mRNA_C-linearis_contig95.16995.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16995.1
Unique NamemRNA_C-linearis_contig95.16995.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig95.16995.1 vs. uniprot
Match: A0A6H5JGC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC6_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 3.410e-63
Identity = 107/149 (71.81%), Postives = 122/149 (81.88%), Query Frame = 1 
Query:   37 LVPGDMQPRPQYDDEDGPPVGVSFLLVVLGAVALCIAAVYLRASTLHEREIRISAFEATISAWNTSRPMFARLSVNVTAHFGVAPPNTTSPGLDPNPPVPAPPLPLTVSENPDPIYDEEGASGGLPNYEPLKLDRGIAPLPWRTAPRFP 483
            L  G+  PR +Y++E GPP  VSFLL++LG  ALCIAAVYLRASTLH+REI+ISA+E TIS W   RP FARLS+NVTAHFGVAP NTTSPGLDPNPP P  PL L VSE+ DPI+DEEG +GGLPNY PLKL+RG+AP PWRTA RFP
Sbjct:   25 LPAGEAMPRARYENE-GPPAAVSFLLIILGIAALCIAAVYLRASTLHDREIKISAYEETISEWTAFRPTFARLSINVTAHFGVAPVNTTSPGLDPNPPPPGTPLALAVSEDADPIHDEEGDAGGLPNYVPLKLERGVAPPPWRTARRFP 172
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGC6_9PHAE3.410e-6371.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:433282..436937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons5
Model size752
Cds size699
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16995.1prot_C-linearis_contig95.16995.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 433333..436937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930808.600481-UTR-C-linearis_contig95:433281..4333321622930808.600481-UTR-C-linearis_contig95:433281..433332Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 433282..433332 +
1690881260.8161712-UTR-C-linearis_contig95:433281..4333321690881260.8161712-UTR-C-linearis_contig95:433281..433332Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 433282..433332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930808.631931-CDS-C-linearis_contig95:433332..4333351622930808.631931-CDS-C-linearis_contig95:433332..433335Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 433333..433335 +
1690881260.8269935-CDS-C-linearis_contig95:433332..4333351690881260.8269935-CDS-C-linearis_contig95:433332..433335Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 433333..433335 +
1622930808.6447012-CDS-C-linearis_contig95:434514..4345571622930808.6447012-CDS-C-linearis_contig95:434514..434557Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 434515..434557 +
1690881260.8372087-CDS-C-linearis_contig95:434514..4345571690881260.8372087-CDS-C-linearis_contig95:434514..434557Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 434515..434557 +
