mRNA_C-linearis_contig95.16978.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16978.1
Unique NamemRNA_C-linearis_contig95.16978.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.960e-9
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 2 
Query:   47 SFWQDLAGGTVGGVIGMTVVYPLDTVKCRLQTTG 148
            S WQ+LAGGT GGVIGMTVVYPLDT+K RLQT+G
Sbjct:    3 SLWQELAGGTAGGVIGMTVVYPLDTIKSRLQTSG 36
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BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Match: A0A6H5K323_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K323_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.200e-8
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2 
Query:   47 SFWQDLAGGTVGGVIGMTVVYPLDTVKCRLQTTGDVLVSRPHVSAGGIRDDV 202
            + WQDL GGTVGGVIG+T V PLDTVK RLQT G  L +   +S+  + + V
Sbjct:    3 TLWQDLTGGTVGGVIGVTAVCPLDTVKSRLQTGGRYLGTVQVLSSMAVHEGV 54
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BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Match: D7FLY9_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY9_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 9.040e-7
Identity = 24/37 (64.86%), Postives = 32/37 (86.49%), Query Frame = 3 
Query:  141 QRVMSWYRGLMSPLVGFGTMFAVAFASFGSASRFLLR 251
            + +MSWYRGL+SP+ G+G MFAV+F+S+G ASRFL R
Sbjct:    5 EGLMSWYRGLLSPVAGYGAMFAVSFSSYGMASRFLQR 41
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JUA4_9PHAE3.960e-982.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K323_9PHAE4.200e-855.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLY9_ECTSI9.040e-764.86Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:274625..277075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size397
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16978.1prot_C-linearis_contig95.16978.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 274635..277012 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930807.9225883-UTR-C-linearis_contig95:274624..2746341622930807.9225883-UTR-C-linearis_contig95:274624..274634Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 274625..274634 +
1690881260.4716423-UTR-C-linearis_contig95:274624..2746341690881260.4716423-UTR-C-linearis_contig95:274624..274634Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 274625..274634 +
1622930808.010147-UTR-C-linearis_contig95:277012..2770751622930808.010147-UTR-C-linearis_contig95:277012..277075Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 277013..277075 +
1690881260.531118-UTR-C-linearis_contig95:277012..2770751690881260.531118-UTR-C-linearis_contig95:277012..277075Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 277013..277075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930807.9545374-CDS-C-linearis_contig95:274634..2747561622930807.9545374-CDS-C-linearis_contig95:274634..274756Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 274635..274756 +
