCTTTGGCCGCAGCGCCGGTCCGCCAAGCTTCACCTCGT
CGTGCTATTCGTTCCATTGGCCTGGGGTAGCCTATACGGCGGTACACGTC
ACTAAATAATTTAATCGCTTACGTTCTTTTCCCCTCTCCTGGCTTGCTAC
GAGAAGCGAAAGAGTGTTATTTCCCCCCGTCCTTTTATCAAGAGTACTAC
TCTAGCCGGTCGCCCCGGTGGACTAGTCTAGTGGTTTCCTCAACCCACCA
GCAGCAAAGTCTGGAGTTCTATTCCAAGCAAAGGTGATTATTTTGCGACT
TTGCAGTGAAAGCGAATACATAGCTGAAAAAAGCTCGTGAGTACCAAACT
TCGACTTAGCACGTTGACGGGGGAAAGGGATGGCTGCACCCTTCTCGCGA
TAAAATCCAAGGCAAGCACCGCAGGAGGAAGGTGGGGCCTTAAAGAAACA
GAAAAAGAAGAAAAAAAGCCCCAGTGTTTACCCCCTCATGTGTGACCCCG
GTTGGTTCTAGTTGTACAGAAAAATACACTGAACAAGTGTAGTACTCTAA
ATACACCGCAACGTGTAGTACACGTCTCGCCTTGATCGGAAAGGGACTGT
CGCCAATAAATGGGAAGAAAACACACACACACACACACACACACTCCCTT
CTTCCCCTCGCTGCCTTGGCAAGGCTTTTGCTTAGGCATGGCCCATAGCG
AGGGGGGGGTCTTTCTAGCGAGCAAGGCTAGACTCACCCTCAGGTGGACC
GATACCTTCTTGCTGCTGCGCACCCGCCGCGAGGCGTGCGCAGCGGTAGA
GTTGGGTCGGCACTGGTGCGCCAGGCACAAAAGTTCAGATGCACGGGTCT
TTATGGCCGTCGGTGTAGACAGCAATGCCCTTCTCATTTTTTTCGCGGAG
GCAGACGCCACCAGAAAGGTGAAGGACACTACGTACACGACCCTAGGTTT
GCTAGAGGGAGCTGCACTGTCTCGGTAAACTGGCTTCGCTTCGCCATCAA
AGGAGAGGGGTGGGTGGCGACGAGCTGAAGACTGGGCTGGTTGACCCCTT
CGGCGCGATAATTTGTTTTTTTGAAGACCAAGCACCCTAAGTGCAACGAG
GGAGAAAGCGAGGGACCGGCTGGGAAGGACAGCGACGAGAGCTTGTACGG
ATGGAGCCGGCCGAGTGTAGTCGTGCTAGGACTGGCCACAGCGGCACCGG
AGCAGTGGCACCGGAGCATGCGGACGACATGGAACCGTGGCGCACGGACA
AACATCATGTGTTGGCAATTATTTCTTTTTTTTCTAGATGTTGGTGCTGG
GTTTTTGTGATGACGTCACTGGTTTTGTAGAGAGACGCCACAGCGATGGC
GTGAATACCCCGGGTGCCTTAATTGTGTACCTGCATCATGGAAGACCCTT
CAATGCGGAACGAGTCCTAATCAGTGTCGATGTTTACAATACTGTGCCTA
ACACAGACGTTCGGGATAGACTGGGGTTATTGTCAATTGATGTGATGGCT
TTGTTTGGTTTGCTGTTCTTTTTCACTGTATGTCCGCGGAATGTCATTCT
GGCAGCACTTCAGACAGCAGCTGTGTGCTCCATTCTTATTCCCCTGCCTA
CCGTGTGTTTTTGTACAGACAGCACTTCAGACAGCAGTTCCGCTGTAGTC
GGCTAATTCATTGGTAGGAAGTGGGAAGGGGGGGGTCGATGCTGCTATAG
TCGAATGGAGACTGCGGGCTTGCAGTTCAGATTTAGACACGCATAACTTG
CTGTAGGTATTTAAGGTGTACCTCTTCGGGCTTGTTTACCCTTTCCCTGC
TAAAAGTGTGCGTGTTCTTTAGGATTCTCTGATAGCTCTAGCACTTTTGT
GACCACGGGCTGTGATCTTGCTAGATTTTAGGGATTATCAACTGTAACGA
GTTTAATGTGAAGACAACAACAACAACAACAACAACAACAACAACATAGA
CTGCATTTCCACCCTTCCAGTGTGGCAACGACTTTTGCCCTCGCATCTAC
CAGTATGTATCTACATATGCATATACTCCTGTGATGGACCAGTACGACCA
AATCGACGTGGAAATGGGGTGTTTTGAGGTAGCATTTCACCGGGAGTTTT
AGGTTCGGAGACATCTATGTATCTACATGTAGGACTACCACCACCACCAC
CACCAACAACAACAACAACAACAACAGCAACGACGACGACGACGACGACG
ACATAAACTTGACCTTTGCTGCCCCCCCCACTCCAATACCACCCGAACAC
CCAGGCGTTGATGCAGCAGTTCAAGGACAGCGTGTTGGATGAAGATGGGT
TATCCGTGCGTGTCTTAACCGAAGAGAGCGCTAGGAGGGTGGCTGACCAA
GCTGCGGACGGCATTCTGGACCTG GTAAGTCGGCCACAACGGTAGCAACA
ATACCAGGCAGGTGGAACCACCATCTGTTACCCCCTATATTGCCCCCCGA
ACACGCACCTTTCGCCCCGAGCTTCGAAGCTCGTGTGCCTCGACAGCATC
AAAGCTACCGACGTGTGTGTCTGGGGGTTTAGCAGGCGCAGCAATGCTGC
TAACCTAACACAAAGTGCTGCTGTCCCTTGTGTTGTCTTGCACTCAATAC
CGTCGACGTGACGTAGCCAAACTCACCGCACCCCCGACACAATCACTGGG
CCCCCCGTCACACACACACACACACACACATACATCTCCCAACTCTCACT
CCAACCCTATTCCTCCAATTGCAGGCGGAGCGAGAGTTTAGAAGTAGACT
CCACCCCCCGGCGAGTAGCAGCAGCTTGTTCCATCCAGACGATCTCGATC
TCGATCTCGATCTCGATCTCGATCTCGATCTCGCCGAGGTCGGTGGAATC
GTTGCCGGATCGAGCCACCGCCGTGCAAAAGAAAACAACGACAGGCTAGA
AGAGGGCGGGAGGATCATGGATTGGGGCCAGGCGGAGGAGAGAAAGGGG back to top Coding sequence (CDS) from alignment at C-linearis_contig95:360883..364531+
>mRNA_C-linearis_contig95.16987.1 ID=mRNA_C-linearis_contig95.16987.1|Name=mRNA_C-linearis_contig95.16987.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at C-linearis_contig95:360883..364531+ (Chordaria linearis ClinC8C monoicous) back to top