1622930808.6565547-CDS-C-linearis_contig95:435356..4354571622930808.6565547-CDS-C-linearis_contig95:435356..435457Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 435357..435457 +
1690881260.8491166-CDS-C-linearis_contig95:435356..4354571690881260.8491166-CDS-C-linearis_contig95:435356..435457Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 435357..435457 +
1622930808.6744003-CDS-C-linearis_contig95:436072..4363101622930808.6744003-CDS-C-linearis_contig95:436072..436310Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 436073..436310 +
1690881260.8664792-CDS-C-linearis_contig95:436072..4363101690881260.8664792-CDS-C-linearis_contig95:436072..436310Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 436073..436310 +
1622930808.6899712-CDS-C-linearis_contig95:436623..4369371622930808.6899712-CDS-C-linearis_contig95:436623..436937Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 436624..436937 +
1690881260.8771024-CDS-C-linearis_contig95:436623..4369371690881260.8771024-CDS-C-linearis_contig95:436623..436937Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 436624..436937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16995.1

>prot_C-linearis_contig95.16995.1 ID=prot_C-linearis_contig95.16995.1|Name=mRNA_C-linearis_contig95.16995.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp
MQPRPQYDDEDGPPVGVSFLLVVLGAVALCIAAVYLRASTLHEREIRISA
FEATISAWNTSRPMFARLSVNVTAHFGVAPPNTTSPGLDPNPPVPAPPLP
LTVSENPDPIYDEEGASGGLPNYEPLKLDRGIAPLPWRTAPRFPPPEEED
SEEEDDEEEAGDAVGSSAEERQEEGEGEGQETPDSVGTGAGADGGGRRRR
QRRRRILEDGRWTGAALPAHNAGAGAAVAAAAA
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mRNA from alignment at C-linearis_contig95:433282..436937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16995.1 ID=mRNA_C-linearis_contig95.16995.1|Name=mRNA_C-linearis_contig95.16995.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3656bp|location=Sequence derived from alignment at C-linearis_contig95:433282..436937+ (Chordaria linearis ClinC8C monoicous)
GGGCTGTCTCCCACCGCCAGCAGCGGCAGCTAGAGCCTAGTACCTGGCGA
CATGGTGAGCGGATGGTGTTGCTTCGATTAGAGCGTAGGGTTCTTCTCCC
TGCTCTCGCATTGTCTGCAGCCCTACCCGACGCGCTCCTGCTCGAGCCTT
TTGCCATCACACAACAGGCTCAACCCGCCGATGTGGTTCTTCTGTCTGCC
TCTCTCTCTGCAGATTGCTGTGTGTCTCAGAGCCAGAGGCACCAGCAGTC
AGCCACATATGATGGGCAGGCAGACATATTTCCCTTTGCCCGCATTTCTC
GGCTCCAGCAGTCTTCAAAGGGTTTGAGTGCAACCGGCAGCAGTAGGTAC
CCTTTACCTCCTGAGACGTGTGGAGGCATTACCGGAACTCCGATGTTTGT
CTTGAGCCTAAAGCAGCAGCGTACTAGGTAGGTAGGGCGTGGAGGTAGCG
CCAGGGGCAGGTGGCAAAGCTGCTAGTGCTGAGCCCTAAAAATCCCCCTG
CGGACAAACTGTTCGATTTTGGTTTGTTTCGCTCAGGGATAGCACCCACA