1690881260.4889305-CDS-C-linearis_contig95:274634..2747561690881260.4889305-CDS-C-linearis_contig95:274634..274756Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 274635..274756 +
1622930807.9706311-CDS-C-linearis_contig95:275283..2752971622930807.9706311-CDS-C-linearis_contig95:275283..275297Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 275284..275297 +
1690881260.504141-CDS-C-linearis_contig95:275283..2752971690881260.504141-CDS-C-linearis_contig95:275283..275297Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 275284..275297 +
1622930807.9944122-CDS-C-linearis_contig95:276824..2770121622930807.9944122-CDS-C-linearis_contig95:276824..277012Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 276825..277012 +
1690881260.5206857-CDS-C-linearis_contig95:276824..2770121690881260.5206857-CDS-C-linearis_contig95:276824..277012Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 276825..277012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16978.1

>prot_C-linearis_contig95.16978.1 ID=prot_C-linearis_contig95.16978.1|Name=mRNA_C-linearis_contig95.16978.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=108bp
MEDGREEEAMGASFWQDLAGGTVGGVIGMTVVYPLDTVKCRLQTTGDVLV
SRPHVSAGGIRDDVCRCLRLLRLRQPFPAKVRSLWPKCFFRFPQGRPGGL
VDKPHTF*
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mRNA from alignment at C-linearis_contig95:274625..277075+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16978.1 ID=mRNA_C-linearis_contig95.16978.1|Name=mRNA_C-linearis_contig95.16978.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2451bp|location=Sequence derived from alignment at C-linearis_contig95:274625..277075+ (Chordaria linearis ClinC8C monoicous)
CAAGCGAGAGATGGAGGACGGGAGGGAGGAAGAGGCCATGGGGGCCTCCT
TCTGGCAGGACCTCGCCGGCGGTACCGTGGGCGGCGTCATTGGGATGACT
GTCGTGTACCCTCTCGACACGGTGAAGTGCAGGCAAGTGCGGCTGGGTGA
CGTGGCAAGTGTTCCCGGTGCCACAAGTGCAACACTTCGTTCCTGCCTCT
CGTTGTTGCCTGGCTCCTTCTCTCCCTCCCCTCTCCTGGGTTGAGACCAG
CTCGGCCGTCTACCCTAGCCGAACAGCAGCAGTTGGTCTTCTCCAAACTC
TTATGAAAAACGGGCATGCCATTGCGCCCCTACAAGCGTACAAGCGAGCG
CAGCCAGTTTGGCATCAGTTTATTTTCATTTCTTTGTTGCAGATGACAAC
TTTCGGAACATACCTGCTGCCTGGGATTGCTTGCTCCGGCGCGATACCAA
CGGCCCCTGTTTGTGGACATATGGGCTATGGGCTATCCGGTTAGCAGGAC
CTTCCTCCTCAAGTTTTTTTTTGACGCACATCTGCATCATTTTTCGATGG
CGTGCATGTGATGCAGATGATGCAGGTACAGACGGTATCAGTACAAATAA
TCCCCAGGGCCCGCCCTCGCCCCCCTCGCTCTGCTCGCTCCCTCGCCGCT
GGCTTACAGGTTGCAGACAACGGGTAAGTACGGAGGCATGGCCCATGTGC
TTACCTCCATGGCGAGAAAGGAAGGAGTGAGACAAAACGAGAGAGAGAAA
ACTGCTGTGTCGTTGCTTGCCCTGCGGCGATGTTCGGCCGTCAAGCTGTA
CTCTGACTTTTCTCCAAAAGGGTCCCGTGCCGTACAACAGCTGTGCGCAT
