prot_C-linearis_contig95.16995.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig95.16995.1
Unique Name	prot_C-linearis_contig95.16995.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	233

Homology

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BLAST of mRNA_C-linearis_contig95.16995.1 vs. uniprot
Match: A0A6H5JGC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC6_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 2.880e-62
Identity = 105/142 (73.94%), Postives = 119/142 (83.80%), Query Frame = 0

Query:    3 PRPQYDDEDGPPVGVSFLLVVLGAVALCIAAVYLRASTLHEREIRISAFEATISAWNTSRPMFARLSVNVTAHFGVAPPNTTSPGLDPNPPVPAPPLPLTVSENPDPIYDEEGASGGLPNYEPLKLDRGIAPLPWRTAPRFP 144
            PR +Y++E GPP  VSFLL++LG  ALCIAAVYLRASTLH+REI+ISA+E TIS W   RP FARLS+NVTAHFGVAP NTTSPGLDPNPP P  PL L VSE+ DPI+DEEG +GGLPNY PLKL+RG+AP PWRTA RFP
Sbjct:   32 PRARYENE-GPPAAVSFLLIILGIAALCIAAVYLRASTLHDREIKISAYEETISEWTAFRPTFARLSINVTAHFGVAPVNTTSPGLDPNPPPPGTPLALAVSEDADPIHDEEGDAGGLPNYVPLKLERGVAPPPWRTARRFP 172

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig95.16995.1 vs. uniprot

BLAST of mRNA_C-linearis_contig95.16995.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

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POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JGC6_9PHAE	2.880e-62	73.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..14
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 15..36
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 37..233
None	No IPR available	TMHMM	TMhelix		coord: 15..37

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig95	contig	C-linearis_contig95:433333..436937 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig95.16995.1	mRNA_C-linearis_contig95.16995.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig95 433282..436937 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig95.16995.1 ID=prot_C-linearis_contig95.16995.1|Name=mRNA_C-linearis_contig95.16995.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp
MQPRPQYDDEDGPPVGVSFLLVVLGAVALCIAAVYLRASTLHEREIRISA
FEATISAWNTSRPMFARLSVNVTAHFGVAPPNTTSPGLDPNPPVPAPPLP
LTVSENPDPIYDEEGASGGLPNYEPLKLDRGIAPLPWRTAPRFPPPEEED
SEEEDDEEEAGDAVGSSAEERQEEGEGEGQETPDSVGTGAGADGGGRRRR
QRRRRILEDGRWTGAALPAHNAGAGAAVAAAAA