CACACAGCGGCACCAGATGACGGGTGTACATGTGTTCTTGATGGCTGCGG
TTGTTTGATTGTTCTACCCTCATACTTTCGATACTGCTGTATGTAATGAA
TGTAGCAAAGTGCTTACACCGAAAGTAGCCTGCAGCGCGAGAGGTAGCGC
CCAGGCTAGTGAATGAAAGATATCAATATCTGCGCCTCAGCCGCTTTCAA
CATGACCGAATTTGACCAATATTTTTATTTAGACACAGAGTTTGCGCTCC
GCCAATATTAATATCTAGACACGCACGTTTGCGCTCTGCCGCCGGCGCGC
CACCCCTGAACCTGGCCTGCTGTCCCACATCAGTGGGTTTCAGTCTACAG
ACTTTACAGCAGGGGGCGGGTTTTCCATATTCGCTCGCTCTGCCCAAAAT
GCTTGTTTTGCTTGACGAGGCCGCTGCTGCTGTGCGCTCTCTCTCCTAGA
ATGATGATGGCGGCGTTTTCGGGTCACATACATACATTTCGAAGTACATA
CATACAGGAGTAGCACCATTCTCTCATTGGAGCCCTTCCCCGACAGAATG
GATTGGTTGTGGCTCGTGCGAGTCTTCCGCGGGTTCCCGCAGACGTTTGT
TAACCATTATACCCCCACCTCGCCTCCTTGTGTATTTCTCACTGGCTTGG
CATCGTGCGCGCGTCGCCGCTTGGGACGCGAAGCAGCCCAGACCCCAATA
CGATGACGAAGACGGGCCCCCCGTGGGTGAGACAATATTTGTATCTACGT
ATCATAGATGCATGCGAATAGAAGTTCCTACACCCCAGAGCAGGTAGACT
ATGTGCCTTGATTTCCTTGTGTGAAGAGAGCTGGGCGGAGAAGCTGTGGC
CTTGAAGAGAAAGAAGCATGTCGACAAGAGAATGCGTGCGGCATTCGGGA
TCGATGATTTGGGCAGGAAATAGACCCAGGGGTCGCTTCACCAGACTCCT
CCCACCTCCGGCGGTATCTTGAAATTTAAGTATAGCCGTATCGTTCGAAC
GCCAAGTTTCGACTGTGGTATGATACGATACAATGCAGACCCAGAAAGTT
GGCCCAACACCCAATCAAACTATATTGAGGGGCACCGTGTATTGTGTGTG
TGCGTGTGTGTTGTTTTAAAGTTTAGGCAATGTTGCAACAGCAGGGGCAG
CAACAGCTGGCATCTCGTTGGCGTTGATGGTTGGCTCCGATGTTGTTGCG
CCAGCCAGGCCTAAAGGGCGTTGCTTTGCCGCGGCTGCGTGGCTGTTGTG
GGCGTCTGTCCACCTGCCACCCCGAACGCGGCGTAAATTCGGGTGCATGT
CCACTCTCAGCCTCTCAGCGTCCACCGAACCTCGTATATTTTCCCAAAGC
TTTTCTGCTGATCGCGGAGGCCGGCCTACGGGCGATGTTCGCTGGGCTTT
CTGTTTCCTCTCTGTGTGCTGTAGCTGCTGTCTGTGCATGCACCCTGTGT
AACCAATACCTCTCCATGCACGGCCCGTCCCCAAACATCATCCGAAAATC
TGAAAATCTGGACAATCGAACACAGGCGTATCGTTTCTTCTTGTCGTCCT
CGGCGCGGTGGCTCTGTGCATCGCCGCGGTTTACCTCAGGGCGTCCACTC
TGCACGAGCGAGAGATCAGAATCTCGGTGAGCCCTGCCCCGCGCGTTCGG
GTGTGCTTGCTTTGGTTTGCTTTGCTTTGAGAAGCCGTTTATCTGCGCCT
GAGGTGTGTCAAGTCATTTGCCGGGTTTTTCGATTACAAGAGGGTTGATG
CAGGACCGGAATCAACCAGTGTTTCATTCCTCTTCTTGACCCGCCTGCTC
GCTGCTCAACAATTACTTTAGGGGCCGGCTAGCCGTATCACCAATCCTAA
ACCTGGCTCCACATCACTCACAGCAGACCGAGTTGGCATGCACATGAAGT
CATGATGTGTCCCGCTTCACTACCGCTTACTCAATTTTTCGCGTCCACAC
CTACAATGCCGATTTGTAGCCCTACTGTATGTAGCTTCGGATCACTCAAA
CGTATCTGACCGCTGGCGGTGTACGTAACACACACCATTGTGGAACGTCA
TCTTTCCCCGCTACGGACCCGCGTGAAATCTCCGCCACCATGCCCGCGAA
CCGTAGTTTTCACCTTTGGATAACTCGTACACAGCTCTGGCCACAACGTG
TCGCCTAAGTCTGCCACGTTATTTCACGTTCCCCCCTCCGCCCGCCGCCG
CCGCCTGCTCGAAAAACTCGAAAAATCCTTCTCTCCACCAGGCCTTCGAA
GCGACCATCTCCGCTTGGAACACCTCCCGCCCGATGTTCGCCCGCCTCTC
CGTCAACGTGACGGCGCACTTCGGGGTGGCCCCGCCGAACACCACGTCCC
CGGGGCTGGACCCCAACCCTCCCGTCCCCGCCCCCCCCCTCCCGCTCACG
GTCTCCGAGAACCCGGACCCGATCTATGACGAGGAGGGCGCCTCGGGCGG