ATTTCAGGAACATTCGATAGAGTTTAGCGGATTCTGAGAACAGGCCGGGA
GGGAGAAAAACATGCGGATTCAGAGAGCATGGCTGCACACACTTATTATA
ACACACACACACACATGCACGCGCGCGCACACACACACACATTCGGATCA
AGACGAGCCACACGGCGCGCGTCGCCGAGGACGCGAAAACCGAACCGGGC
TAACCGCACAAATGTTGTATGTAGCTCAAGTTGTACATGGTTGTGGGAGC
GAAGGTTCGTGCCCCCGCTTCCGCGGAAGCGGCTTGAACGGCAGTGAGAA
GTGAACGCGGGAGTGGCTGCTGCTGTCAGAACACACGGGAAGCGGAGCTG
CCCCGGGGATACTCCTAAACTCTAAATTCCCCAACGTTCATTCAGAAGTT
CAAAATCTTCAAAGCTGTTAAATACGGCTCTGAAAGGCGACACACTGCAG
CGAATAGTTTCTAGCAGAAAGACGAACCGAAACAGGAGCAAAATATTATC
TCGGGTTTGCTTTCGCCAGGAAACAGCTACACCAGTATTTCTTCAGTAGT
AGCAGTCCTGCAGGGCGACACCACCGCACCGGGAATGGTTCACCGTGGTC
TTCCCCTTCTACAGCAGTAGACTTCGACAGAATCCTGCCGATACACACGT
ACATACGTATGCTTGGTTCCAATACACGAGAAGCCTGGACTGACTGGCGT
ATAGCTCGACCGACCTTACAATCCCACCATCCCACTACAAGTATCCCACT
CCGGCGGAGGTTCAGGAAAAAGTGAGCTTTCTGCTTTTCTGTTTCCGCGT
GTCGGGCCGCCTGCACACTTTCGTGGCCATTAGACCAACATCAAACCTAT
GCTATTAGAACATTAGAACAGTGCCCTTCTCTCGATTTCTCGGGAAGTGG
AAGCACCGCCCAGGACAGGACAAGTCAAATCAGTGTGTATTGTTTTGTTT
TGGTCGTTTCTTTCCTTGGTCTGTTCAGTGCGTTTCTAGTTTATTTAGTC
TGGTCTGTTCAGTGCTCTCGCGCGTTTCTTCAAAACTGAATCCTTGCGGC
AACCGGAGCTAACCCCAACAAACTCGTGTTGCTTATTTAGATTCCAAAAA
TGTGACACGGTGCGTCCATACGTTGAAGTACAAGGTGACGCCGTGATGAT
TGTTCGAAAGGACGGCGGTGACTCATGAGGCGCCTTCTTCTTCTGGCGCT
GGCTACAAAAGTGGTTTTTAGACGCCCTGCGACGAGTCACGCGGCTGCAC
GGCACCTGTCTCTCGATTCAATCTCCTCCTCACTTATAACAATCTCTTCT
TTTTTGTGCTGTTCCGCCACCAAATGTCGAATATTGTGCTGCGCTCGCAG
GTGATGTCCTGGTATCGAGGCCTCATGTCTCCGCTGGTGGGATTCGGGAC
GATGTTTGCCGTTGCCTTCGCCTCCTTCGGCTCCGCCAGCCGTTTCCTGC
TAAGGTTCGCTCGTTATGGCCCAAGTGTTTTTTCCGATTCCCACAAGGTC
GCCCCGGTGGTCTAGTTGATAAACCGCACACCTTCTAGCGCCCAGGTCAC
GGGTTCAAATCCCGGCGTATGCGATCTTTTCTCACAATAAAAACCGTGAG
T
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Coding sequence (CDS) from alignment at C-linearis_contig95:274625..277075+

>mRNA_C-linearis_contig95.16978.1 ID=mRNA_C-linearis_contig95.16978.1|Name=mRNA_C-linearis_contig95.16978.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at C-linearis_contig95:274625..277075+ (Chordaria linearis ClinC8C monoicous)
ATGGAGGACGGGAGGGAGGAAGAGGCCATGGGGGCCTCCTTCTGGCAGGA
CCTCGCCGGCGGTACCGTGGGCGGCGTCATTGGGATGACTGTCGTGTACC
CTCTCGACACGGTGAAGTGCAGATGGAGGACGGGAGGGAGGAAGAGGCCA
TGGGGGCCTCCTTCTGGCAGGACCTCGCCGGCGGTACCGTGGGCGGCGTC
ATTGGGATGACTGTCGTGTACCCTCTCGACACGGTGAAGTGCAGGTTGCA
GACAACGGGTTGCAGACAACGGGTGATGTCCTGGTATCGAGGCCTCATGT
CTCCGCTGGTGGGATTCGGGACGATGTTTGCCGTTGCCTTCGCCTCCTTC
GGCTCCGCCAGCCGTTTCCTGCTAAGGTTCGCTCGTTATGGCCCAAGTGT
TTTTTCCGATTCCCACAAGGTCGCCCCGGTGGTCTAGTTGATAAACCGCA
CACCTTCTAGGTGATGTCCTGGTATCGAGGCCTCATGTCTCCGCTGGTGG
GATTCGGGACGATGTTTGCCGTTGCCTTCGCCTCCTTCGGCTCCGCCAGC
CGTTTCCTGCTAAGGTTCGCTCGTTATGGCCCAAGTGTTTTTTCCGATTC
CCACAAGGTCGCCCCGGTGGTCTAGTTGATAAACCGCACACCTTCTAG
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