GCTGCCAAACTACGAGCCCCTGAAGCTTGGTGAGGGCAGGATAGGGCCGG
GCCGGACTGGGCGGGGCCGGGGGAGTTGGTGGTTCAGTTTTGGCGTGTTT
TGAGGGGCGGTAGGGGCGGTCGGAGAGGCTGCCTCCGATGGCAGGCGTTG
TTTGTGCTGTACCTTTCTGTCGTCTGCTGCCGGAAGGTAGCTGCTGCTGC
TGCTGCCGCCGCGGCGGCGGCGAGGGCGGCGGCGAGGGCGGCGGCGGCCG
CGTGTGGTTGAACGTATTCCCCCCCCGTCCTCTTATAATCCCAGCAAGGC
AAGCCGAACCCTAACCCAACCCTCCGCGCGTTGACCCCGCAGACAGAGGA
ATCGCGCCGCTCCCGTGGAGAACCGCCCCGCGGTTTCCCCCTCCAGAAGA
AGAAGATTCCGAGGAAGAGGACGACGAGGAGGAGGCAGGCGATGCTGTCG
GGTCTTCGGCAGAGGAAAGGCAGGAGGAGGGAGAGGGAGAGGGACAAGAA
ACCCCCGACAGCGTCGGGACCGGTGCGGGCGCGGACGGCGGCGGAAGGCG
GAGGCGGCAACGGAGGCGACGAATACTGGAAGACGGCCGATGGACCGGCG
CCGCGTTGCCAGCACACAACGCCGGTGCTGGGGCGGCGGTAGCGGCAGCG
GCAGCG
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Coding sequence (CDS) from alignment at C-linearis_contig95:433282..436937+

>mRNA_C-linearis_contig95.16995.1 ID=mRNA_C-linearis_contig95.16995.1|Name=mRNA_C-linearis_contig95.16995.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at C-linearis_contig95:433282..436937+ (Chordaria linearis ClinC8C monoicous)
ATGATGCAGCCCAGACCCCAATACGATGACGAAGACGGGCCCCCCGTGGC
AGCCCAGACCCCAATACGATGACGAAGACGGGCCCCCCGTGGGCGTATCG
TTTCTTCTTGTCGTCCTCGGCGCGGTGGCTCTGTGCATCGCCGCGGTTTA
CCTCAGGGCGTCCACTCTGCACGAGCGAGAGATCAGAATCTCGGCGTATC
GTTTCTTCTTGTCGTCCTCGGCGCGGTGGCTCTGTGCATCGCCGCGGTTT
ACCTCAGGGCGTCCACTCTGCACGAGCGAGAGATCAGAATCTCGGCCTTC
GAAGCGACCATCTCCGCTTGGAACACCTCCCGCCCGATGTTCGCCCGCCT
CTCCGTCAACGTGACGGCGCACTTCGGGGTGGCCCCGCCGAACACCACGT
CCCCGGGGCTGGACCCCAACCCTCCCGTCCCCGCCCCCCCCCTCCCGCTC
ACGGTCTCCGAGAACCCGGACCCGATCTATGACGAGGAGGGCGCCTCGGG
CGGGCTGCCAAACTACGAGCCCCTGAAGCTTGGCCTTCGAAGCGACCATC
TCCGCTTGGAACACCTCCCGCCCGATGTTCGCCCGCCTCTCCGTCAACGT
GACGGCGCACTTCGGGGTGGCCCCGCCGAACACCACGTCCCCGGGGCTGG
ACCCCAACCCTCCCGTCCCCGCCCCCCCCCTCCCGCTCACGGTCTCCGAG
AACCCGGACCCGATCTATGACGAGGAGGGCGCCTCGGGCGGGCTGCCAAA
CTACGAGCCCCTGAAGCTTGACAGAGGAATCGCGCCGCTCCCGTGGAGAA
CCGCCCCGCGGTTTCCCCCTCCAGAAGAAGAAGATTCCGAGGAAGAGGAC
GACGAGGAGGAGGCAGGCGATGCTGTCGGGTCTTCGGCAGAGGAAAGGCA
GGAGGAGGGAGAGGGAGAGGGACAAGAAACCCCCGACAGCGTCGGGACCG
GTGCGGGCGCGGACGGCGGCGGAAGGCGGAGGCGGCAACGGAGGCGACGA
ATACTGGAAGACGGCCGATGGACCGGCGCCGCGTTGCCAGCACACAACGC
CGGTGCTGGGGCGGCGGTAGCGGCAGCGGCAGCGACAGAGGAATCGCGCC
GCTCCCGTGGAGAACCGCCCCGCGGTTTCCCCCTCCAGAAGAAGAAGATT
CCGAGGAAGAGGACGACGAGGAGGAGGCAGGCGATGCTGTCGGGTCTTCG
GCAGAGGAAAGGCAGGAGGAGGGAGAGGGAGAGGGACAAGAAACCCCCGA
CAGCGTCGGGACCGGTGCGGGCGCGGACGGCGGCGGAAGGCGGAGGCGGC
AACGGAGGCGACGAATACTGGAAGACGGCCGATGGACCGGCGCCGCGTTG
CCAGCACACAACGCCGGTGCTGGGGCGGCGGTAGCGGCAGCGGCAGCG
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